BAC Information

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BAC

Clone NameB6Ng01-227G05
Chromosome4 (Build37)8 (Build37)
Map Location 71,247,606 - 71,247,697104,175,035 - 104,176,197
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039565, LOC100039979
Downstream geneLOC667638, EG667649, Tle1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227G05.bB6Ng01-227G05.g
ACCGA041071GA041072
length1,0111,151
definitionB6Ng01-227G05.b B6Ng01-227G05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(71,247,606 - 71,247,697)(104,175,035 - 104,176,197)
sequence
gaattctctctctttaggtttttttattgtcaataccattttctttttta
tatcttggagtgcatccaaataatattcatttatattttatagctttata
gttctaagttacagactcttttcttggcctttatttgtcaatattttaat
atgtaaaataacataaacaggagtgtaaacaggagtggtatagctgggtc
ctcaggtagtactatatccaattttctgaggaacctccagattgatttcc
agagtggttgtaccagcttgcaatcccaccagcaatacaggagtgtttct
ctttctccacatcctcatcagcatcttctgtcacctgaatttctgatctt
agccattctgactggtatgatttggaatctcagggttgttttaagctgca
tttccctgatgactaaggatgttgaacatttctttaggtgcttctcagcc
cttcagtatccctcagttgagaattctttgtttacctttgtaccccattt
ttcaatagggttatttggttcgttggagtctaattttttgaattctttgt
atataatggatgttaactctctatcagatgtagggttggtaaggatcttt
tcccaatctgtggttgccattttgtcctattgacagcatcctttgcctta
cagaagctttgcaattttatgagatcatatttgtggattcctgatcttag
atcataagccattggtgttcagttcaggaaattttcccctgtgcccatgt
gctcaaagctcttccccacttccttttctattagtaccagattatctggt
tttatgtggaggttctttatccacttggacttgatctatgtataaggaga
taagagtggatctatttgcattcttctacatgctgaccaccagttgagcc
agcaccatttgtcaaaaatgctatcccccccccccccactggatggtttt
acctctttgtcaagaatcaagtggccataggtgtgtgggttcatttctgg
gtattcaatct

gaattcctctgtaagttagagcactgggttatccaagttactgaggcaat
agcaatggtttcaattgcaagtgtgaggagcagggaggatggatgctggg
atacaggaaagggcaaggagggagaatttagtaaggaaagaacactgtca
atctccctctggcccaaatgggtgcaagatgagtcttaatacaaattgtt
tagactttttttccattcataaataggaagtgctaaatattactactaag
ctttcctttctacctccatggagtatcagggtaagatgggtgcctgtcag
tatgacagagacaagttagtggctcttcttttcttaaccatgatttaaca
caaattgtgttcacaaacacaggttggctgatagacaatgtttgtgctcc
cagtaatcttggtttaacaaacacatgaatcctgcagtggaagggaaaaa
ggacattcacggaacacttattatgttctagcaattcatgaggctttcta
tgtataatatctcactgaatttccttattctggaataaaatgcaccattt
gtcctatgagtgaatctcacctcaaagagtacaagatttctatcactact
gaatgaagagccaagccaaggtttgactgtagggcttttcattcaatatt
tgtactcatgaatggatttgtgtcagagacatttgttgtagtaacatgag
gcagaagcaagagaatcacaagtttatagttctatttggggtatagattg
tgcttctgccatggtgaaaaggttagtgcaactctgcgttaaacttataa
aaacctaaagacagttgggtgggtggggataactcagtggaagaatagtg
gcttagaaagtgtggactcaacttcaacctcacattattatagttattaa
atagatgaattcataaaagtattgtctacttatgtagccattgctataga
gatagttttgcagcagacttcctcatatgctggcctttatactgctttta
ctctttagtgatatgcacatatctatatgtagagcacaatatacatgcgt
tcactggggcaaagctccacattatctaatgaatcctgcaccactccatg
cccagctttatacttcctgaatgtctctaattcttaatgactagccttga
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_71247606_71247697
seq2: B6Ng01-227G05.b_151_666

seq1  --------------------------------------------------  0
                                                        
seq2  AAGTTACAGACTCTTTTCTTGGCCTTTATTTGTCAATATTTTAATATGTA  50

seq1  --------------------------------------------------  0
                                                        
seq2  AAATAACATAAACAGGAGTGTAAACAGGAGTGGTATAGCTGGGTCCTCAG  100

seq1  --------------------------------------------------  0
                                                        
seq2  GTAGTACTATATCCAATTTTCTGAGGAACCTCCAGATTGATTTCCAGAGT  150

seq1  --------------------------------------------------  0
                                                        
seq2  GGTTGTACCAGCTTGCAATCCCACCAGCAATACAGGAGTGTTTCTCTTTC  200

seq1  --------------------------------------------------  0
                                                        
seq2  TCCACATCCTCATCAGCATCTTCTGTCACCTGAATTTCTGATCTTAGCCA  250

seq1  --------------------------------------------------  0
                                                        
seq2  TTCTGACTGGTATGATTTGGAATCTCAGGGTTGTTTTAAGCTGCATTTCC  300

seq1  --------------------------------------------------  0
                                                        
seq2  CTGATGACTAAGGATGTTGAACATTTCTTTAGGTGCTTCTCAGCCCTTCA  350

seq1  --------------------------------------------------  0
                                                        
seq2  GTATCCCTCAGTTGAGAATTCTTTGTTTACCTTTGTACCCCATTTTTCAA  400

seq1  --------------AAGTTACAGACT--CTTTTTG---TTGTTGT-TGTT  30
                      |||  || ||   ||||||   |  |||| | | 
seq2  TAGGGTTATTTGGTTCGTTGGAGTCTAATTTTTTGAATTCTTTGTATATA  450

seq1  GTTGCTGTTAA----AGATGA-AAGCAGGGTTGGTAAAGATCATTTCCCA  75
       | | ||||||      || | | | ||||||||||| |||| |||||||
seq2  ATGGATGTTAACTCTCTATCAGATGTAGGGTTGGTAAGGATCTTTTCCCA  500

seq1  ATCTGTTGGTTGCCATT  92
      ||||| |||||||||||
seq2  ATCTG-TGGTTGCCATT  516


seq1: chr8_104175035_104176197
seq2: B6Ng01-227G05.g_68_1218

seq1  GAATTCCTCTGTAAGTTAGAGCACTGGGTTATCCAAGTTACTGAGGCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTGTAAGTTAGAGCACTGGGTTATCCAAGTTACTGAGGCAAT  50

seq1  AGCAATGGTTTCAATTGCAAGTGTGAGGAGCAGGGAGGATGGATGCTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGGTTTCAATTGCAAGTGTGAGGAGCAGGGAGGATGGATGCTGGG  100

seq1  ATACAGGAAAGGGCAAGGAGGGAGAATTTAGTAAGGAAAGAACACTGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGAAAGGGCAAGGAGGGAGAATTTAGTAAGGAAAGAACACTGTCA  150

seq1  ATCTCCCTCTGGCCCAAATGGGTGCAAGATGAGTCTTAATACAAATTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCTCTGGCCCAAATGGGTGCAAGATGAGTCTTAATACAAATTGTT  200

seq1  TAGACTTTTTTTCCATTCATAAATAGGAAGTGCTAAATATTACTACTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTTTTTTTCCATTCATAAATAGGAAGTGCTAAATATTACTACTAAG  250

seq1  CTTTCCTTTCTACCTCCATGGAGTATCAGGGTAAGATGGGTGCCTGTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTTCTACCTCCATGGAGTATCAGGGTAAGATGGGTGCCTGTCAG  300

seq1  TATGACAGAGACAAGTTAGTGGCTCTTCTTTTCTTAACCATGATTTAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACAGAGACAAGTTAGTGGCTCTTCTTTTCTTAACCATGATTTAACA  350

seq1  CAAATTGTGTTCACAAACACAGGTTGGCTGATAGACAATGTTTGTGCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGTGTTCACAAACACAGGTTGGCTGATAGACAATGTTTGTGCTCC  400

seq1  CAGTAATCTTGGTTTAACAAACACATGAATCCTGCAGTGGAAGGGAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATCTTGGTTTAACAAACACATGAATCCTGCAGTGGAAGGGAAAAA  450

seq1  GGACATTCACGGAACACTTATTATGTTCTAGCAATTCATGAGGCTTTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTCACGGAACACTTATTATGTTCTAGCAATTCATGAGGCTTTCTA  500

seq1  TGTATAATATCTCACTGAATTTCCTTATTCTGGAATAAAATGCACCATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAATATCTCACTGAATTTCCTTATTCTGGAATAAAATGCACCATTT  550

seq1  GTCCTATGAGTGAATCTCACCTCAAAGAGTACAAGATTTCTATCACTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTATGAGTGAATCTCACCTCAAAGAGTACAAGATTTCTATCACTACT  600

seq1  GAATGAAGAGCCAAGCCAAGGTTTGACTGTAGGGCTTTTCATTCAATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAAGAGCCAAGCCAAGGTTTGACTGTAGGGCTTTTCATTCAATATT  650

seq1  TGTACTCATGAATGGATTTGTGTCAGAGACATTTGTTGTAGTAACATGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCATGAATGGATTTGTGTCAGAGACATTTGTTGTAGTAACATGAG  700

seq1  GCAGAAGCAAGAGAATCACAAGTTTATAGTTCTATTTGGGGTATAGATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGCAAGAGAATCACAAGTTTATAGTTCTATTTGGGGTATAGATTG  750

seq1  TGCTTCTGCCATGGTGAAAAGGTTAGTGCAACTCTGCGTTAAACTTATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTGCCATGGTGAAAAGGTTAGTGCAACTCTGCGTTAAACTTATAA  800

seq1  AAACCTAAAGACAGTTGGGTGGGTGGGGATAACTCAGTGGAAGAATAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTAAAGACAGTTGGGTGGGTGGGGATAACTCAGTGGAAGAATAGTG  850

seq1  GCTTAGAAAGTGTGGACTCAACTTCAACCTCACATTATTATAGTTATTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGAAAGTGTGGACTCAACTTCAACCTCACATTATTATAGTTATTAA  900

seq1  ATAGATGAATTCATAAAAGTATTGTCTACTTATGTAGCCATTGCTATAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATAGATGAATTCATAAAAGTATTGTCTACTTATGTAGCCATTGCTAT-AG  949

seq1  AGATAGTTTTGCAGCAGACTTCCTCATATGCTGGCCTTTATACTGCTTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGTTTTGCAGCAGACTTCCTCATATGCTGGCCTTTATACTGCTTTT  999

seq1  ACCTCTTTAGTGATATTGCACATATCTTATATGTAGAAGCCACAATATAC  1050
      | ||||||||||||| |||||||||| ||||||||||   ||||||||||
seq2  A-CTCTTTAGTGATA-TGCACATATC-TATATGTAGA--GCACAATATAC  1044

seq1  ATGCGTCCACTGGGGCAAAGCTCCACATTATCTATTGATCTCTGCACCAC  1100
      |||||| ||||||||||||||||||||||||||| |||   |||||||||
seq2  ATGCGTTCACTGGGGCAAAGCTCCACATTATCTAATGAATCCTGCACCAC  1094

seq1  TCCATGCCCAGTTTTATACTTCTCTGATGGTCTCTATTTTCTTTAATGAG  1150
      ||||||||||| |||||||||| ||||  ||||||| ||   ||||||| 
seq2  TCCATGCCCAGCTTTATACTTC-CTGAATGTCTCTAATT--CTTAATGAC  1141

seq1  TAGCCCCTTTGAT  1163
      |||||   |||||
seq2  TAGCC---TTGAT  1151


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