BAC Information

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BAC

Clone NameB6Ng01-233N18
Chromosome4 (Build37)
Map Location 38,940,740 - 38,941,840
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039448, LOC665520, LOC100039487
Downstream gene1700009N14Rik, LOC435775, LOC329824, LOC621880
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233N18.bB6Ng01-233N18.g
ACCGA045794GA045795
length1,1771,100
definitionB6Ng01-233N18.b B6Ng01-233N18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaatacagaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccatctcacatcagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaaaactcctccattattggtg
ggatggtaagctggtacaaccactctggaaatcagtctggtgatttctca
aaaaattggacatggtactaccggaggatcccgcaatacctctcctgggc
atatattcagaagatgttccaactagtaagaaagaaacatgctccattat
gttcatagtagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacaaaaattgtggtatatttacacaatg
gagtactactcagctattaaaaggaatgaatttatgaaattcctaggcaa
atggttggacatggagggcattatcctgagtgaggtaacccaatcacaaa
agaactcaaatgatatgtactcactgataagtggatattagttcagaaac
ttagaatacccaagatgtaagttacaatttgcaaaacacatgaaactcaa
gaagaacaaagaccaaagtgtggacactttgccccttcttagaattggga
acaaaacacccatggaagaagttacagaaacaaagtttggaactgagaca
aaaggatggaccatctagagactgccatatccagggatccatcccataat
cagcctccaaatgctgacaccaatgcatacactagcaagattttgctgaa
aggaccctgattatagctgtctcttgtgagacttatgccggggcctagca
aaccacataagtggatacttacagtcagctatggatggatcacagagccc
caattggaggagctaaagaaaataccaggagctaaagggatctgcaccct
tattaggtggacacattatggactacattaccccgggagctcttgacttc
tagctgcatatgttatcaaaagaattgtcctagtcgccattcactggtag
gagagtgcccatttgggaactggcaactttattggccaggtacacgggta
tcgcgcagggcagaaatgggcagcgtg
gaattctttagttaccaaatgaaagaaataggttgagagaaaatctgggt
gaaaagtttgctttgatgttattacaaatgagctcctcgttgttagggaa
gccaacattttatagatggtggtgactattcagtagcctccagagggaaa
tatggtatgcaatgtaatgggaaataatgaacaaaagtttccgctaatgc
catattaagtatacaatccatttaacatagagcctgaaggttatgtaaca
aataatcctttcttatacaaagtttcttgtattccttcttcatattactc
taccctttaacattttatcaatttctcttgtaactggtactgttcatatt
ttttgttcctgttcttttatgtcatcaaatttactaatggagaacatact
tctgaaaatgcaaattgatttctctcacaacacttcaaggactagaaccc
tgtattttcaaggccatttgaaatttgtattacatgttttctggattcgg
ttatttcaaattgctaaattcacaggtcagttacttccctgaaaaatcat
taccttgcacttattttgcttgatctaattaaatctgaaagaagtttaca
tcagtctttttatacctaaaaactttagaagtttaatttatcatttcaaa
caaatatattttctcaatttatgtagaatgtattcattaaaaaatgttga
gccccaagatactgaatagaaatataaattatacactacctagctaccta
ctgtatactttgatatataggatactttgcttccatgggtttcacacttt
atactatgtataaagtattttaaacactttatttttttgaataatttgaa
gatttattctaaatccaggtacacttataaaagataatatgtatgctttg
taaaaaatatagtgtgtgtgtgtatatatatatatatacacagatagata
tgtatacatctatctatctgtttatatatatatatatatatatatatata
tatataaacatattagtgatcccctatttgaaagaaagatatgtgaacct
tcaattttttatggtcatggatgcataaaatggtgcattaagccaaatta

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_38940740_38941840
seq2: B6Ng01-233N18.g_68_1167

seq1  GAATTCTTTAGTTACCAAATGAAAGAAATAGGTTGAGAGAAAATCTGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGTTACCAAATGAAAGAAATAGGTTGAGAGAAAATCTGGGT  50

seq1  GAAAAGTTTGCTTTGATGTTATTACAAATGAGCTCCTCGTTGTTAGGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTTTGCTTTGATGTTATTACAAATGAGCTCCTCGTTGTTAGGGAA  100

seq1  GCCAACATTTTATAGATGGTGGTGACTATTCAGTAGCCTCCAGAGGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACATTTTATAGATGGTGGTGACTATTCAGTAGCCTCCAGAGGGAAA  150

seq1  TATGGTATGCAATGTAATGGGAAATAATGAACAAAAGTTTCCGCTAATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTATGCAATGTAATGGGAAATAATGAACAAAAGTTTCCGCTAATGC  200

seq1  CATATTAAGTATACAATCCATTTAACATAGAGCCTGAAGGTTATGTAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTAAGTATACAATCCATTTAACATAGAGCCTGAAGGTTATGTAACA  250

seq1  AATAATCCTTTCTTATACAAAGTTTCTTGTATTCCTTCTTCATATTACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATCCTTTCTTATACAAAGTTTCTTGTATTCCTTCTTCATATTACTC  300

seq1  TACCCTTTAACATTTTATCAATTTCTCTTGTAACTGGTACTGTTCATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTTTAACATTTTATCAATTTCTCTTGTAACTGGTACTGTTCATATT  350

seq1  TTTTGTTCCTGTTCTTTTATGTCATCAAATTTACTAATGGAGAACATACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTCCTGTTCTTTTATGTCATCAAATTTACTAATGGAGAACATACT  400

seq1  TCTGAAAATGCAAATTGATTTCTCTCACAACACTTCAAGGACTAGAACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAATGCAAATTGATTTCTCTCACAACACTTCAAGGACTAGAACCC  450

seq1  TGTATTTTCAAGGCCATTTGAAATTTGTATTACATGTTTTCTGGATTCGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTTCAAGGCCATTTGAAATTTGTATTACATGTTTTCTGGATTCGG  500

seq1  TTATTTCAAATTGCTAAATTCACAGGTCAGTTACTTCCCTGAAAAATCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCAAATTGCTAAATTCACAGGTCAGTTACTTCCCTGAAAAATCAT  550

seq1  TACCTTGCACTTATTTTGCTTGATCTAATTAAATCTGAAAGAAGTTTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTGCACTTATTTTGCTTGATCTAATTAAATCTGAAAGAAGTTTACA  600

seq1  TCAGTCTTTTTATACCTAAAAACTTTAGAAGTTTAATTTATCATTTCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTTTTTATACCTAAAAACTTTAGAAGTTTAATTTATCATTTCAAA  650

seq1  CAAATATATTTTCTCAATTTATGTAGAATGTATTCATTAAAAAATGTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATATTTTCTCAATTTATGTAGAATGTATTCATTAAAAAATGTTGA  700

seq1  GCCCCAAGATACTGAATAGAAATATAAATTATACACTACCTAGCTACCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAAGATACTGAATAGAAATATAAATTATACACTACCTAGCTACCTA  750

seq1  CTGTATACTTTGATATATAGGATACTTTGCTTCCATGGGTTTCACACTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATACTTTGATATATAGGATACTTTGCTTCCATGGGTTTCACACTTT  800

seq1  ATACTATGTATAAAGTATTTTAAACACTTTATTTTTTTGAATAATTTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATGTATAAAGTATTTTAAACACTTTATTTTTTTGAATAATTTGAA  850

seq1  GATTTATTCTAAATCCAGGTACACTTATAAAAGATAATATGTATGCTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATTCTAAATCCAGGTACACTTATAAAAGATAATATGTATGCTTTG  900

seq1  TAAAAAATATAGTGTGTGTGTGTATATATATATATATACACAGATAGATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATATAGTGTGTGTGTGTATATATATATATATACACAGATAGATA  950

seq1  TGTATACATCTATCTATCTGTTTATATATATATATATATATATATATATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATACATCTATCTATCTGTTTATATATATATATATATATATATATATA  1000

seq1  TATATAAACATTATTAGTGATCCCCTATTTGAAAGAAAGATATTGTTGAA  1050
      |||||||||| ||||||||||||||||||||||||||||||| |||  | 
seq2  TATATAAACA-TATTAGTGATCCCCTATTTGAAAGAAAGATA-TGTGAAC  1048

seq1  CTTCATATTTTTATGTTTATGGATGCATAAAATGGTGGTATTAG-CAAAT  1099
      |||||  |||||||| | |||||||||||||||||||   | || |||||
seq2  CTTCAATTTTTTATGGTCATGGATGCATAAAATGGTGCATTAAGCCAAAT  1098

seq1  TA  1101
      ||
seq2  TA  1100