BAC Information

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BAC

Clone NameB6Ng01-228F15
Chromosome4 (Build37)
Map Location 5,138,350 - 5,138,764
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039297, LOC622019, Impad1, LOC100039338
Downstream gene1700012H17Rik, LOC669309, 3110003A22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228F15.bB6Ng01-228F15.g
ACCGA041785GA041786
length1,0341,021
definitionB6Ng01-228F15.b B6Ng01-228F15.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcttcatgtggctatcttctttaggtttgttaaaagattagttt
cttcctttttctcaagcttagtttccctcttttgtatttgagttttccct
ttattatcctttgaagggctgggtttgtggaaagatattgtgtaaatttg
gttttcttatggaataccttggtttgtccatctatggcaattgggaactt
ttctgtgcttgtagcttgggctggcatttgttttctcttaaggtttgtat
aacatctgtccatggtcttctggctttcatattctctggtgaggagtctg
gtgtaattctaataggtctgcctttatatattacttgaccttttcccctt
actgcttttaatattttttattttttgtgcatttggtattttcattatta
tgtgcggggaggaatttcttttctggtccaaactatttggagttatgtaa
gcttcttgtatgttcatgggcatctctttctttaggttagggaagttttc
ttctataattttgttgaagatatttactggccctttaagttcgaaatctt
cattctcatctatacctattaatctaaggtttggtcttctcattgtatcc
tggatttcttgggtattttgagttaggatctttctctttttctttttttt
tttttttcttttctttgatagttgtgtctatgtttcgtatggtggtgctt
gcatctatgactccttctctctttcctaggttttctttctccagtgttgt
ctccctttgtgatttctttattgtttctacttccatttttagatcctgga
tggttttgttcaattcttttctcctgtttggatgcgctttccttgtactt
tcttttaagggagttatttattttccttcttatatccctccatcatctca
tgagaagtgacttttagatccatatcttgctttttctggtgtgatggtgt
atcccaggacttcttatggtgggagagttggatttctgatgaatccaatt
tactattggtttccgttgtttctgttccttgcac

gaattctttgtttaactctgtaccccattttttaatagggttatttgatt
ttctggagtccagcttcttgagttctttttatatattggctattattccc
ccattagatttaggattggtaaagatcctttcccaatctgttggtggcct
ttttgtcctgacagtgtcttttgccttacagaagctttgcaattttatga
ggtcccatttgttgattctcagtcttacagtacaagccattgttttacag
ttcagcatttttcccctgtgcccatatcttggaagcttttcctcactttc
tcctctttaagtttcagtgtctgtggtattatgtgtgtaggcagccgacg
cctaaaagatggcgctgggtatcaggacaccatggccataaacaacctta
ctgcacctgtgctagtcaccacttggcgccaaccactccccagtgggtgc
atgctaatgaagtgtcgacaggccgaccaatcccaggaggacacatagct
ctccccagtcctggggtgtatataagcagtcctccctgggttcctgaagt
ccccgtagcagtattgaggagttcctgcaataaggctgttgagaagaatc
catccgtgttgtgtcttccttgccagaagaggtgggcacgacaaattagt
ggcccgtatggggacccaaggatttcgtggattcagaacgttttagctga
agaacagctgtaccagtaagtctcccaaattgatccctgggtttaagggg
gatatgtttttctcgcccatagacccagtgtgggtagctcttgccattat
tgttttatttttttgtaaaacacagcatggtacgagctttgtttagaagc
taaacggtatgtcaagggaagcggtaaaagcaggtcaaaaaatttcttac
agaacaagaagttatgtcagagggaaaataatgcatggatgagcagaaaa
aatgaaaaggagcgaatgggtgagaaagaaaaaggaaagaaagggaggaa
aataaaagctactcagtgata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_5138350_5138764
seq2: B6Ng01-228F15.g_583_1089

seq1  GGTGTATATAAGCAGCACCTTTTTGGG-GCTCGGGGTCTTCCT--CTTCA  47
      |||||||||||||||  |||   ||||  |  |  |||  | |  |   |
seq2  GGTGTATATAAGCAG-TCCTCCCTGGGTTCCTGAAGTCCCCGTAGCAGTA  49

seq1  TGCTGAAGCTAGCGTAATAAAGCATTGTTGCAGAAGGATCCAGTTGTCCG  97
      |   | || |   | ||||| ||  ||||| ||||| |||||    ||||
seq2  TTGAGGAGTTCCTGCAATAAGGC--TGTTG-AGAAGAATCCA----TCCG  92

seq1  CGTGTGT-TCTTGCTGGCGAGACGATAGCGGACGCTCACAAA-TGGTG--  143
       || ||| |||| || || ||| ||  | || | |  ||||| | |||  
seq2  TGT-TGTGTCTTCCTTGCCAGAAGA-GGTGGGCAC-GACAAATTAGTGGC  139

seq1  CTGAAACCCGGGAAAAGAAACAT-------CTTCAGGCACG----AGC-G  181
      | | |    ||| |   ||  ||        |||| | |||    ||| |
seq2  CCGTA---TGGGGACCCAAGGATTTCGTGGATTCA-GAACGTTTTAGCTG  185

seq1  AAGACCCCCTACTACAGGGAGGATTCAGAACTGCATTGCGGGG---AAGG  228
      |||| |  ||  |||  | | |  ||  || |  ||  | |||   ||||
seq2  AAGAACAGCT-GTACCAGTAAGTCTCCCAAATTGATCCCTGGGTTTAAGG  234

seq1  ----AATGGTT--------AATAAA------GTG--------TTCCC---  249
           ||| ||         ||| |      |||        || ||   
seq2  GGGATATGTTTTTCTCGCCCATAGACCCAGTGTGGGTAGCTCTTGCCATT  284

seq1  ----------------GTAAAACAGACTGCTGAGAAGGATCCGACTGTGT  283
                      |||||||  || ||   | | || |    ||| |
seq2  ATTGTTTTATTTTTTTGTAAAAC--ACAGCATGGTACGAGC--TTTGTTT  330

seq1  GGATTCAGAACTCT---TCAGCTGAGG-----AACGGTGGT---------  316
       ||  |  |||  |   |||   || |     || |  |||         
seq2  AGAAGCTAAACGGTATGTCAAGGGAAGCGGTAAAAGCAGGTCAAAAAATT  380

seq1  --------AAC-----GGTAAGTC--TCCCAAATTGATCCCCGGGT----  347
              |||     | || |||      ||| | || |  || |    
seq2  TCTTACAGAACAAGAAGTTATGTCAGAGGGAAAATAATGCATGGATGAGC  430

seq1  ----------TAAAGGGGGATATGTTTTTG-AAGAAAAAGGAAAAGAAAA  386
                 ||||| |   |||  |  | |||||||||||||   |||
seq2  AGAAAAAATGAAAAGGAGCGAATGGGTGAGAAAGAAAAAGGAAA--GAAA  478

seq1  GGGAGGAAGAATAAAAG-GAATCAGTGATA  415
      |||||||| ||||||||  | |||||||||
seq2  GGGAGGAA-AATAAAAGCTACTCAGTGATA  507


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