BAC Information

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BAC

Clone NameB6Ng01-223M22
Chromosome4 (Build37)
Map Location 43,759,108 - 43,883,635
singlet/doubletdoublet
Overlap geneA630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268, Olfr155
Upstream geneCcl19, Ccl21b, LOC100039205, LOC433698, BC049635, N28178, Dnajb5, 1700022I11Rik, Vcp, Fancg, Pigo, Stoml2, B230312A22Rik, Unc13b, 4930417M19Rik, Rusc2, 4833436C18Rik, Tesk1, Cd72, Sit1, Rmrp, LOC622404, E130306D19Rik, Car9, Tpm2, Tln1, Creb3, Gba2, 1110029E03Rik, LOC100039672, LOC100040179, Npr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik, Olfr70, Olfr71, LOC100039781, 5430416O09Rik
Downstream geneReck, Glipr2, Ccin, Clta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38, Melk, Pax5, 5730488B01Rik, LOC545618, Zcchc7
LinkOpen Mouse BAC browser

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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223M22.bB6Ng01-223M22.g
ACCGA038447GA038448
length6601,130
definitionB6Ng01-223M22.b B6Ng01-223M22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,759,108 - 43,759,765)(43,882,501 - 43,883,635)
sequence
gaattcactatgcaactcaggctgactgcagacttggtgtatttttctgc
ctcagcctcctgagggctgagattgtaagtcttgttttgttagagggggg
aaaaaaactaaaaacaaaaaacaaaaaaacccgctaaaagcactaaaacc
tcccagagtttgatatactcacatgaacctgttgtttggccacttgcagc
acagttatctggtgtattctcccatgcacctcactcatagttacaaagtt
aattcctgaaattctatcaacccacaaacattttgaatagctctaagaat
gatgttattattttaagtgtaactaaaacagtgttgtcacgtcttaaaac
atttaattatgagttcttagtacaatcaactctcaagcgagagcccaatt
ttctacataagttttcattcttattttcctatattcataactgaccacta
taagcttgcaaagatctggttgtgccagagtgacctggttcgaaaccaag
agaggtgggatttgaactgaataggagaacttcctggatatgaatgaatc
ttcgacacgctgtctgctcatgcagtttgcttatctgtggaagcaagagc
tggggctgccgaggagggattcgcagaccgggaccttgccgagggtgggg
gtgggggtgg

gaattctgtgatcagtcagaaacagcccttcacatcctcatcagagtcca
atgatgtgattcctccagtgtgggaggagaagttcagaggagaaaaaggg
gttgcttgtgtgggaggcacttgtgggtcacaggccttatttcccatgtg
gaatccaaggaagtaacagagcttaagacacttctctccacacaagcacg
tgagggcactgaatagatgcagcctctagcgtatgtcttgtcttactccc
cagagaaaatgggtgttttctatgcccttcacaaaaggcaacctaaaagt
ctagcaggctaaggtcctggaaagacctacagttcagaaggaggggcagc
ctaaagctattgtgctcctggcctgtacaactggaagccagacgggaata
taggtgtcaacaggggctaaaaacaacagctgaggaccaggtgtcctccc
ttctctcaggcccaacttctggcttcggatctataaatttctttcaaaac
tgggtaagactcttgcaaatggccttgactaaattaagatttccctgaac
taaggtcgagttttaatcaatcagtgggaacgggatgcgcaggggccgtt
gtttatccgttaaagatcagagcgtactgactagaccttgttgctaggaa
gcagcttcccagccagagatgatattttccagttgtgcatcatgcttact
gttagtttaaaaactgggaatgtggccttggagaaccttagaaggcctgc
ctgttgctttgaagcagaaccagcgtgacggaggcctgttgacacttcta
gtgaactctcagacaagaaaagtctatcccccaaggcatccaacaccaac
atgttacaaaattcatcgttgtactctccaacctgagatgccctcaacct
gagttgtctggacaacgttctgcctgccctccaaggagctccacaaagtc
atgagcctgtgtgccttggattgaccctgttctctgttccttttgctatt
catttttattaacatttaaattaaattattcaggactgggggaacggctt
cagtggtcatgagaatatactgctctggagagaccaagtttaacctggca
ctcatacacagcctctgaacatttacctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_43759108_43759765
seq2: B6Ng01-223M22.b_46_705

seq1  GAATTCACTATGCAACTCAGGCTGACTGCAGACTTG--GGATTTTTCTGC  48
      ||||||||||||||||||||||||||||||||||||  | ||||||||||
seq2  GAATTCACTATGCAACTCAGGCTGACTGCAGACTTGGTGTATTTTTCTGC  50

seq1  CTCAGCCTCCTGAGGGCTGAGATTGTAAGTCTTGTTTTGTTAGAGGGGGG  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCTCCTGAGGGCTGAGATTGTAAGTCTTGTTTTGTTAGAGGGGGG  100

seq1  AAAAAAACTAAAAACAAAAAACAAAAAAACCCGCTAAAAGCACTAAAACC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACTAAAAACAAAAAACAAAAAAACCCGCTAAAAGCACTAAAACC  150

seq1  TCCCAGAGTTTGATATACTCACATGAACCTGTTGTTTGGCCACTTGCAGC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAGTTTGATATACTCACATGAACCTGTTGTTTGGCCACTTGCAGC  200

seq1  ACAGTTATCTGGTGTATTCTCCCATGCACCTCACTCATAGTTACAAAGTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTATCTGGTGTATTCTCCCATGCACCTCACTCATAGTTACAAAGTT  250

seq1  AATTCCTGAAATTCTATCAACCCACAAACATTTTGAATAGCTCTAAGAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTGAAATTCTATCAACCCACAAACATTTTGAATAGCTCTAAGAAT  300

seq1  GATGTTATTATTTTAAGTGTAACTAAAACAGTGTTGTCACGTCTTAAAAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTATTATTTTAAGTGTAACTAAAACAGTGTTGTCACGTCTTAAAAC  350

seq1  ATTTAATTATGAGTTCTTAGTACAATCAACTCTCAAGCGAGAGCCCAATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTATGAGTTCTTAGTACAATCAACTCTCAAGCGAGAGCCCAATT  400

seq1  TTCTACATAAGTTTTCATTCTTATTTTCCTATATTCATAACTGACCACTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACATAAGTTTTCATTCTTATTTTCCTATATTCATAACTGACCACTA  450

seq1  TAAGCTTGCAAAGATCTGGTTGTGCCAGAGTGACCTGGTTCGAAACCAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTGCAAAGATCTGGTTGTGCCAGAGTGACCTGGTTCGAAACCAAG  500

seq1  AGAGGTGGGATTTGAACTGAATAGGAGAACTTCCTGGATATGAATGAATC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGGGATTTGAACTGAATAGGAGAACTTCCTGGATATGAATGAATC  550

seq1  TTCGACACGCTGTCTGCTCATGCAGTTTGCTTATCTGTGGAAGCAAGAGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGACACGCTGTCTGCTCATGCAGTTTGCTTATCTGTGGAAGCAAGAGC  600

seq1  TGGGGCTGCCGAGGAGGGATTCGCAGACCGGGACCTTGCCGAGGGTGGGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTGCCGAGGAGGGATTCGCAGACCGGGACCTTGCCGAGGGTGGGG  650

seq1  GTGGGGGTGG  658
      ||||||||||
seq2  GTGGGGGTGG  660


seq1: chr4_43882501_43883635
seq2: B6Ng01-223M22.g_68_1197 (reverse)

seq1  ACAGGTAATTG-TCAGAAGCCTGTGTATGAGTGCCAGGTTTAAACTTGGG  49
      |||||||| || |||| || |||||||||||||||||| |||||||||| 
seq2  ACAGGTAAATGTTCAG-AGGCTGTGTATGAGTGCCAGG-TTAAACTTGG-  47

seq1  TCCTCTCCAAGAGCAGTATATCCTCATGACCACTG-AGCCCTTTCCCCAG  98
        |||||| |||||||||||| ||||||||||||| |||| || ||||||
seq2  -TCTCTCC-AGAGCAGTATATTCTCATGACCACTGAAGCCGTTCCCCCAG  95

seq1  TCCCTGAAATAATTTAAATTTAAATGTT-ATAAAAATGAATAAGCAAAAG  147
      | |||| |||||||| |||||||||||| |||||||||||| ||||||||
seq2  T-CCTG-AATAATTT-AATTTAAATGTTAATAAAAATGAAT-AGCAAAAG  141

seq1  GAACAGAGAACAGGGTCAATCCAAGGCACACAGGCTCATGACTTTGTGGA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAGAACAGGGTCAATCCAAGGCACACAGGCTCATGACTTTGTGGA  191

seq1  GCTCCTTGGA-GGCAGGCAGAACGTTGTCCAGACAACTCAGGTTGAGGGC  246
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTGGAGGGCAGGCAGAACGTTGTCCAGACAACTCAGGTTGAGGGC  241

seq1  ATCTCAGGTTGGAGAGTACAACGATGAATTTTGTAACATGTTGGTGTTGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGGTTGGAGAGTACAACGATGAATTTTGTAACATGTTGGTGTTGG  291

seq1  ATGCCTTGGGGGATAGACTTTTCTTGTCTGAGAGTTCACTAGAAGTGTCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTGGGGGATAGACTTTTCTTGTCTGAGAGTTCACTAGAAGTGTCA  341

seq1  ACAGGCCTCCGTCACGCTGGTTCTGCTTCAAAGCAACAGGCAGGCCTTCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCCTCCGTCACGCTGGTTCTGCTTCAAAGCAACAGGCAGGCCTTCT  391

seq1  AAGGTTCTCCAAGGCCACATTCCCAGTTTTTAAACTAACAGTAAGCATGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCTCCAAGGCCACATTCCCAGTTTTTAAACTAACAGTAAGCATGA  441

seq1  TGCACAACTGGAAAATATCATCTCTGGCTGGGAAGCTGCTTCCTAGCAAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAACTGGAAAATATCATCTCTGGCTGGGAAGCTGCTTCCTAGCAAC  491

seq1  AAGGTCTAGTCAGTACGCTCTGATCTTTAACGGATAAACAACGGCCCCTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTAGTCAGTACGCTCTGATCTTTAACGGATAAACAACGGCCCCTG  541

seq1  CGCATCCCGTTCCCACTGATTGATTAAAACTCGACCTTAGTTCAGGGAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATCCCGTTCCCACTGATTGATTAAAACTCGACCTTAGTTCAGGGAAA  591

seq1  TCTTAATTTAGTCAAGGCCATTTGCAAGAGTCTTACCCAGTTTTGAAAGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATTTAGTCAAGGCCATTTGCAAGAGTCTTACCCAGTTTTGAAAGA  641

seq1  AATTTATAGATCCGAAGCCAGAAGTTGGGCCTGAGAGAAGGGAGGACACC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATAGATCCGAAGCCAGAAGTTGGGCCTGAGAGAAGGGAGGACACC  691

seq1  TGGTCCTCAGCTGTTGTTTTTAGCCCCTGTTGACACCTATATTCCCGTCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCTCAGCTGTTGTTTTTAGCCCCTGTTGACACCTATATTCCCGTCT  741

seq1  GGCTTCCAGTTGTACAGGCCAGGAGCACAATAGCTTTAGGCTGCCCCTCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCAGTTGTACAGGCCAGGAGCACAATAGCTTTAGGCTGCCCCTCC  791

seq1  TTCTGAACTGTAGGTCTTTCCAGGACCTTAGCCTGCTAGACTTTTAGGTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAACTGTAGGTCTTTCCAGGACCTTAGCCTGCTAGACTTTTAGGTT  841

seq1  GCCTTTTGTGAAGGGCATAGAAAACACCCATTTTCTCTGGGGAGTAAGAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTGTGAAGGGCATAGAAAACACCCATTTTCTCTGGGGAGTAAGAC  891

seq1  AAGACATACGCTAGAGGCTGCATCTATTCAGTGCCCTCACGTGCTTGTGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATACGCTAGAGGCTGCATCTATTCAGTGCCCTCACGTGCTTGTGT  941

seq1  GGAGAGAAGTGTCTTAAGCTCTGTTACTTCCTTGGATTCCACATGGGAAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAAGTGTCTTAAGCTCTGTTACTTCCTTGGATTCCACATGGGAAA  991

seq1  TAAGGCCTGTGACCCACAAGTGCCTCCCACACAAGCAACCCCTTTTTCTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCCTGTGACCCACAAGTGCCTCCCACACAAGCAACCCCTTTTTCTC  1041

seq1  CTCTGAACTTCTCCTCCCACACTGGAGGAATCACATCATTGGACTCTGAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAACTTCTCCTCCCACACTGGAGGAATCACATCATTGGACTCTGAT  1091

seq1  GAGGATGTGAAGGGCTGTTTCTGACTGATCACAGAATTC  1135
      |||||||||||||||||||||||||||||||||||||||
seq2  GAGGATGTGAAGGGCTGTTTCTGACTGATCACAGAATTC  1130


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