BAC Information

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BAC

Clone NameB6Ng01-226C11
Chromosome4 (Build37)
Map Location 42,727,824 - 42,863,289
singlet/doubletdoublet
Overlap geneLOC545614, 1700008B15Rik, Ccl19, Ccl21b, LOC100039205, LOC433698
Upstream geneLOC100039789, LOC623085, LOC100042466, LOC100042472, LOC100042493, Ccl19-ps1, LOC621580, LOC545611, LOC100042524, LOC100042519, LOC100039817, LOC100042536, LOC100039824, LOC100042539, LOC100042544, LOC100039848, LOC100039863, LOC100042555, 1700045I11Rik, LOC100039894, LOC100039909, EG545605, LOC674214, LOC100038965, LOC100039053, LOC100039193, LOC100039374, LOC100039930, LOC100038993, LOC100039939, Ccl19-ps3, Ccl21c, LOC100039323, LOC665845, LOC100039973, LOC100039986, 4933409K07Rik, LOC100039344, LOC100039995, EG623054, Ccl19-ps2, LOC100039331, LOC100039131, LOC100040035, LOC100040048, Il11ra2, LOC665962
Downstream geneBC049635, N28178, Dnajb5, 1700022I11Rik, Vcp, Fancg, Pigo, Stoml2, B230312A22Rik, Unc13b, 4930417M19Rik, Rusc2, 4833436C18Rik, Tesk1, Cd72, Sit1, Rmrp, LOC622404, E130306D19Rik, Car9, Tpm2, Tln1, Creb3, Gba2, 1110029E03Rik, LOC100039672, LOC100040179, Npr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik, Olfr70, Olfr71, LOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226C11.bB6Ng01-226C11.g
ACCGA040166GA040167
length1,1631,128
definitionB6Ng01-226C11.b B6Ng01-226C11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,727,824 - 42,728,997)(42,862,156 - 42,863,289)
sequence
gaattccagcagccttcctgcgtgctctgggaagatgtccctggtgggat
gtaaaaagggcttccttgccaaggaagtttttactgtcttagcctcactg
ggtgcttcacacagcattcagcgctggttttggaggaggagagctggcag
gccccactgaagcttgctgagttgtttctttaggaggtggcgttccagtg
cttcacactcagccagcgacaggaacgggacagtaatctgtgctccttca
cgctcacagggagtcttgccattcagagaggtcggggaagagggaaaggc
tgacttacatggtgttttgggtaagaaaaggcccgagagtacccctgagg
gctgagcatctgtggagggcttggacatatcccttttcttgcaggtacct
tgagaactcaaggaagtaacatccaaggactcactgtgaagagatggaag
gccacagaataactggctataatattcactctgaagattgtcccctgagt
cattagcttttgccctggggagtggatagaaattccttagatgttcacct
tcatgagagggcaagcaagtatgaatttggtgccagggccttccttgttg
caggtttataacaggccatttggaaacccagaaggtctggacgggctggc
ctgccgaatacaagctgctggtcttgtgggaaacgatcccagttctgtcc
tcaatgaccttagaactgctgctcagagtgcaggaagatggattttctcg
agatcgacgaaataatgttgggtctggcatgagctgcctcagggactcct
ccacacgtctcggaagaccccacttctggaaatgtatgcatttttttacc
tgtagttcaagaagcccacggactttaggactaagtaatggcagatggga
agacagcattgagtccatatgtaaggacatagtatgtgtcaagcttgggt
ccaggggtagtaagacacagagggcttcatgtgatgaaggtctggcttcc
tggtcaagcttgcttgcttgcactattgtttctcatcattaaaccatagg
ttctggagcctgagaactcacagtctcttggagaacatgggcatgtgccg
agatgaaacttgggtctagcttgggagagcgatcagttcagcattcttga
accggaatggttg
gaattccacctgcagaagcggctgattcaccttcgctgggggctgcccca
gaggatccagcgctccataaatatgctgctctcctcaacagacccgcagt
ccctgccctgcggtggcagtaggctacctaatgtgagcatctcacagcca
gggaaaccagaggcctatgggtctggtgatacgttcttacccacagcggg
caaaggaacaacccccatgccacacttgtttgccaaggcacaggaaatgt
tgaaaagccattttgataccaaatgtgaacagatccgggagggcaaggtc
ccggcctgtgtccaaagcgcctggaaaggcagaattcctggggatttggc
agcagggactttattcccaaacattccacaaggtcagcccctggagcttc
aggcagaaaacaaccctgacctacatcaagaagctgtttcctggaaacca
atggaccttgaccaggaggctcaggccttttcaggtgttttcattgaaca
ctgtaggcgaccccaagccctgtctgaggaaaccattaagaaactggaga
caactctgagacataagtatttggccttcctgtcaggcctgcaggccctt
tactgcatggccccaactaaagcaacatccccaactgttgaccaatctgt
aatcacaactatgccctggtctgtcaaaagcccacagaagcccctatctc
agaagtctccacttgaagccctatgcctgagtgggcttgagccctgtact
caagatgacaaggagacttctgcaaacattgcagaagagttccagcatgg
agctcaggggcatggaaggacagagaaaggtgcctccagagagacagcct
ctcctgaatagaccctactcatagacacagagatcatggagagagtgagt
ttctacctgaaaaggaaaggctctggatataaagttgggaatttctctaa
agagagtgtgtttccaagagccaactgcaacagacttggagagtgaatct
gttcaggagctctcagagtccacgggaaagcacactgctacaggacgccc
acttatgttcacgttccttgtagccagattcagattagttctgctttaac
agcagctactgcagtgcaggttgtgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_42727824_42728997
seq2: B6Ng01-226C11.b_47_1209

seq1  GAATTCCAGCAGCCTTCCTGCGTGCTCTGGGAAGATGTCCCTGGTGGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCAGCCTTCCTGCGTGCTCTGGGAAGATGTCCCTGGTGGGAT  50

seq1  GTAAAAAGGGCTTCCTTGCCAAGGAAGTTTTTACTGTCTTAGCCTCACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAGGGCTTCCTTGCCAAGGAAGTTTTTACTGTCTTAGCCTCACTG  100

seq1  GGTGCTTCACACAGCATTCAGCGCTGGTTTTGGAGGAGGAGAGCTGGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTTCACACAGCATTCAGCGCTGGTTTTGGAGGAGGAGAGCTGGCAG  150

seq1  GCCCCACTGAAGCTTGCTGAGTTGTTTCTTTAGGAGGTGGCGTTCCAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCACTGAAGCTTGCTGAGTTGTTTCTTTAGGAGGTGGCGTTCCAGTG  200

seq1  CTTCACACTCAGCCAGCGACAGGAACGGGACAGTAATCTGTGCTCCTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACACTCAGCCAGCGACAGGAACGGGACAGTAATCTGTGCTCCTTCA  250

seq1  CGCTCACAGGGAGTCTTGCCATTCAGAGAGGTCGGGGAAGAGGGAAAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCACAGGGAGTCTTGCCATTCAGAGAGGTCGGGGAAGAGGGAAAGGC  300

seq1  TGACTTACATGGTGTTTTGGGTAAGAAAAGGCCCGAGAGTACCCCTGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTACATGGTGTTTTGGGTAAGAAAAGGCCCGAGAGTACCCCTGAGG  350

seq1  GCTGAGCATCTGTGGAGGGCTTGGACATATCCCTTTTCTTGCAGGTACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCATCTGTGGAGGGCTTGGACATATCCCTTTTCTTGCAGGTACCT  400

seq1  TGAGAACTCAAGGAAGTAACATCCAAGGACTCACTGTGAAGAGATGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACTCAAGGAAGTAACATCCAAGGACTCACTGTGAAGAGATGGAAG  450

seq1  GCCACAGAATAACTGGCTATAATATTCACTCTGAAGATTGTCCCCTGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGAATAACTGGCTATAATATTCACTCTGAAGATTGTCCCCTGAGT  500

seq1  CATTAGCTTTTGCCCTGGGGAGTGGATAGAAATTCCTTAGATGTTCACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGCTTTTGCCCTGGGGAGTGGATAGAAATTCCTTAGATGTTCACCT  550

seq1  TCATGAGAGGGCAAGCAAGTATGAATTTGGTGCCAGGGCCTTCCTTGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGAGGGCAAGCAAGTATGAATTTGGTGCCAGGGCCTTCCTTGTTG  600

seq1  CAGGTTTATAACAGGCCATTTGGAAACCCAGAAGGTCTGGACGGGCTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTATAACAGGCCATTTGGAAACCCAGAAGGTCTGGACGGGCTGGC  650

seq1  CTGCCGAATACAAGCTGCTGGTCTTGTGGGAAACGATCCCAGTTCTGTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCGAATACAAGCTGCTGGTCTTGTGGGAAACGATCCCAGTTCTGTCC  700

seq1  TCAATGACCTTAGAACTGCTGCTCAGAGTGCAGGAAGATGGATTTTCTCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGACCTTAGAACTGCTGCTCAGAGTGCAGGAAGATGGATTTTCTCG  750

seq1  AGATCGACGAAATAATGTTGGGTCTGGCATGAGCTGCCTCAGGGACTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCGACGAAATAATGTTGGGTCTGGCATGAGCTGCCTCAGGGACTCCT  800

seq1  CCACACGTCTCGGAAGACCCCACTTCTGGAAATGTATGCATTTTTTTACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACGTCTCGGAAGACCCCACTTCTGGAAATGTATGCATTTTTTTACC  850

seq1  TGTAGTTCAAGAAGCCCACGGACTTTAGGACTAAGTAATGGCAGATGGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTCAAGAAGCCCACGGACTTTAGGACTAAGTAATGGCAGATGGGA  900

seq1  AGACAGCATTGAGTCCATATGTAAGGACATAGTATGTGTCAAGCTTGGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCATTGAGTCCATATGTAAGGACATAGTATGTGTCAAGCTTGGGT  950

seq1  CCAGGGGTAGTAAAGACACAGAGGGCTTCATGTGATGAAGGTCTTGGCTT  1000
      ||||||||||| ||||||||||||||||||||||||||||||| |||| |
seq2  CCAGGGGTAGT-AAGACACAGAGGGCTTCATGTGATGAAGGTC-TGGC-T  997

seq1  TCCTGGTCAAGCTTTGCTTTGCTTTGCACTATTGTTTCCTCAATCATTAA  1050
      |||||||||||| |||| |||| |||||||||||||| ||| |||||| |
seq2  TCCTGGTCAAGC-TTGC-TTGC-TTGCACTATTGTTT-CTC-ATCATT-A  1041

seq1  AACCATAGGTTCCTTGAGCCTTGAAGAACTCACAGTCTCT--GAGACCAT  1098
      ||||||||||| || ||||||   ||||||||||||||||  |||| |||
seq2  AACCATAGGTT-CTGGAGCCT--GAGAACTCACAGTCTCTTGGAGAACAT  1088

seq1  GGGCATGTTGGCGAGATGAAAATTTTGGTCTAGCT--GGAGA-CGATCAG  1145
      ||||||| || ||||||| ||| || |||||||||  ||||| |||||||
seq2  GGGCATG-TGCCGAGATG-AAACTTGGGTCTAGCTTGGGAGAGCGATCAG  1136

seq1  TCCAGCATTCTTGAACCCCGAATGTGTTG  1174
      | ||||||||||||| || ||||| ||||
seq2  TTCAGCATTCTTGAA-CCGGAATG-GTTG  1163

seq1: chr4_42862156_42863289
seq2: B6Ng01-226C11.g_68_1195 (reverse)

seq1  AAACACAACCTGCACTGCAGTAGCTGGCTGTTTAAGGCAGACCTTATCTG  50
      ||||||||||||||||||||||||| |||| |||| ||||| || |||||
seq2  AAACACAACCTGCACTGCAGTAGCT-GCTG-TTAAAGCAGAACTAATCTG  48

seq1  GATCTGGGGCTAC-AGGAACGTG-ACATAAGGTGGGCGGTCCCTGTAGCA  98
       ||||  |||||| ||||||||| |||||| |||||||   |||||||||
seq2  AATCT--GGCTACAAGGAACGTGAACATAA-GTGGGCG--TCCTGTAGCA  93

seq1  GTGTGCTTTCCCGTGGACTCCTGAGAGGCTCCTGAACAGATTCACTCTCC  148
      ||||||||||||||||||| |||||| |||||||||||||||||||||||
seq2  GTGTGCTTTCCCGTGGACT-CTGAGA-GCTCCTGAACAGATTCACTCTCC  141

seq1  AAGTCTGTTGCAGTTGGCTCTTGG-AACACACTCTCTTTTAGAGAAATTC  197
      |||||||||||||||||||||||| ||||||||||| |||||||||||||
seq2  AAGTCTGTTGCAGTTGGCTCTTGGAAACACACTCTC-TTTAGAGAAATTC  190

seq1  CCAACTTTATATCCAGAGCC-TTCCTTTTCAGGTAGAAACTCACTCTCTC  246
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCAACTTTATATCCAGAGCCTTTCCTTTTCAGGTAGAAACTCACTCTCTC  240

seq1  CATGATCTCTGTGTCTAATGAGTAGGGTCTATTCAGGAGAGGCTGTCTCT  296
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CATGATCTCTGTGTCT-ATGAGTAGGGTCTATTCAGGAGAGGCTGTCTCT  289

seq1  CTGGAGGCACC-TTCTCTGTCCTTCCATGCCCCTGAGCTCCATGCTGGAA  345
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGCACCTTTCTCTGTCCTTCCATGCCCCTGAGCTCCATGCTGGAA  339

seq1  CTCTTCTGCAATGTTTGCAGAAGTCTCCTTGTCATCTTGAGTACAGGGCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGCAATGTTTGCAGAAGTCTCCTTGTCATCTTGAGTACAGGGCT  389

seq1  CAAGCCCACTCAGGCATAGGGCTTCAAGTGGAGACTTCTGAGATAGGGGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCCACTCAGGCATAGGGCTTCAAGTGGAGACTTCTGAGATAGGGGC  439

seq1  TTCTGTGGGCTTTTGACAGACCAGGGCATAGTTGTGATTACAGATTGGTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGGGCTTTTGACAGACCAGGGCATAGTTGTGATTACAGATTGGTC  489

seq1  AACAGTTGGGGATGTTGCTTTAGTTGGGGCCATGCAGTAAAGGGCCTGCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTGGGGATGTTGCTTTAGTTGGGGCCATGCAGTAAAGGGCCTGCA  539

seq1  GGCCTGACAGGAAGGCCAAATACTTATGTCTCAGAGTTGTCTCCAGTTTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGACAGGAAGGCCAAATACTTATGTCTCAGAGTTGTCTCCAGTTTC  589

seq1  TTAATGGTTTCCTCAGACAGGGCTTGGGGTCGCCTACAGTGTTCAATGAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGTTTCCTCAGACAGGGCTTGGGGTCGCCTACAGTGTTCAATGAA  639

seq1  AACACCTGAAAAGGCCTGAGCCTCCTGGTCAAGGTCCATTGGTTTCCAGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCTGAAAAGGCCTGAGCCTCCTGGTCAAGGTCCATTGGTTTCCAGG  689

seq1  AAACAGCTTCTTGATGTAGGTCAGGGTTGTTTTCTGCCTGAAGCTCCAGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCTTCTTGATGTAGGTCAGGGTTGTTTTCTGCCTGAAGCTCCAGG  739

seq1  GGCTGACCTTGTGGAATGTTTGGGAATAAAGTCCCTGCTGCCAAATCCCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGACCTTGTGGAATGTTTGGGAATAAAGTCCCTGCTGCCAAATCCCC  789

seq1  AGGAATTCTGCCTTTCCAGGCGCTTTGGACACAGGCCGGGACCTTGCCCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTCTGCCTTTCCAGGCGCTTTGGACACAGGCCGGGACCTTGCCCT  839

seq1  CCCGGATCTGTTCACATTTGGTATCAAAATGGCTTTTCAACATTTCCTGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGATCTGTTCACATTTGGTATCAAAATGGCTTTTCAACATTTCCTGT  889

seq1  GCCTTGGCAAACAAGTGTGGCATGGGGGTTGTTCCTTTGCCCGCTGTGGG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGCAAACAAGTGTGGCATGGGGGTTGTTCCTTTGCCCGCTGTGGG  939

seq1  TAAGAACGTATCACCAGACCCATAGGCCTCTGGTTTCCCTGGCTGTGAGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACGTATCACCAGACCCATAGGCCTCTGGTTTCCCTGGCTGTGAGA  989

seq1  TGCTCACATTAGGTAGCCTACTGCCACCGCAGGGCAGGGACTGCGGGTCT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACATTAGGTAGCCTACTGCCACCGCAGGGCAGGGACTGCGGGTCT  1039

seq1  GTTGAGGAGAGCAGCATATTTATGGAGCGCTGGATCCTCTGGGGCAGCCC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGGAGAGCAGCATATTTATGGAGCGCTGGATCCTCTGGGGCAGCCC  1089

seq1  CCAGCGAAGGTGAATCAGCCGCTTCTGCAGGTGGAATTC  1134
      |||||||||||||||||||||||||||||||||||||||
seq2  CCAGCGAAGGTGAATCAGCCGCTTCTGCAGGTGGAATTC  1128