BAC Information

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BAC

Clone NameB6Ng01-217B05
Chromosome4 (Build37)
Map Location 146,766,444 - 147,012,131
singlet/doubletdoublet
Overlap geneLOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618
Upstream geneRex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588
Downstream geneLOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217B05.bB6Ng01-217B05.g
ACCGA033594GA033595
length1,0851,122
definitionB6Ng01-217B05.b B6Ng01-217B05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,011,033 - 147,012,131)(146,766,444 - 146,767,585)
sequence
gaattcttgaatcctccaaggttcagcccagcatgccatgagaggatgac
tctaggccaagctatttttataaatagaaaacttactatggattaggaca
aaattaaacagcacctttgaaataattataattgctcactttcttaagaa
aaatgactccttgtttcatgaaaagcactttgcccccacacagtcatggt
ttgttgagtgctgcactgtggaggtcttgcaggtgtggtaatgcttagac
cctgcattcagggctttcttcagcgatctcttgttggacaagttcaacgg
tttggatcctgcatgtcacaataggtttcttacattcttttttgttcctc
agtgattctgggaaaaggactctgtgtgttaactgtgtgactgactctag
ggtaaactgaaatcctcagggtaaaaagagacattctcatgacatcttct
ctttccttcatgtttatcctttcacctggtgttggcatctttcatttttg
tcacatgaaaaggtccaggttctttttgaatgacattttcccattttcag
gtctccattttctcagccaaatctgcataaatataaatctaagagcccta
gatggtaaaggccaaggagactctattgaaggatccacatgtgttagagg
ctttgaacaaggggtggggtggggctcaccagtacaaagaggacatgaat
ttgtttttgccaccttctatttcattaatgattctgaaagatttcactaa
gaatattagatgtgatgatatggatttcccatggtagacagtgctgtcag
ctgtcacttcatgtcaatatttaattaattttgatgctgggaaattgctg
ttgcccattgaaatcaaagtttcttttacacatactgaaatcagcatcag
ctaatgtgtttgaaaagggccatttacacatgaagcaaatgtcagtcttg
gaattccctccagggcttgtgaccttctttattgattttagcagatctct
gtttagtctatgtatgttttctgaggagcggctcagcttgaacaggaaag
cttttgttacccacagatagtcttgcactatgata
gaattcttccaaaagggaaacttttcaaatacattgacggtttgaatcct
ttattttggcctatctcttagaatgtaatagataatttatacaggcaaga
atcttaacaaatataatatatgctgaaatatctttgacttcatttcagtg
cagaaaaaatatgtaaaaaaaattttttatgggaaaaatagttctcctga
ggaaatgtggcatatgttttacacgggtaatattcttttcaacagtcagt
gctctaaactagagaattattatgaatctgaaaacttttgaaaaccttca
tgcaatgttcaaatcttagataatgtcaactattatgctggcagtaactc
tgaatatatgatagtgaagaaacattttcattaaacttttacttgttcac
cctcaaatattatatgatgaagtcaggtgtgaaagccagaagaatatgat
gttgtgcaacaattcatggagatagaaatgatccattccaaaaggaaact
aaataaagagtgtactatcgccttcaaaatgtctaataaaactggcagca
ttttgtatatttaattcaaatgaagaaattgacacagattgtacttgata
gtgtatttgacaaactgagccaccaagactgcatgttcttaatcctataa
tatgcctacagatgtgaagtgtgctttgagtatccagtattcattattct
tatcacgtcaatgtgacaaatgatttattggtttcacgtttcaggatagt
gactgactatgagtcccttatgctctgtcaacatctccttcctcattgcc
ctgtaaataaagctgaatattttaacaaggttgacttggctgttttcagt
ttgcacttataattagatgaataaatgttgcatcatcgctggaactattt
ctcataagtatttgctgaagtcatgaatatttctgtaaacctgtacttaa
acttaatatttgtgattttcactggtcatacacttgacccacatacgata
tatgaatgtatatagtcgttagcatagaaattagcatcagtgatagagat
gatgatttgtgttactaaacggatgattctatggcaatattccagctact
gctcgatagtactggtttttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_147011033_147012131
seq2: B6Ng01-217B05.b_49_1133 (reverse)

seq1  TATCATAGTGGCAAGGCTATCTGTGGGTAACAAAAGGCTTTCCTGTTCAA  50
      ||||||||| ||||| ||||||||||||||||||| ||||||||||||||
seq2  TATCATAGT-GCAAGACTATCTGTGGGTAACAAAA-GCTTTCCTGTTCAA  48

seq1  GCTGAGGCCAGCTCCTCAGGAAAAGCATACATAGACTAAACAGAGATTCT  100
      ||||||  | |||||||||  ||| ||||||||||||||||||||| |||
seq2  GCTGAG--CCGCTCCTCAG--AAAACATACATAGACTAAACAGAGA-TCT  93

seq1  GGCTAAAATCCAATAAAGAAGGTCACAGGCCCTGGGAGCGAA-TCCAAGA  149
       |||||||| ||||||||||||||||| ||||| |||| ||| |||||||
seq2  -GCTAAAAT-CAATAAAGAAGGTCACAAGCCCT-GGAGGGAATTCCAAGA  140

seq1  CTGACATTTGCTTCCTGTGTAAATGGCCCTTTTCAAACACATTAACTGAT  199
      |||||||||||||| ||||||||||||||||||||||||||||| |||||
seq2  CTGACATTTGCTTCATGTGTAAATGGCCCTTTTCAAACACATTAGCTGAT  190

seq1  GCT--TTTCAGTCTGGGTAAAAGAAACTTTGATTTCAATGGGCAACAGCA  247
      |||  ||||||| || ||||||||||||||||||||||||||||||||||
seq2  GCTGATTTCAGTATGTGTAAAAGAAACTTTGATTTCAATGGGCAACAGCA  240

seq1  ATTTCCCAGCATCAAAATTAATTAAATATTGACATGAAGTGACAGCTGAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCAGCATCAAAATTAATTAAATATTGACATGAAGTGACAGCTGAC  290

seq1  AGCACTACCTACCATGGGAAATCCATATCATCACATCTAATATTCTTAGT  347
      ||||||  ||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGTCTACCATGGGAAATCCATATCATCACATCTAATATTCTTAGT  340

seq1  GAAATCTTTCAGAATCATTAATGAAACAGAAGCTGGCAAAACCAAATTCA  397
      |||||||||||||||||||||||||| ||||| |||||||| ||||||||
seq2  GAAATCTTTCAGAATCATTAATGAAATAGAAGGTGGCAAAAACAAATTCA  390

seq1  TGTCCTCTTTGTACTGGCAGGTGAGCCCCACCCCACCCCTT-TTCAAAGC  446
      |||||||||||||||    |||||||||||||||||||||| ||||||||
seq2  TGTCCTCTTTGTACT----GGTGAGCCCCACCCCACCCCTTGTTCAAAGC  436

seq1  TGCTAACACACCTGGATCCTTCAATAGTGTCTCCTTGGCCTTTACCATCT  496
        ||||||||  ||||||||||||||| ||||||||||||||||||||||
seq2  CTCTAACACATGTGGATCCTTCAATAGAGTCTCCTTGGCCTTTACCATCT  486

seq1  AGGGCTCTTAGATTTGATTTATATTTATGAAGATTTGGCTGAGAAAATGA  546
      ||||||||||     |||||||||||||| ||||||||||||||||||| 
seq2  AGGGCTCTTA-----GATTTATATTTATGCAGATTTGGCTGAGAAAATGG  531

seq1  AGACCTGAAAATGGGAAAA--TCATTCAAAAA-AACCTGGACCTTTTCAT  593
      |||||||||||||||||||  ||||||||||| |||||||||||||||||
seq2  AGACCTGAAAATGGGAAAATGTCATTCAAAAAGAACCTGGACCTTTTCAT  581

seq1  GTGACAAAAATGAAAGATGCCAACACCAGGTGAAAGGATAAACATGAAGG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAAAAATGAAAGATGCCAACACCAGGTGAAAGGATAAACATGAAGG  631

seq1  AAAGAGAAGATGTCATGAGAATGTCTCTTTTT-CCCTGAGGATTTCAGTT  692
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAAGAGAAGATGTCATGAGAATGTCTCTTTTTACCCTGAGGATTTCAGTT  681

seq1  TACTCTTGAGTCAGTCACACAGTTAACACACAGAGAGTCCTTTTCCCAGA  742
      ||| || ||||||||||||||||||||||||  |||||||||||||||||
seq2  TACCCTAGAGTCAGTCACACAGTTAACACAC--AGAGTCCTTTTCCCAGA  729

seq1  ATCACTGAGAAACAAGGAAGAATGTAAGAAAACTATTGTGACACGCAGGA  792
      ||||||||| |||||  |||||||||||||| ||||||||||| ||||||
seq2  ATCACTGAGGAACAAAAAAGAATGTAAGAAACCTATTGTGACATGCAGGA  779

seq1  TCCAAACTGTTGAACTTCTCCAACAAGAGATTGCTGAAAAAAACCCTGAA  842
      ||||||| ||||||||| ||||||||||||| |||||| ||| |||||||
seq2  TCCAAACCGTTGAACTTGTCCAACAAGAGATCGCTGAAGAAAGCCCTGAA  829

seq1  TGCAGGGTCTAAGCATTACCACACCTGCAAGAACTCCACAGTGCAGCACT  892
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGCAGGGTCTAAGCATTACCACACCTGCAAGACCTCCACAGTGCAGCACT  879

seq1  CAACAAACCATGAATGTGTATGGGCAAAGTGCTTTTCATGAAACAAGGAG  942
      ||||||||||||| |||||  |||||||||||||||||||||||||||||
seq2  CAACAAACCATGACTGTGTGGGGGCAAAGTGCTTTTCATGAAACAAGGAG  929

seq1  TCATTTTTCTTAAGAAAGTGAGCAATCATAATTATTTCAAAGGTGCTGTT  992
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCATTTTTCTTAAGAAAGTGAGCAATTATAATTATTTCAAAGGTGCTGTT  979

seq1  TAATTTTGTCCTAATCCATAGTAAGTTTTCTATTTATAAAAATATCTTAG  1042
      |||||||||||||||||||||||||||||||||||||||||||| ||| |
seq2  TAATTTTGTCCTAATCCATAGTAAGTTTTCTATTTATAAAAATAGCTTGG  1029

seq1  CCTAGAGTCATCCTTTCACAGCATGCTGGGCAGAACCTTGGAGGATTAGA  1092
      |||||||||||||| |||  ||||||||||| |||||||||||||||  |
seq2  CCTAGAGTCATCCTCTCATGGCATGCTGGGCTGAACCTTGGAGGATT-CA  1078

seq1  AGAATTC  1099
      |||||||
seq2  AGAATTC  1085

seq1: chr4_146766444_146767585
seq2: B6Ng01-217B05.g_64_1185

seq1  GAATTCTTCCAAAAGGGAAACTTTTCAAATACATTGATGGTTTGAATCCT  50
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAATTCTTCCAAAAGGGAAACTTTTCAAATACATTGACGGTTTGAATCCT  50

seq1  TTATTTTGGCCTATCTCTTAGAATGTAACAGATAATTTATACAGGCAAGA  100
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTATTTTGGCCTATCTCTTAGAATGTAATAGATAATTTATACAGGCAAGA  100

seq1  ATCTTAACAAATATAATATATGCTGAAATATCTTTGACTTCATTTCAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAACAAATATAATATATGCTGAAATATCTTTGACTTCATTTCAGTG  150

seq1  CAGAAAAAATATGT-AAAATATTTTTTTATGGGAAAAAAAGTTCTCCTGG  199
      |||||||||||||| |||| | |||||||||||||||| |||||||||| 
seq2  CAGAAAAAATATGTAAAAAAAATTTTTTATGGGAAAAATAGTTCTCCTGA  200

seq1  GGAAATGTGGCATATGTTTTACACGGGTAATATTCTTTTCAACAGTTAGT  249
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGAAATGTGGCATATGTTTTACACGGGTAATATTCTTTTCAACAGTCAGT  250

seq1  GCTCTAAACTAGAGA---ATTATGAATCTGAAAACTTTTGAAAACCTTCA  296
      |||||||||||||||   ||||||||||||||||||||||||||||||||
seq2  GCTCTAAACTAGAGAATTATTATGAATCTGAAAACTTTTGAAAACCTTCA  300

seq1  TGCAATGTTCAAATCTTAGATAATGTCAACTATTATGCTGGCAGTAACTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGTTCAAATCTTAGATAATGTCAACTATTATGCTGGCAGTAACTC  350

seq1  TGAATATATGATAATGAAGAAACATTTTCATTAAACTTTTACTTGTTCAC  396
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGAATATATGATAGTGAAGAAACATTTTCATTAAACTTTTACTTGTTCAC  400

seq1  CCTCAAATATTATATGATGAAGTCAGGTGTGAAAGCCAGAAGAATATGAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAATATTATATGATGAAGTCAGGTGTGAAAGCCAGAAGAATATGAT  450

seq1  GTTGTGCAACAATTCATGGAGATAGAAATGATCCATTCCAAAAGGAAACT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGCAACAATTCATGGAGATAGAAATGATCCATTCCAAAAGGAAACT  500

seq1  AAATAAAGAGTGTACTATCGCCTTCAAAATGTCTAATAAAACTGGCAGCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGAGTGTACTATCGCCTTCAAAATGTCTAATAAAACTGGCAGCA  550

seq1  TTTTGTATATTTAATTCAAATGAAGAAATTGACACAGATTGTACTTGATA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTATATTTAATTCAAATGAAGAAATTGACACAGATTGTACTTGATA  600

seq1  GTGTATTTGACAAACTGAGCCACCAAGACTGCATGTTCTTAATCCTATAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTTGACAAACTGAGCCACCAAGACTGCATGTTCTTAATCCTATAA  650

seq1  TATGCCTACAGATGTGAAGTGTGCTTTGAGTATCCAGTATTCATTATTCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTACAGATGTGAAGTGTGCTTTGAGTATCCAGTATTCATTATTCT  700

seq1  TATCACGTCAATGTGACAAATGATTTATTGGTTTCACGTTTCAGGATAGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACGTCAATGTGACAAATGATTTATTGGTTTCACGTTTCAGGATAGT  750

seq1  GACTGACTATGAGTCCCTTATGCTCTGTCAACATCTCCTTCCTCATTGCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGACTATGAGTCCCTTATGCTCTGTCAACATCTCCTTCCTCATTGCC  800

seq1  CTGTAAATAAAGCTGAATATTTTAACAAGGTTGACTTGGCTGTTTTCAGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAATAAAGCTGAATATTTTAACAAGGTTGACTTGGCTGTTTTCAGT  850

seq1  TTGCACTTATAATTAGATGAATAAATGTTGCATCATCGCTGGAACTATTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACTTATAATTAGATGAATAAATGTTGCATCATCGCTGGAACTATTT  900

seq1  CTCATAAAGTATTTGCTGAAGTCATGAATATTTTCTGTAAACCTGTAACT  946
      ||||| |||||||||||||||||||||||| ||||||||||||||| |||
seq2  CTCAT-AAGTATTTGCTGAAGTCATGAATA-TTTCTGTAAACCTGT-ACT  947

seq1  TAAACTTAATATTTGTGATTGTCAGCTGGTCAATAACAACCTTGACCCAC  996
      |||||||||||||||||||| ||| |||||||   |||  ||||||||||
seq2  TAAACTTAATATTTGTGATTTTCA-CTGGTCA--TACA--CTTGACCCAC  992

seq1  ATACGAATAATATGAATTGTATATAAGTGTTTAGCATTAGAAAATTTAGC  1046
      ||||||   ||||||| ||||||| |||  |||||| ||||||  |||||
seq2  ATACGA--TATATGAA-TGTATAT-AGTCGTTAGCA-TAGAAA--TTAGC  1035

seq1  AACAGTGTATTAGAGATGATGATTTGTGTTAACTAAAACAGGGATGATTC  1096
      | |||||   |||||||||||||||||||| |||||   | |||||||||
seq2  ATCAGTG--ATAGAGATGATGATTTGTGTT-ACTAA---ACGGATGATTC  1079

seq1  TAT-GCAATATTCCAGGCTTACTGCTCAATTAGTACTAGTTTATTAA  1142
      ||| ||||||||||||   |||||||| | ||||||| |||| ||||
seq2  TATGGCAATATTCCAG--CTACTGCTCGA-TAGTACTGGTTT-TTAA  1122