BAC Information

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BAC

Clone NameB6Ng01-231B08
Chromosome4 (Build37)
Map Location 133,035,848 - 133,229,839
singlet/doubletdoublet
Overlap gene4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv
Upstream geneSesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1
Downstream geneArid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231B08.bB6Ng01-231B08.g
ACCGA043779GA043780
length671850
definitionB6Ng01-231B08.b B6Ng01-231B08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,229,167 - 133,229,839)(133,035,848 - 133,036,693)
sequence
gaattcacgaagcaaggatggtttctttaaggtcagggtgctgcgaagac
tgtaagaaagtcaagtcacaacctcgggccctagtcacaagtgtgcctag
agaggcactgacatttcactcacaggactggcaacaaatgctttcggggg
gcgggggggggaggaaaaatgactttggaaactcctgttttctctttacc
agtcattaaattatacattatccaccttacacgcaaacatccaaggggca
gttgacatcccagggcctgagatgatagacagacacagcttctggccccc
accgaactgatgaaggctagttttttttgttttttttgtttttttttttt
gcttggagagatagagacccatctctttgttcccacccacatttgtggct
gttgcagaagataaacccctccctcagccagggctgtgtccagaggttaa
cctagacccaagctacgtttgagaggacagataactgaaaccacacaagg
ctttggaatcctgataaacgagaaatctaccaacggagaaggatttacta
tctgtttcctctaagcgggtgcaaagttgttctaacagtttccgttaatt
acaggggtaccaactggccgctcctcccaacaagcggttttgttcaatta
gcttccttttttttttttttt
gtccgagagagggggcggggaaggggcgtgcctttcagccaatcagaaac
tcctgagagccagcgattcccttgcaaaactgtgttggcccgtgataggg
ggagggacaagaggagggcatctcctgctgtgtgacagctgtgctgacca
atgggcgtgcggcccgcggcctataagtgtcagctgggcccgagccgcct
ggctctaagatctgttagtcctccctgccgtcgggggtgttccctgggtt
tgcctcgccgccgccgggtccccgcaccccgccttggcccgtgcacagcc
actctccctgccctcctcgccttcaccattcccgggtttctgccgtccag
gcaccggggccgggtgaatgatgccgtcggagagtggagctgagagcctg
gagcagccagctgcgcaggtggggaccggtgcagcctcggcagtggccac
ggctggggcggccggcggcggcccggacccggaggcctcctcggcctccc
tgggacggcaccagagtcggctgagctggccacaggtgaagcggctggac
gcgctgctgaaagagccgatccccattcacggacgaggcaacttccccac
gctgagcgtgcagccccagcagatcgtgcaggtgagggggaccctggcag
ggtcgggggtggggtggtgctctgctgcaaggtacctggagtctatgact
ggccgggaagttagtggaaactaagaaccaggaacccgactactagttca
ctcttcctgcactctgctgagcttgcctgcttgccgttctgggggaccct
ctattcccttgggaaccactcacccagtaccctggtctgggaaatggggc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_133229167_133229839
seq2: B6Ng01-231B08.b_44_714 (reverse)

seq1  AAAAAAAAAAAAAAAGGAAGCTAATTGAACAAAACCGCCTGTTGGGGAGG  50
      |||||||||||||||||||||||||||||||||||||| |||| ||||||
seq2  AAAAAAAAAAAAAAAGGAAGCTAATTGAACAAAACCGCTTGTT-GGGAGG  49

seq1  AGCGGCCAGTTGGTACCCCTGTAACTAACGGAAACTGTTAGAACAACTTT  100
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGCGGCCAGTTGGTACCCCTGTAATTAACGGAAACTGTTAGAACAACTTT  99

seq1  GCACCCGCCTTAGAGGAAACAGATAGTAAATCCTTCTCCGTTGGTAGATT  150
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCG-CTTAGAGGAAACAGATAGTAAATCCTTCTCCGTTGGTAGATT  148

seq1  TCTCGTTTCTCAGGATTCCAAAGCCTTGTGTGGTTTCAGTTATCTGTCCT  200
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGTTTATCAGGATTCCAAAGCCTTGTGTGGTTTCAGTTATCTGTCCT  198

seq1  CTCAAACGTAGCTTGGGTCTAGGTTAACCTCTGGCCACAGCCCTGGCTGA  250
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTCAAACGTAGCTTGGGTCTAGGTTAACCTCTGGACACAGCCCTGGCTGA  248

seq1  GGGAGGGGTTTATCTTCTGCAACAGCCACAAATGTGGGTGGGAACAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGGTTTATCTTCTGCAACAGCCACAAATGTGGGTGGGAACAAAGA  298

seq1  GATGGGTCTCTATCTCTCCAAGCAAAAAAAAAAAACAAAAAAAACAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGTCTCTATCTCTCCAAGCAAAAAAAAAAAACAAAAAAAACAAAAA  348

seq1  AAACTAGCCTTCATCAGTTCGGTGGGGGCCAGAAGCTGTGTCTGTCTATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGCCTTCATCAGTTCGGTGGGGGCCAGAAGCTGTGTCTGTCTATC  398

seq1  ATCTCAGGCCCTGGGATGTCAACTGCCCCTTGGATGTTTGCGTGTAAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGGCCCTGGGATGTCAACTGCCCCTTGGATGTTTGCGTGTAAGGT  448

seq1  GGATAATGTATAATTTAATGACTGGTAAAGAGAAAACAGGAGTTTCCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAATGTATAATTTAATGACTGGTAAAGAGAAAACAGGAGTTTCCAAA  498

seq1  GTCATTTTTCCTCCCCCCCCCGCCCCCCGAAAGCATTTGTTGCCAGTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTTTCCTCCCCCCCCCGCCCCCCGAAAGCATTTGTTGCCAGTCCT  548

seq1  GTGAGTGAAATGTCAGTGCCTCTCTAGGCACACTTGTGACTAGGGCCCGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGAAATGTCAGTGCCTCTCTAGGCACACTTGTGACTAGGGCCCGA  598

seq1  GGTTGTGACTTGACTTTCTTACAGTCTTCGCAGCACCCTGACCTTAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGACTTGACTTTCTTACAGTCTTCGCAGCACCCTGACCTTAAAGA  648

seq1  AACCATCCTTGCTTCGTGAATTC  673
      |||||||||||||||||||||||
seq2  AACCATCCTTGCTTCGTGAATTC  671

seq1: chr4_133035848_133036693
seq2: B6Ng01-231B08.g_75_923

seq1  GTCCGAGAGAGGGGGCGGGGAAGGGGCGTGCCTTTCAGCCAATCAGAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGAGAGAGGGGGCGGGGAAGGGGCGTGCCTTTCAGCCAATCAGAAAC  50

seq1  TCCTGAGAGCCAGCGATTCCCTTGCAAAACTGTGTTGGCCCGTGATAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGAGCCAGCGATTCCCTTGCAAAACTGTGTTGGCCCGTGATAGGG  100

seq1  GGAGGGACAAGAGGAGGGCATCTCCTGCTGTGTGACAGCTGTGCTGACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGACAAGAGGAGGGCATCTCCTGCTGTGTGACAGCTGTGCTGACCA  150

seq1  ATGGGCGTGCGGCCCGCGGCCTATAAGTGTCAGCTGGGCCCGAGCCGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCGTGCGGCCCGCGGCCTATAAGTGTCAGCTGGGCCCGAGCCGCCT  200

seq1  GGCTCTAAGATCTGTTAGTCCTCCCTGCCGTCGGGGGTGTTCCCTGGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTAAGATCTGTTAGTCCTCCCTGCCGTCGGGGGTGTTCCCTGGGTT  250

seq1  TGCCTCGCCGCCGCCGGGTCCCCGCACCCCGCCTTGGCCCGTGCACAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCGCCGCCGCCGGGTCCCCGCACCCCGCCTTGGCCCGTGCACAGCC  300

seq1  ACTCTCCCTGCCCTCCTCGCCTTCACCATTCCCGGGTTTCTGCCGTCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCCCTGCCCTCCTCGCCTTCACCATTCCCGGGTTTCTGCCGTCCAG  350

seq1  GCACCGGGGCCGGGTGAATGATGCCGTCGGAGAGTGGAGCTGAGAGCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCGGGGCCGGGTGAATGATGCCGTCGGAGAGTGGAGCTGAGAGCCTG  400

seq1  GAGCAGCCAGCTGCGCAGGTGGGGACCGGTGCAGCCTCGGCAGTGGCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCCAGCTGCGCAGGTGGGGACCGGTGCAGCCTCGGCAGTGGCCAC  450

seq1  GGCTGGGGCGGCCGGCGGCGGCCCGGACCCGGAGGCCTCCTCGGCCTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGGCGGCCGGCGGCGGCCCGGACCCGGAGGCCTCCTCGGCCTCCC  500

seq1  TGGGACGGCACCAGAGTCGGCTGAGCTGGCCACAGGTGAAGCGGCTGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACGGCACCAGAGTCGGCTGAGCTGGCCACAGGTGAAGCGGCTGGAC  550

seq1  GCGCTGCTGAAAGAGCCGATCCCCATTCACGGACGAGGCAACTTCCCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTGCTGAAAGAGCCGATCCCCATTCACGGACGAGGCAACTTCCCCAC  600

seq1  GCTGAGCGTGCAGCCCCAGCAGATCGTGCAGGTGAGGGGGACCCTGGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCGTGCAGCCCCAGCAGATCGTGCAGGTGAGGGGGACCCTGGCAG  650

seq1  GGTCGGGGGTGGGGTGGTGCTCTGCTGCAAGGTACCTGGAGTCTATGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGGGGGTGGGGTGGTGCTCTGCTGCAAGGTACCTGGAGTCTATGACT  700

seq1  GGCCGGGAAGCTAG-GGAAACTAAGAAACAGGAACCCGACTACTAGTTCA  749
      |||||||||| ||| |||||||||||| ||||||||||||||||||||||
seq2  GGCCGGGAAGTTAGTGGAAACTAAGAACCAGGAACCCGACTACTAGTTCA  750

seq1  GCTCTTCCTGCACCCTGCTGAGCTTGCCTGCTTGCCGTTCT-GGGGACCT  798
       |||||||||||| ||||||||||||||||||||||||||| ||||||| 
seq2  -CTCTTCCTGCACTCTGCTGAGCTTGCCTGCTTGCCGTTCTGGGGGACCC  799

seq1  CTTATTCCCTTGGGAACCACTCACCAAG-ACCCTGG-CTGGGAAATGGGG  846
        ||||||||||||||||||||||| || ||||||| |||||||||||||
seq2  TCTATTCCCTTGGGAACCACTCACCCAGTACCCTGGTCTGGGAAATGGGG  849