BAC Information

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BAC

Clone NameB6Ng01-230C13
Chromosome4 (Build37)
Map Location 67,901,117 - 67,999,263
singlet/doubletdoublet
Overlap geneTcp1-ps1
Upstream geneLOC100039379, Hmgb1-rs18, LOC433715
Downstream geneDbc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230C13.bB6Ng01-230C13.g
ACCGA043095GA043096
length1,179712
definitionB6Ng01-230C13.b B6Ng01-230C13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,901,117 - 67,902,324)(67,998,552 - 67,999,263)
sequence
gaattcagattcaactcttgatctcagaaaaaggaaaataattccaaagc
acagcatggaagaggaactttttttttccttgagattttaaaaagaggag
taaataattcttagacatatcaggaagacagggtcaaccattcaggcttc
catgatctacttgcttcttctgcctaaaagtaaggagtttctcagcaacc
agggcagaatagaagcaaatcacagcagtctagcaaggtctactcacagg
agggtgaactgagtccttctgactaggatctagtgaaacactggtttcct
caacaagagtgttctgagaacaacttaagaaaaataaaggaaaacccagg
taatttccatatatgacaggaaacttctgtcattctttcaatgcttgtat
ttactagtacttgtgttaatttgattagaagaattcttaaagttaaaaat
ggatctgaaaacatatgcctttgtttgaagatattatattaaacacactt
tctttccataggctatttggaaagggccacaatctttcaaatcttcatct
tttgtcttagtgttttcttagtagttgtccagtattttccagatctttaa
tgggatgctgaatctaacatgggaaacttgcctgttgcctagctttgttt
aagcagaaaagacagtgctgttggtatgagttctgtgctcacaaatccaa
agtgtataataaatgaggggctttgtgcagaattatacctgcaacatgac
tacatagtgactatcttaagacagtgactgagagttgcagaactaaatct
aaccatccatttttgtgatgttgtaatgtgtcaatatttcttagtctgag
tttaagaagactatgtgatataactcccataaatagggagcaaccatgct
tccatttttagaatgtaacatggcctaagttaacttaataaggaaagctg
agtttgacatttaagtttcttttttatagccaaagttgaatccatacaac
taaaatgtgggttattttcctacaaaatttctgatcactgtatgatatat
tgcactagggtatctagatatcacgcacatactcatcatgttctctcaag
agtttctagtaaggttagttgtgtagcgaatgtaccagatgatgatctct
tttcagacctagttgaaaggaatgaaagc

gaattcagtgcgtcatttaaaatacaaaataaagtgccgggcgtgatggt
gcacgcctttaatcccagcacttgggagtcaggtggatttctgagtttga
ggccaatctggtctacaaagtgagttccaggatagccagggctatagaga
aaccctgtctcgaaaaaaaaaaaaaaaagaaagaaagaaagaaagaaaga
aagaaagaaagaaagaaagaaagaaagaagatgtaaaattcggaagatat
atgtaaaatggctaatgggggacctagagaggaaaagtagaattgtatga
ataatattcttaaataataaataaaacatgtcatttgaaaaactgaaatg
aaaaggaaagaaaatcattcctaggcacaagaggactcagaaagagcaca
gtgccgttaaaggatccaggaaatattgcatcatgattctttgcatagaa
ggagatatcttcttcaaaatataagtaggattagagcttttctgagatgg
aatagaaacactatgctgaccaaccaaagctcccaggaactaaaccacca
accaaagaatatacacagttggacctatggctccagctgcatatgtcgca
gaggatgaccttatctggaatcaataggaggggaggccgttggtattgtg
gaagcttgatgacctagcatagaagaatgctagggcactgaggtgggagg
ggatgggtgagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_67901117_67902324
seq2: B6Ng01-230C13.b_51_1229

seq1  GAATTCAGATTCAACTCTTGATCTCAGAAAAAGGAAAATAATTCCAAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATTCAACTCTTGATCTCAGAAAAAGGAAAATAATTCCAAAGC  50

seq1  ACAGCATGGAAGAGGAACTTTTTTTTTCCTTGAGATTTTAAAAAGAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATGGAAGAGGAACTTTTTTTTTCCTTGAGATTTTAAAAAGAGGAG  100

seq1  TAAATAATTCTTAGACATATCAGGAAGACAGGGTCAACCATTCAGGCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATTCTTAGACATATCAGGAAGACAGGGTCAACCATTCAGGCTTC  150

seq1  CATGATCTACTTGCTTCTTCTGCCTAAAAGTAAGGAGTTTCTCAGCAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATCTACTTGCTTCTTCTGCCTAAAAGTAAGGAGTTTCTCAGCAACC  200

seq1  AGGGCAGAATAGAAGCAAATCACAGCAGTCTAGCAAGGTCTACTCACAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGAATAGAAGCAAATCACAGCAGTCTAGCAAGGTCTACTCACAGG  250

seq1  AGGGTGAACTGAGTCCTTCTGACTAGGATCTAGTGAAACACTGGTTTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGAACTGAGTCCTTCTGACTAGGATCTAGTGAAACACTGGTTTCCT  300

seq1  CAACAAGAGTGTTCTGAGAACAACTTAAGAAAAATAAAGGAAAACCCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGAGTGTTCTGAGAACAACTTAAGAAAAATAAAGGAAAACCCAGG  350

seq1  TAATTTCCATATATGACAGGAAACTTCTGTCATTCTTTCAATGCTTGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCCATATATGACAGGAAACTTCTGTCATTCTTTCAATGCTTGTAT  400

seq1  TTACTAGTACTTGTGTTAATTTGATTAGAAGAATTCTTAAAGTTAAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAGTACTTGTGTTAATTTGATTAGAAGAATTCTTAAAGTTAAAAAT  450

seq1  GGATCTGAAAACATATGCCTTTGTTTGAAGATATTATATTAAACACACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTGAAAACATATGCCTTTGTTTGAAGATATTATATTAAACACACTT  500

seq1  TCTTTCCATAGGCTATTTGGAAAGGGCCACAATCTTTCAAATCTTCATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCATAGGCTATTTGGAAAGGGCCACAATCTTTCAAATCTTCATCT  550

seq1  TTTGTCTTAGTGTTTTCTTAGTAGTTGTCCAGTATTTTCCAGATCTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTAGTGTTTTCTTAGTAGTTGTCCAGTATTTTCCAGATCTTTAA  600

seq1  TGGGATGCTGAATCTAACATGGGAAACTTGCCTGTTGCCTAGCTTTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGCTGAATCTAACATGGGAAACTTGCCTGTTGCCTAGCTTTGTTT  650

seq1  AAGCAGAAAAGACAGTGCTGTTGGTATGAGTTCTGTGCTCACAAATCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAAAAGACAGTGCTGTTGGTATGAGTTCTGTGCTCACAAATCCAA  700

seq1  AGTGTATAATAAATGAGGGGCTTTGTGCAGAATTATACCTGCAACATGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTATAATAAATGAGGGGCTTTGTGCAGAATTATACCTGCAACATGAC  750

seq1  TACATAGTGACTATCTTAAGACAGTGACTGAGAGTTGCAGGAACTAAATC  800
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TACATAGTGACTATCTTAAGACAGTGACTGAGAGTTGCA-GAACTAAATC  799

seq1  TAACCATCCATTTTTGTGATGTTGTAATGTGTCAATATTTCTTAGTCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCATCCATTTTTGTGATGTTGTAATGTGTCAATATTTCTTAGTCTGA  849

seq1  GTTTAAGAAGACTATGTGATATAACTCCCATAAATAGGGAGCAACCATGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAGAAGACTATGTGATATAACTCCCATAAATAGGGAGCAACCATGC  899

seq1  TTCCATTTTTAGAATGTAACATGGCCTAAGTTAACTTAAATAAGAAAGCT  950
      |||||||||||||||||||||||||||||||||||||||  | |||||||
seq2  TTCCATTTTTAGAATGTAACATGGCCTAAGTTAACTTAATAAGGAAAGCT  949

seq1  GAGTTTGACAATTAAGTTTC-TTTTTATAGCCAAAAGTTGAAATCCATAC  999
      |||||||||| ||||||||| ||||||||||| ||||||| |||||||||
seq2  GAGTTTGACATTTAAGTTTCTTTTTTATAGCC-AAAGTTG-AATCCATAC  997

seq1  AAACTAAAAATGTGGGGTTATTTTCCTACCAAAAATTTTCTGGATCACTG  1049
       |||| ||||||| |||||||||||||||   ||| ||||| ||||||||
seq2  -AACT-AAAATGT-GGGTTATTTTCCTAC---AAAATTTCT-GATCACTG  1040

seq1  TAATGGTTAATAT-TTGCAACTAGGGGTAATCTAGAATATCACGCAACAT  1098
      ||     | |||| |||| |||||||   |||||| ||||||||| ||||
seq2  TA-----TGATATATTGC-ACTAGGG--TATCTAG-ATATCACGC-ACAT  1080

seq1  ACCTTCATCCATG-TCTCTCAGGGAGTTTCTAAATTAGGTTAGTTGTGGT  1147
      ||  |||| |||| |||||||  |||||||| | | ||||||||||||  
seq2  AC--TCAT-CATGTTCTCTCA-AGAGTTTCT-AGTAAGGTTAGTTGTG--  1123

seq1  AAGCAGATGTACCCAAAGTATGGATGGATCTCTTTTCAGAGCTAGTAGAA  1197
       |||  |||||||   || || ||| |||||||||||||| ||||| |||
seq2  TAGCGAATGTACC---AG-AT-GAT-GATCTCTTTTCAGACCTAGTTGAA  1167

seq1  A-GAAGGAAAGC  1208
      | ||| ||||||
seq2  AGGAATGAAAGC  1179


seq1: chr4_67998552_67999263
seq2: B6Ng01-230C13.g_64_775 (reverse)

seq1  CCTCACCCATCCCCTCCCACCTCAGTGCCCTAGCATTCTTCTATGCTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACCCATCCCCTCCCACCTCAGTGCCCTAGCATTCTTCTATGCTAGG  50

seq1  TCATCAAGCTTCCACAATACCAACGGCCTCCCCTCCTATTGATTCCAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAAGCTTCCACAATACCAACGGCCTCCCCTCCTATTGATTCCAGAT  100

seq1  AAGGTCATCCTCTGCGACATATGCAGCTGGAGCCATAGGTCCAACTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCATCCTCTGCGACATATGCAGCTGGAGCCATAGGTCCAACTGTGT  150

seq1  ATATTCTTTGGTTGGTGGTTTAGTTCCTGGGAGCTTTGGTTGGTCAGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTTTGGTTGGTGGTTTAGTTCCTGGGAGCTTTGGTTGGTCAGCAT  200

seq1  AGTGTTTCTATTCCATCTCAGAAAAGCTCTAATCCTACTTATATTTTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTCTATTCCATCTCAGAAAAGCTCTAATCCTACTTATATTTTGAA  250

seq1  GAAGATATCTCCTTCTATGCAAAGAATCATGATGCAATATTTCCTGGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATATCTCCTTCTATGCAAAGAATCATGATGCAATATTTCCTGGATC  300

seq1  CTTTAACGGCACTGTGCTCTTTCTGAGTCCTCTTGTGCCTAGGAATGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACGGCACTGTGCTCTTTCTGAGTCCTCTTGTGCCTAGGAATGATT  350

seq1  TTCTTTCCTTTTCATTTCAGTTTTTCAAATGACATGTTTTATTTATTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCCTTTTCATTTCAGTTTTTCAAATGACATGTTTTATTTATTATT  400

seq1  TAAGAATATTATTCATACAATTCTACTTTTCCTCTCTAGGTCCCCCATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATATTATTCATACAATTCTACTTTTCCTCTCTAGGTCCCCCATTA  450

seq1  GCCATTTTACATATATCTTCCGAATTTTACATCTTCTTTCTTTCTTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTTACATATATCTTCCGAATTTTACATCTTCTTTCTTTCTTTCTT  500

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTT  550

seq1  CGAGACAGGGTTTCTCTATAGCCCTGGCTATCCTGGAACTCACTTTGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACAGGGTTTCTCTATAGCCCTGGCTATCCTGGAACTCACTTTGTAG  600

seq1  ACCAGATTGGCCTCAAACTCAGAAATCCACCTGACTCCCAAGTGCTGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGATTGGCCTCAAACTCAGAAATCCACCTGACTCCCAAGTGCTGGGA  650

seq1  TTAAAGGCGTGCACCATCACGCCCGGCACTTTATTTTGTATTTTAAATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGCGTGCACCATCACGCCCGGCACTTTATTTTGTATTTTAAATGA  700

seq1  CGCACTGAATTC  712
      ||||||||||||
seq2  CGCACTGAATTC  712


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