BAC Information

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BAC

Clone NameB6Ng01-216E06
Chromosome4 (Build37)
Map Location 135,892,755 - 136,090,238
singlet/doubletdoublet
Overlap geneHnrpr, Htr1d, LOC100042540, Luzp1
Upstream geneSrrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46
Downstream geneAof2, LOC667080, LOC433770, 4930549C01Rik, BC029684, Ephb2, C1qb, C1qc, C1qa, Epha8, Zbtb40, Wnt4, Cdc42, LOC665533, LOC242711, Ela3, 1700013G24Rik, Hspg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216E06.bB6Ng01-216E06.g
ACCGA033001GA033002
length1271,035
definitionB6Ng01-216E06.b B6Ng01-216E06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,090,112 - 136,090,238)(135,892,755 - 135,893,784)
sequence
tgctctcctccaggagagtcctgctgtgcacacagcattggttaattaac
aaaggctatgcctaaagtaggggcttggaatgaaatcttgaatgaatccc
cttggggcggtggggggtggggtggga
gaattcactatgtagaccaggtcagccttgaactcacagtggtgcacctg
cctctgtactccaagtgctggaattaaaggcatccaccacaacccccagc
tcttaatgggcagagcttttcatttcttcttttctccttccttaactgaa
aaatcaagactacttttgtagtcttttttttttttttttaaatatatgat
cgggaaaatggaatactaagagagtcaaacactgttcttttctcacattc
tctattgatggttgtcttagttagggtttctattgctttgataaaatttc
atgactaaaagcaacttgggaaggaaagggtttatttgattttaaagctt
gtagttcaccatccaaggaagtctgggcaggaactcaagcagaagaatgc
tgcttattttggcttgctccgcttggcttacttagcctgcaaatttagag
cacccaggaccaccagcccaggagtaacacctctcacagggagttggccc
cgcccacaggttaatctgatgaaagcattttctcagttgaagctcctagg
agactagcgagtgctgacatagaccagtgcagtggtacactactactgac
gtttgatttgagcatttacttccctgactaggttgatgctttaaagtaga
acttaaaagaactactggctggtatagggttttgtttgtttgctttcttg
ttttttgtagtactgataatcaaaacctagaactgcaaagcaagcacatt
agacattagctctgtttctcgagttctagtgtagagttaattactttgct
ttcttctcgtatgttgtggaaaatatttttaaaaaaaacaaatggcagtt
cccgggctagcaggctgcatgggcttcaacaggtgttctcatctcaacag
attcttctggacccgaggctcgcagatttctcccaccccgactcactaat
tccccttgtggaactgcctgcccatgccagccccatgcatgactgtccca
ccctctggttagaattacaaataaccagtaacctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_136090112_136090238
seq2: B6Ng01-216E06.b_46_172 (reverse)

seq1  TCCCACCCCACCCCCCACCGCCCCAAGGGGATTCATTCAAGATTTCATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCCCACCCCCCACCGCCCCAAGGGGATTCATTCAAGATTTCATTC  50

seq1  CAAGCCCCTACTTTAGGCATAGCCTTTGTTAATTAACCAATGCTGTGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCCCTACTTTAGGCATAGCCTTTGTTAATTAACCAATGCTGTGTGC  100

seq1  ACAGCAGGACTCTCCTGGAGGAGAGCA  127
      |||||||||||||||||||||||||||
seq2  ACAGCAGGACTCTCCTGGAGGAGAGCA  127

seq1: chr4_135892755_135893784
seq2: B6Ng01-216E06.g_71_1105

seq1  GAATTCACTATGTAGACCAGGTCAGCCTTGAACTCACAGTGGTGCACCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTAGACCAGGTCAGCCTTGAACTCACAGTGGTGCACCTG  50

seq1  CCTCTGTACTCCAAGTGCTGGAATTAAAGGCATCCACCACAACCCCCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTACTCCAAGTGCTGGAATTAAAGGCATCCACCACAACCCCCAGC  100

seq1  TCTTAATGGGCAGAGCTTTTCATTTCTTCTTTTCTCCTTCCTTAACTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATGGGCAGAGCTTTTCATTTCTTCTTTTCTCCTTCCTTAACTGAA  150

seq1  AAATCAAGACTACTTTTGTAGTCTTTTTTTTTTTTTTTTAAATATATGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAGACTACTTTTGTAGTCTTTTTTTTTTTTTTTTAAATATATGAT  200

seq1  CGGGAAAATGGAATACTAAGAGAGTCAAACACTGTTCTTTTCTCACATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAAAATGGAATACTAAGAGAGTCAAACACTGTTCTTTTCTCACATTC  250

seq1  TCTATTGATGGTTGTCTTAGTTAGGGTTTCTATTGCTTTGATAAAATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGATGGTTGTCTTAGTTAGGGTTTCTATTGCTTTGATAAAATTTC  300

seq1  ATGACTAAAAGCAACTTGGGAAGGAAAGGGTTTATTTGATTTTAAAGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTAAAAGCAACTTGGGAAGGAAAGGGTTTATTTGATTTTAAAGCTT  350

seq1  GTAGTTCACCATCCAAGGAAGTCTGGGCAGGAACTCAAGCAGAAGAATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTCACCATCCAAGGAAGTCTGGGCAGGAACTCAAGCAGAAGAATGC  400

seq1  TGCTTATTTTGGCTTGCTCCGCTTGGCTTACTTAGCCTGCAAATTTAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATTTTGGCTTGCTCCGCTTGGCTTACTTAGCCTGCAAATTTAGAG  450

seq1  CACCCAGGACCACCAGCCCAGGAGTAACACCTCTCACAGGGAGTTGGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGGACCACCAGCCCAGGAGTAACACCTCTCACAGGGAGTTGGCCC  500

seq1  CGCCCACAGGTTAATCTGATGAAAGCATTTTCTCAGTTGAAGCTCCTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCACAGGTTAATCTGATGAAAGCATTTTCTCAGTTGAAGCTCCTAGG  550

seq1  AGACTAGCGAGTGCTGACATAGACCAGTGCAGTGGTACACTACTACTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAGCGAGTGCTGACATAGACCAGTGCAGTGGTACACTACTACTGAC  600

seq1  GTTTGATTTGAGCATTTACTTCCCTGACTAGGTTGATGCTTTAAAGTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATTTGAGCATTTACTTCCCTGACTAGGTTGATGCTTTAAAGTAGA  650

seq1  ACTT-AAAGAACTACTGGCTGGTATAGGGTTTTGTTTGTTTGCTTTCTTG  699
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAAGAACTACTGGCTGGTATAGGGTTTTGTTTGTTTGCTTTCTTG  700

seq1  -TTTTTGTAGTACTGATAATCAAAACCTAGAACTGCAAAGCAAGCACATT  748
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTAGTACTGATAATCAAAACCTAGAACTGCAAAGCAAGCACATT  750

seq1  AGACATTAGCTCTGTTTCTCGAGTTCTAGTGTAGAGTTAATTACTTTGCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTAGCTCTGTTTCTCGAGTTCTAGTGTAGAGTTAATTACTTTGCT  800

seq1  TTCTTCTCGTATGTTGTGGAAAATATTTTTAAAAAAAACAAATGGCAAGT  848
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTCTTCTCGTATGTTGTGGAAAATATTTTTAAAAAAAACAAATGGC-AGT  849

seq1  TCCCGGGCTAGGCAGGCTGCAT-GGCTCCAACAGGGTGTTCTCATCTCAA  897
      |||||||||| ||||||||||| |||| ||||| ||||||||||||||||
seq2  TCCCGGGCTA-GCAGGCTGCATGGGCTTCAACA-GGTGTTCTCATCTCAA  897

seq1  CAGATTC-TCT-GACCCGAGGCTCGCAAGATTTCTCC--ACCCGACTCAC  943
      ||||||| ||| |||||||||||||| ||||||||||   ||||||||||
seq2  CAGATTCTTCTGGACCCGAGGCTCGC-AGATTTCTCCCACCCCGACTCAC  946

seq1  TAATTTCCCTTGGTGGACTG-CTG-CCATGCCAGCCCCATGCAATGACTG  991
      ||||| ||||||  | |||| ||| ||||||||||||||||| |||||||
seq2  TAATTCCCCTTGTGGAACTGCCTGCCCATGCCAGCCCCATGC-ATGACTG  995

seq1  -CCCACCTCGTGGTTAGATATCAC-AATACCCAGTAACCTG  1030
       ||||||   |||||||| || || |||| |||||||||||
seq2  TCCCACCCTCTGGTTAGA-ATTACAAATAACCAGTAACCTG  1035