BAC Information

Click to search

BAC

Clone NameB6Ng01-222N16
Chromosome4 (Build37)
Map Location 14,896,718 - 15,030,347
singlet/doubletdoublet
Overlap geneEfcbp1
Upstream geneLOC625831, LOC433687, LOC100040030, LOC433688, Slc26a7, 1700034K16Rik, Otud6b, LOC100040047, Tmem55a, OTTMUSG00000004551
Downstream geneTmem64, LOC100040095, LOC633695, Calb1, Decr1, Nbn, Osgin2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222N16.bB6Ng01-222N16.g
ACCGA037758GA037759
length1,1141,135
definitionB6Ng01-222N16.b B6Ng01-222N16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,029,211 - 15,030,347)(14,896,718 - 14,897,857)
sequence
gaattcattgtttttaatggctgagtagtattctattgtgtaaatgtacc
acattttctgtatacattcctctgttgaggggcatctgggttcttcccag
cttctggctattataaatacggttattatgaacatagtggagcatgtgtt
cttattacatgttggagcatcttctgggtatatgcccaggagtggtatag
ctgggtcctcaggtagtactatgtccaattttctgaggaaccgccaaact
gatttccagagtggttgtaccagcttgcaatcccaccagcaatagaggag
tgttcctctttctccacatccttgccagcatcttctgccacctgaatttt
ttatcttagccattctgactggtagaatctcagggttgttttggtttgca
tttctctgatgactacggatgttgagcatctgtttttaagatgtgttttc
acttccgtaattatttgagcctatttgtgtactagtagcatcatttttct
acttttactaacccagaatgttaaagatatgcatttttgacaattggttc
gaaattttgttctttcttgtggagatattttaccaccagtatcatttttt
ttttcctaaatgaagtctcttaacaacctgaaatatggatagcaactgag
gtatctgcaatctaatggaagaatatgaaattatcagccaaattctactt
tacaataaaaagattatcataccttgtgagatttaaatgcagataatttt
aaggaaattttatgtgaaaatgatttatcattagttatagttgaagaaat
aaattggctcccattttctctgataaagatgttagtaaagttaaattttg
tttcaaggcagcacacgtatttctaaaaaaattataatggatatgtgtga
ttaataacaaatagctggagatgcagtcattagagagcaacattctacac
attatttgtatcatcttgtttaaatttccacagatacattgtaaaatgtg
ttgcattcacagcctgcagtactcactgacagagagtaattcatttcaag
ttctgaaagctgcacaaagcatggactctagtctactaaacacagtgtta
ccctttcatgtcat
gaattcattgttgcaatcaagcagtgaaggacgcgtgcttctcatccacc
caccccatttatgcctttatggcccagtttgatctctgcctttctgtctt
tgtctttctgtctctctatttccttttagttcactttatctacagctcat
gtttgtcagacctccatagaacaattcctaacaaagaggacttaataata
tgcatagatctcagattgtgagctaaggcattgtcataattagagtttta
ttgctgtgaagagacactatgaccaaggcaactcttttaaaggcaaatat
ttaatttgggctagcttagagtttcagaggttcagtccactatcatcata
gcaagaagcatggcaacctgcaggcagacatgatgctggagaaggagctg
agagttccatatcttgattcgaaggtagccagcaggagactgtcttctgc
aggcaagcagaggaggatgtcttccacactgggcattttccaaacaaaac
aaaaacaaaaacaaaaacaacccttaaggcttgccctacacagtggcacc
cttcctcctataaggccacatctactccaacaaggccacacctcctaatg
gtgccacttcccatgagctaagcatatttaaaccaggcagtaactataga
gagctttggaggatcccttgtaagagaggtctgtgtgggaagccgcaaac
gccattacaagatggcgctggctaccactggccaccacccatgattatgg
gtaaacaaccaatgtgcgcatgtgcataagagtttttttgccgagtcact
gcctggcccgatgcatgttaatgaggtactggtagcataaccaatcaggt
atggacacgtcactcctaggcctatataagcagcaccatttctgggctca
ggtcttttcgcctatgcagtcaatgctctcccaataaacgtgtgcagaag
gatcctattgtgcgtcgttcttgctggcgagtcgggcgctcacaggtctg
cattatgttgtctaatgaggtgcccatgcagatagatggtcgaccctcaa
gtgcctcattccttgttttcagcagacctctgagaacttccagtaacacg
tcccctgcactaggtacatcacttgtgactttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_15029211_15030347
seq2: B6Ng01-222N16.b_44_1157 (reverse)

seq1  ATGACAATGGAAAGGGTTACACTGTGGTTTTAAGTAGACTTTGGGAAGTC  50
      ||||||   |||||||| ||||||||   || ||||||||      ||| 
seq2  ATGACA--TGAAAGGGTAACACTGTG---TTTAGTAGACT----AGAGT-  40

seq1  CCATGCCTTTGTGCAGGCTTTTCAAGGAACTTTGGAAAATGAATTAACTC  100
      ||||| ||||||||||   |||||  ||||||    ||||||||| ||||
seq2  CCATG-CTTTGTGCAG--CTTTCA--GAACTT---GAAATGAATT-ACTC  81

seq1  TCTGTCAGTGAGTAACTGCAGGCTGTGAATTGCAACACATTTTTACAATG  150
      ||||||||||||| ||||||||||||||| ||||||||| ||||||||||
seq2  TCTGTCAGTGAGT-ACTGCAGGCTGTGAA-TGCAACACA-TTTTACAATG  128

seq1  TATCTGTGGAAATTTAAACAAGATGATACAAATAATTGTGTAGAATGTTG  200
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TATCTGTGGAAATTTAAACAAGATGATACAAATAA-TGTGTAGAATGTTG  177

seq1  CTCTCTAATGACTGCATCTCCAGCTATTTGTTATTAATCACACATATCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTAATGACTGCATCTCCAGCTATTTGTTATTAATCACACATATCCA  227

seq1  TTATAATTTTTTTAGAAATACGTGTGCTGCCTTGAAACAAAATTTAACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTTTTTTAGAAATACGTGTGCTGCCTTGAAACAAAATTTAACTT  277

seq1  TACTAACATCTTTATCAGAGAAAATGGGAGCCAATTTATTTCTTCAACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAACATCTTTATCAGAGAAAATGGGAGCCAATTTATTTCTTCAACTA  327

seq1  TAACTAATGATAAATCATTTTCACATAAAATTTCCTTAAAATTATCTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAATGATAAATCATTTTCACATAAAATTTCCTTAAAATTATCTGCA  377

seq1  TTTAAATCTCACAAGGTATGATAATCTTTTTATTGTAAAGTAGAATTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATCTCACAAGGTATGATAATCTTTTTATTGTAAAGTAGAATTTGG  427

seq1  CTGATAATTTCATATTCTTCCATTAGATTGCAGATACCTCAGTTGCTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAATTTCATATTCTTCCATTAGATTGCAGATACCTCAGTTGCTATC  477

seq1  CATATTTCAGGTTGTTAAGAGACTTCATTTAGGAAAAAAAAAATGATACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTCAGGTTGTTAAGAGACTTCATTTAGGAAAAAAAAAATGATACT  527

seq1  GGTGGTAAAATATCTCCACAAGAAAGAACAAAATTTCGAACCAATTGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTAAAATATCTCCACAAGAAAGAACAAAATTTCGAACCAATTGTCA  577

seq1  AAAATGCATATCTTTAACATTCTGGGTTAGTAAAAGTAGAAAAATGATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCATATCTTTAACATTCTGGGTTAGTAAAAGTAGAAAAATGATGC  627

seq1  TACTAGTACACAAATAGGCTCAAATAATTACGGAAGTGAAAACACATCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGTACACAAATAGGCTCAAATAATTACGGAAGTGAAAACACATCTT  677

seq1  AAAAACAGATGCTCAACATCCGTAGTCATCAGAGAAATGCAAACCAAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAGATGCTCAACATCCGTAGTCATCAGAGAAATGCAAACCAAAAC  727

seq1  AACCCTGAGATTCTACCAGTCAGAATGGCTAAGATAAAAAATTCAGGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGAGATTCTACCAGTCAGAATGGCTAAGATAAAAAATTCAGGTGG  777

seq1  CAGAAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCTCTATTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCTCTATTGCT  827

seq1  GGTGGGATTGCAAGCTGGTACAACCACTCTGGAAATCAGTTTGGCGGTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGATTGCAAGCTGGTACAACCACTCTGGAAATCAGTTTGGCGGTTC  877

seq1  CTCAGAAAATTGGACATAGTACTACCTGAGGACCCAGCTATACCACTCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAAATTGGACATAGTACTACCTGAGGACCCAGCTATACCACTCCT  927

seq1  GGGCATATACCCAGAAGATGCTCCAACATGTAATAAGAACACATGCTCCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATATACCCAGAAGATGCTCCAACATGTAATAAGAACACATGCTCCA  977

seq1  CTATGTTCATAATAACCGTATTTATAATAGCCAGAAGCTGGGAAGAACCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTTCATAATAACCGTATTTATAATAGCCAGAAGCTGGGAAGAACCC  1027

seq1  AGATGCCCCTCAACAGAGGAATGTATACAGAAAATGTGGTACATTTACAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCCCTCAACAGAGGAATGTATACAGAAAATGTGGTACATTTACAC  1077

seq1  AATAGAATACTACTCAGCCATTAAAAACAATGAATTC  1137
      |||||||||||||||||||||||||||||||||||||
seq2  AATAGAATACTACTCAGCCATTAAAAACAATGAATTC  1114

seq1: chr4_14896718_14897857
seq2: B6Ng01-222N16.g_71_1205

seq1  GAATTCATTGTTGCAATCAAGCAGTGAAGGACGCGTGCTTCTCATCCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTTGCAATCAAGCAGTGAAGGACGCGTGCTTCTCATCCACC  50

seq1  CACCCCATTTATGCCTTTATGGCCCAGTTTGATCTCTGCCTTTCTGTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCATTTATGCCTTTATGGCCCAGTTTGATCTCTGCCTTTCTGTCTT  100

seq1  TGTCTTTCTGTCTCTCTATTTCCTTTTAGTTCACTTTATCTACAGCTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTCTGTCTCTCTATTTCCTTTTAGTTCACTTTATCTACAGCTCAT  150

seq1  GTTTGTCAGACCTCCATAGAACAATTCCTAACAAAGAGGACTTAATAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCAGACCTCCATAGAACAATTCCTAACAAAGAGGACTTAATAATA  200

seq1  TGCATAGATCTCAGATTGTGAGCTAAGGCATTGTCATAATTAGAGTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAGATCTCAGATTGTGAGCTAAGGCATTGTCATAATTAGAGTTTTA  250

seq1  TTGCTGTGAAGAGACACTATGACCAAGGCAACTCTTTTAAAGGCAAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTGAAGAGACACTATGACCAAGGCAACTCTTTTAAAGGCAAATAT  300

seq1  TTAATTTGGGCTAGCTTAGAGTTTCAGAGGTTCAGTCCACTATCATCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTGGGCTAGCTTAGAGTTTCAGAGGTTCAGTCCACTATCATCATA  350

seq1  GCAAGAAGCATGGCAACCTGCAGGCAGACATGATGCTGGAGAAGGAGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAAGCATGGCAACCTGCAGGCAGACATGATGCTGGAGAAGGAGCTG  400

seq1  AGAGTTCCATATCTTGATTCGAAGGTAGCCAGCAGGAGACTGTCTTCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCCATATCTTGATTCGAAGGTAGCCAGCAGGAGACTGTCTTCTGC  450

seq1  AGGCAAGCAGAGGAGGATGTCTTCCACACTGGGCATTTTCCAAACAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGCAGAGGAGGATGTCTTCCACACTGGGCATTTTCCAAACAAAAC  500

seq1  AAAAACAAAAACAAAAACAACCCTTAAGGCTTGCCCTACACAGTGGCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAAACAAAAACAACCCTTAAGGCTTGCCCTACACAGTGGCACC  550

seq1  CTTCCTCCTATAAGGCCACATCTACTCCAACAAGGCCACACCTCCTAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCCTATAAGGCCACATCTACTCCAACAAGGCCACACCTCCTAATG  600

seq1  GTGCCACTTCCCATGAGCTAAGCATATTTAAACCAGGCAGTAACTATAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACTTCCCATGAGCTAAGCATATTTAAACCAGGCAGTAACTATAGA  650

seq1  GAGCTTTGGAGGATCCCTTGTAAGAGAGGTCTGTGTGGGAAGCCGCAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTGGAGGATCCCTTGTAAGAGAGGTCTGTGTGGGAAGCCGCAAAC  700

seq1  GCCATTACAAGATGGCGCTGGCTACCACTGGCCACCACCCATGATTATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTACAAGATGGCGCTGGCTACCACTGGCCACCACCCATGATTATGG  750

seq1  GTAAACAACCAATGTGCGCATGTGCATAAGAGTTTTTTTGCCGAGTCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACAACCAATGTGCGCATGTGCATAAGAGTTTTTTTGCCGAGTCACT  800

seq1  GCCTGGCCCGATGCATGTTAATGAGGTACTGGTAGCATAACCAATCAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGCCCGATGCATGTTAATGAGGTACTGGTAGCATAACCAATCAGGT  850

seq1  ATGGACACGTCACTCCTAGGCCTATATAAGCAGCACCATTTCTGGGCTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACACGTCACTCCTAGGCCTATATAAGCAGCACCATTTCTGGGCTCA  900

seq1  GGGTCTTTCGCCTATGCAGTCAATGCTCTCCCAATAAACGTGTGCAGAAG  950
      ||   |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTTTCGCCTATGCAGTCAATGCTCTCCCAATAAACGTGTGCAGAAG  950

seq1  GATCCTATTGTGGCGTCGTTCTTGCTGGCGAGTCGGGCGCTCACAGGTCT  1000
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GATCCTATTGT-GCGTCGTTCTTGCTGGCGAGTCGGGCGCTCACAGGTCT  999

seq1  GCA-TATGTTGTTCTAAATGAGGTGCCCATGCAGATTAGATGGTCGACCC  1049
      ||| ||||||| ||| ||||||||||||||||||| ||||||||||||||
seq2  GCATTATGTTG-TCT-AATGAGGTGCCCATGCAGA-TAGATGGTCGACCC  1046

seq1  TC-AGTG-CTCATTCCTTGTTTTCCAGGCAGA-CTCTGAG-ACTTTCAGT  1095
      || |||| ||||||||||||||||   ||||| ||||||| |||| ||||
seq2  TCAAGTGCCTCATTCCTTGTTTTC--AGCAGACCTCTGAGAACTTCCAGT  1094

seq1  AACACCTTCCCCTGCACTTAGGTACAATCACTTGTTGCCTTTTTT  1140
      |||| | |||||||||| ||||||| |||||||| || |||||||
seq2  AACA-CGTCCCCTGCAC-TAGGTAC-ATCACTTG-TGACTTTTTT  1135