BAC Information

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BAC

Clone NameB6Ng01-238A15
Chromosome4 (Build37)
Map Location 86,231,749 - 86,337,750
singlet/doubletdoublet
Overlap gene6230416J20Rik, LOC100040388, Adfp
Upstream geneA930009N24, LOC668052, Adamtsl1, 4930500O09Rik, Rraga
Downstream geneEG624685, Dennd4c, Rps6, Asah3l, Slc24a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238A15.bB6Ng01-238A15.g
ACCGA048838GA048839
length1,0101,159
definitionB6Ng01-238A15.b B6Ng01-238A15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,336,731 - 86,337,750)(86,231,749 - 86,232,909)
sequence
gaattctatgcacaggcttgtgtgccaccatgccctgctttatattcgtc
aaaaacaaaacagaatgctgaacaataaaaagtcaagctatttatctgga
catgtgctccttacccttgggaggcagagatagaaggaaaacctcaactt
caaaggttaacctgctctacatggcaagctccaggccaaccaagattaca
ggctgagaccctgtggcattttgaatccttctgtcactggagcaaggatt
aggagatatagaattatacaaatggagtctggatacaatgtttccatggt
gaaaccattctcctcctaaacaccctttgtgacgggaggtctcatgcttt
aatgatgtagagtatcttcccactctagtgtgcctgagcctccaggcagg
cagcgtgtggttccgctggggcaaaggtgaaggagcaggagttgtaactg
gagaataggtgggtcaaaaatgtgatttatagccttggattttactatga
gggacggacatgaaacatttttaaagccccctgcccccttttgagatagt
gtcttaccctgtaaactaggctgttctcaaactcagagatccatctctgt
ctcctaagtgctaggattataggcaggaaccaccaaacctagctttgaaa
ggtttggaacagaggattgcgttgaggctgtattggaaaacacaggttta
gcgagtggggtgaagtggagaacttctgaaatatactagttaagaaacca
ttgttagctggatgtggttctgttggtcgggataaagcagagaatctgga
attaaagcctgcctggttactgagtgaggtcaaatgaaaggtaggctagg
gtgtggctcgccaggagagcacttgcttatcctacgttcagtcccacaag
gaaaagccactgtgaactggtcatgggggttatgcgctgaggattgtaat
cctacattcagagtagaggcagagatgctttgatttaggaccagcgtttc
tcaaaacagg
gaattctttgcagtatctgatagaggagagtcttcctcttcagagtctgc
tattgtcttatatgtcaaggttttctctatgggagtcctcatatttggat
cctgaaaagagacacacattataacttaatgatcatggctggtattgaag
ctctttaaatggcagatctaaataattccattctcatttagcaagagaat
agaaatggcactagaatgggagagaaaaaaaccttgactgtaattaagtc
accaaaaataccctatttataaatcactgtcacaattagctgaagctgtt
tttaaaggcaagctatgcacctgtataatgcacctgtacttgccaaggct
ggggcaagagaactgccatgagttcaagatgggttgggctacacagcaag
ttcaagacaagtctggatcaattagcaaggccatgtctcacaataatgaa
aatcgctttagaccataccttctcaaggagtgtggaactgtttgtatctg
aggacgcggcacactgtaagggaaaaggcacagggctgaaagaaaaaaga
cagcaaatctcagttatgtggagggaggcatccactaacttcatggatct
gaataagaaattgtctgccccgtatctgtccatgacgatttcactcaatt
cgccctggtcatcaaaaggcagtttactctggggaggtccagtgacaact
ggagcagtacttctgcccaagttgcgtatcactctcccgaagaactccaa
ctttcttactatatatttttatgcctaaaatatttttataaggttaaata
atgacatacaacaatctgtatacaacttaaaaattaattctactaactag
aattgcattattacaatgtcctcagcaccctaacaatacaatttcatagt
agcagagacttccatattcttgcagccaggcatggtagcacacacctgta
gtgtcagcatttcagagttgagtcaagggcagtggtggcgcacgctttaa
tcccagcacttggggagaaagaggcaaggcaatttctggagttcaggcca
atccttggtcttaacagaagtggagttcaagatagccaggctacacagaa
gaaacctgtcttgaaaaaaaaagtccaaacagactttgctacaaggccga
aactgtctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_86336731_86337750
seq2: B6Ng01-238A15.b_48_1057 (reverse)

seq1  CCTGTTTTTGAGAAAACGCTGGTCTTAAATTCAAAGCAATCTTCCTGCCT  50
      |||| ||||||| ||||||||||| |||| ||||||| ||||  ||||||
seq2  CCTG-TTTTGAG-AAACGCTGGTCCTAAA-TCAAAGC-ATCT--CTGCCT  44

seq1  CTACCTCCTGAATGTAGGATTACAATCCTCAGGCGCATAACCCCCATGAC  100
      ||||   |||||||||||||||||||||||| ||||||||||||||||||
seq2  CTAC--TCTGAATGTAGGATTACAATCCTCA-GCGCATAACCCCCATGAC  91

seq1  CAGTTCACAGTGGCTTTTCCTTGTGGGACTGAACGTAGGATAAGCAAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCACAGTGGCTTTTCCTTGTGGGACTGAACGTAGGATAAGCAAGTG  141

seq1  CTCTCCTGGCGAGCCACACCCTAGCCTACCTTTCATTTGACCTCACTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTGGCGAGCCACACCCTAGCCTACCTTTCATTTGACCTCACTCAG  191

seq1  TAACCAGGCAGGCTTTAATTCCAGATTCTCCTGCTTTATCCCGACCAACA  250
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TAACCAGGCAGGCTTTAATTCCAGATTCT-CTGCTTTATCCCGACCAACA  240

seq1  GAACCACATCCAGCTAACAATGGTTTCTTAACTAGTATATTTCAGAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCACATCCAGCTAACAATGGTTTCTTAACTAGTATATTTCAGAAGTT  290

seq1  CTCCACTTCACCCCACTCGCTAAACCTGTGTTTTCCAATACAGCCTCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTTCACCCCACTCGCTAAACCTGTGTTTTCCAATACAGCCTCAAC  340

seq1  GCAATCCTCTGTTCCAAACCTTTCAAAGCTAGGTTTGGTGGTTCCTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCCTCTGTTCCAAACCTTTCAAAGCTAGGTTTGGTGGTTCCTGCCT  390

seq1  ATAATCCTAGCACTTAGGAGACAGAGATGGATCTCTGAGTTTGAGAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCCTAGCACTTAGGAGACAGAGATGGATCTCTGAGTTTGAGAACAG  440

seq1  CCTAGTTTACAGGGTAAGACACTATCTCAAAAGGGGGCAGGGGGCTTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTTTACAGGGTAAGACACTATCTCAAAAGGGGGCAGGGGGCTTTAA  490

seq1  AAATGTTTCATGTCCGTCCCTCATAGTAAAATCCAAGGCTATAAATCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTCATGTCCGTCCCTCATAGTAAAATCCAAGGCTATAAATCACA  540

seq1  TTTTTGACCCACCTATTCTCCAGTTACAACTCCTGCTCCTTCACCTTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGACCCACCTATTCTCCAGTTACAACTCCTGCTCCTTCACCTTTGC  590

seq1  CCCAGCGGAACCACACGCTGCCTGCCTGGAGGCTCAGGCACACTAGAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCGGAACCACACGCTGCCTGCCTGGAGGCTCAGGCACACTAGAGTG  640

seq1  GGAAGATACTCTACATCATTAAAGCATGAGACCTCCCGTCACAAAGGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATACTCTACATCATTAAAGCATGAGACCTCCCGTCACAAAGGGTG  690

seq1  TTTAGGAGGAGAATGGTTTCACCATGGAAACATTGTATCCAGACTCCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGAGGAGAATGGTTTCACCATGGAAACATTGTATCCAGACTCCATT  740

seq1  TGTATAATTCTATATCTCCTAATCCTTGCTCCAGTGACAGAAGGATTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAATTCTATATCTCCTAATCCTTGCTCCAGTGACAGAAGGATTCAA  790

seq1  AATGCCACAGGGTCTCAGCCTGTAATCTTGGTTGGCCTGGAGCTTGCCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCACAGGGTCTCAGCCTGTAATCTTGGTTGGCCTGGAGCTTGCCAT  840

seq1  GTAGAGCAGGTTAACCTTTGAAGTTGAGGTTTTCCTTCTATCTCTGCCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGCAGGTTAACCTTTGAAGTTGAGGTTTTCCTTCTATCTCTGCCTC  890

seq1  CCAAGGGTAAGGAGCACATGTCCAGATAAATAGCTTGACTTTTTATTGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGGTAAGGAGCACATGTCCAGATAAATAGCTTGACTTTTTATTGTT  940

seq1  CAGCATTCTGTTTTGTTTTTGACGAATATAAAGCAGGGCATGGTGGCACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTCTGTTTTGTTTTTGACGAATATAAAGCAGGGCATGGTGGCACA  990

seq1  CAAGCCTGTGCATAGAATTC  1020
      ||||||||||||||||||||
seq2  CAAGCCTGTGCATAGAATTC  1010

seq1: chr4_86231749_86232909
seq2: B6Ng01-238A15.g_68_1226

seq1  GAATTCTTTGCAGTATCTGATAGAGGAGAGTCTTCCTCTTCAGAGTCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCAGTATCTGATAGAGGAGAGTCTTCCTCTTCAGAGTCTGC  50

seq1  TATTGTCTTATATGTCAAGGTTTTCTCTATGGGAGTCCTCATATTTGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTCTTATATGTCAAGGTTTTCTCTATGGGAGTCCTCATATTTGGAT  100

seq1  CCTGAAAAGAGACACACATTATAACTTAATGATCATGGCTGGTATTGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAAGAGACACACATTATAACTTAATGATCATGGCTGGTATTGAAG  150

seq1  CTCTTTAAATGGCAGATCTAAATAATTCCATTCTCATTTAGCAAGAGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTAAATGGCAGATCTAAATAATTCCATTCTCATTTAGCAAGAGAAT  200

seq1  AGAAATGGCACTAGAATGGGAGAGAAAAAAACCTTGACTGTAATTAAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGGCACTAGAATGGGAGAGAAAAAAACCTTGACTGTAATTAAGTC  250

seq1  ACCAAAAATACCCTATTTATAAATCACTGTCACAATTAGCTGAAGCTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAATACCCTATTTATAAATCACTGTCACAATTAGCTGAAGCTGTT  300

seq1  TTTAAAGGCAAGCTATGCACCTGTATAATGCACCTGTACTTGCCAAGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGGCAAGCTATGCACCTGTATAATGCACCTGTACTTGCCAAGGCT  350

seq1  GGGGCAAGAGAACTGCCATGAGTTCAAGATGGGTTGGGCTACACAGCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAAGAGAACTGCCATGAGTTCAAGATGGGTTGGGCTACACAGCAAG  400

seq1  TTCAAGACAAGTCTGGATCAATTAGCAAGGCCATGTCTCACAATAATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGACAAGTCTGGATCAATTAGCAAGGCCATGTCTCACAATAATGAA  450

seq1  AATCGCTTTAGACCATACCTTCTCAAGGAGTGTGGAACTGTTTGTATCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGCTTTAGACCATACCTTCTCAAGGAGTGTGGAACTGTTTGTATCTG  500

seq1  AGGACGCGGCACACTGTAAGGGAAAAGGCACAGGGCTGAAAGAAAAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACGCGGCACACTGTAAGGGAAAAGGCACAGGGCTGAAAGAAAAAAGA  550

seq1  CAGCAAATCTCAGTTATGTGGAGGGAGGCATCCACTAACTTCATGGATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAATCTCAGTTATGTGGAGGGAGGCATCCACTAACTTCATGGATCT  600

seq1  GAATAAGAAATTGTCTGCCCCGTATCTGTCCATGACGATTTCACTCAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGAAATTGTCTGCCCCGTATCTGTCCATGACGATTTCACTCAATT  650

seq1  CGCCCTGGTCATCAAAAGGCAGTTTACTCTGGGGAGGTCCAGTGACAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCTGGTCATCAAAAGGCAGTTTACTCTGGGGAGGTCCAGTGACAACT  700

seq1  GGAGCAGTACTTCTGCCCAAGTTGCGTATCACTCTCCCGAAGAACTCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGTACTTCTGCCCAAGTTGCGTATCACTCTCCCGAAGAACTCCAA  750

seq1  CTTTCTTACTATATATTTTTATGCCTAAAATATTTTTATAAGGTTAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTACTATATATTTTTATGCCTAAAATATTTTTATAAGGTTAAATA  800

seq1  ATGACATACAACAATCTGTATACAACTTAAAAATTAATTCTACTAACTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATACAACAATCTGTATACAACTTAAAAATTAATTCTACTAACTAG  850

seq1  AATTGCATTATTACAATGTCCTCAGCACCCTAACAATACAATTTCATAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCATTATTACAATGTCCTCAGCACCCTAACAATACAATTTCATAGT  900

seq1  AGCAGAGACTTCCATATTCTTGCAGCCAGGCATGGTAGCACACACCTGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGACTTCCATATTCTTGCAGCCAGGCATGGTAGCACACACCTGTA  950

seq1  GTGTCAGCATTTCAGAAGTTGAGTCAAAGGGCAGTGGTGGCGCACGCCTT  1000
      ||||||||||||||| ||||||||| |||||||||||||||||||| |||
seq2  GTGTCAGCATTTCAG-AGTTGAGTC-AAGGGCAGTGGTGGCGCACG-CTT  997

seq1  TAATCCCAGCACTT-GGGAGAAAGAGGCAGGCAAATTTCT-GAGTTCAAG  1048
      |||||||||||||| |||||||||||||| |  ||||||| ||||||| |
seq2  TAATCCCAGCACTTGGGGAGAAAGAGGCAAGGCAATTTCTGGAGTTCAGG  1047

seq1  GCCATCC-TGGTCT--ACAG-AGT-GAGTTCCAGGATAGCCAGGGCTACA  1093
       | |||| ||||||  |||| ||| ||||| || |||||||| |||||||
seq2  CCAATCCTTGGTCTTAACAGAAGTGGAGTT-CAAGATAGCCA-GGCTACA  1095

seq1  CAGAGAAACCCTGTCTTGAAAAAAAAAAAAGTTCCAAACCAGACTTGGCT  1143
      ||||  || ||||||||||||||||||     |||||| ||||||| |||
seq2  CAGAAGAAACCTGTCTTGAAAAAAAAA----GTCCAAA-CAGACTTTGCT  1140

seq1  ACAAAG-CGAGACTGTCTC  1161
      |||| | ||| ||||||||
seq2  ACAAGGCCGAAACTGTCTC  1159