BAC Information

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BAC

Clone NameB6Ng01-241J14
Chromosome4 (Build37)
Map Location 6,632,917 - 6,757,492
singlet/doubletdoublet
Overlap geneTox
Upstream gene1700012H17Rik, LOC669309, 3110003A22Rik, Cyp7a1, Sdcbp, Nsmaf, LOC100039397, LOC100039414
Downstream geneLOC100039421, LOC666700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241J14.bB6Ng01-241J14.g
ACCGA051473GA051474
length1,017998
definitionB6Ng01-241J14.b B6Ng01-241J14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,632,917 - 6,633,924)(6,756,493 - 6,757,492)
sequence
gaattctcttcagagtcaggaggacaccattttagatagcctcacacaac
tcttttgccttttgattgtgaattcagtttttggagctcactaatactga
gtcgaagccaaagctgtgggttctatcttggtgatgtctggagaaaagag
tgatgtgtgaaaatagtgtaacaagattgattttctagtgtggctcataa
acttttcctgactccagttctaaatgggagtttcagaaaaatctctcaaa
ccctgggagcaataaaaaaatgagtttctggcctcccaaggtgacttttt
tgaatgcaacactcatttggggaatataaatcctggtctatgtggtgaaa
tgaaaccacttccattgctttaaagttttctctattgccttcaacataat
gatttagactcatgtctaggaatttcttagtctatggaaaaactatattt
ccttaagatgtatttaataacccaagtcaatatgacctcccatagtgaac
aaccaagccagaacaactacgctcgcttcgtggtcctcacaggatttagg
gagcctaattcagttaggaagacatgaacaaatgtatctttgtttatgtt
tagaacattttcatcttttaatgggatggaggcaagagaaaaatatttaa
atatttaaattcaaataattaaattaaaattaatgttactttttctcacc
tctacagtatctttttaaaaattttttattaaatattttcttcatttaca
tttcaagtgctatcccaaaagtcccctataccctcccccggccccccccc
ccctgtcctgctccccaacctactcacttccacttcttggccctggcgtt
cccctgtactggggcatataagtttgcaacaccaaggggcttagagtatc
tttttttaaagaggtaacttgcaaacaaattgaaactatgaacccagcta
tctttttttgacaccacaatggttcttttttctactcctgtgcattacta
cctaataatactaaaat

gaattctctgccgaaaaaaaaaaaaagtcagtgtcatccacattccattt
gcagatggaataatgtggactgggaatacaaaatagagaccagcctgtgg
caaaggaaatggggctgcagacggagaaaataatggaaacaggctactcg
ggggcatggaatatgcaaggcgagtggttcaagaagtgagaacctatgca
attaaacaggaagtgagtacatatgcaattaaacaggaagtgagtaccta
tgcaatcaaacaggaagtgagtacctatgcaattaaacaggaaatgagta
cctatgcaatcaaacaggagactgagaccttccagaaattaggtgagaac
tctcttttcctgttgcactgaaatgggagctggagaaggcctttactcaa
atggctgaaaaggcctgcaagcagaacaatccctagattttttttttcta
accctaatctctttagttgtagtcttagaattaaaccctttccttagcaa
tttgcccctttgccaaaatttttcctgggaggatccccaatctccagccc
ctgacctgccccaaatccaggacatgtgagccataatgctagcaatatat
tttttgtgcaaaattatcatggtcattttggctcacaaagttcttcatct
tttggcttggatgggaactctgcagtcccggactgcatggttgcgtgggt
gcgtggttccttaaggaggcaagctgttggcctttactcagtgagtgaat
cccagcattcattatcctttgtacactctctgttccttcttatttgattc
ttcaattttttaccgtgcaacttagggactgagtagattagatggttcag
tcagcaaagcacttgcctcacaagcacgacgccctgagtccaatccccag
cccaccccacccaaaggccagatgcagttacctatgcctgtaattcctag
agctgggatgctgagcaggagaatcactggactcactggctaaacagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_6632917_6633924
seq2: B6Ng01-241J14.b_46_1062

seq1  GAATTCTCTTCAGAGTCAGGAGGACACCATTTTAGATAGCCTCACACAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCAGAGTCAGGAGGACACCATTTTAGATAGCCTCACACAAC  50

seq1  TCTTTTGCCTTTTGATTGTGAATTCAGTTTTTGGAGCTCACTAATACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGCCTTTTGATTGTGAATTCAGTTTTTGGAGCTCACTAATACTGA  100

seq1  GTCGAAGCCAAAGCTGTGGGTTCTATCTTGGTGATGTCTGGAGAAAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGAAGCCAAAGCTGTGGGTTCTATCTTGGTGATGTCTGGAGAAAAGAG  150

seq1  TGATGTGTGAAAATAGTGTAACAAGATTGATTTTCTAGTGTGGCTCATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTGTGAAAATAGTGTAACAAGATTGATTTTCTAGTGTGGCTCATAA  200

seq1  ACTTTTCCTGACTCCAGTTCTAAATGGGAGTTTCAGAAAAATCTCTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCCTGACTCCAGTTCTAAATGGGAGTTTCAGAAAAATCTCTCAAA  250

seq1  CCCTGGGAGCAATAAAAAAATGAGTTTCTGGCCTCCCAAGGTGACTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGAGCAATAAAAAAATGAGTTTCTGGCCTCCCAAGGTGACTTTTT  300

seq1  TGAATGCAACACTCATTTGGGGAATATAAATCCTGGTCTATGTGGTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCAACACTCATTTGGGGAATATAAATCCTGGTCTATGTGGTGAAA  350

seq1  TGAAACCACTTCCATTGCTTTAAAGTTTTCTCTATTGCCTTCAACATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCACTTCCATTGCTTTAAAGTTTTCTCTATTGCCTTCAACATAAT  400

seq1  GATTTAGACTCATGTCTAGGAATTTCTTAGTCTATGGAAAAACTATATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAGACTCATGTCTAGGAATTTCTTAGTCTATGGAAAAACTATATTT  450

seq1  CCTTAAGATGTATTTAATAACCCAAGTCAATATGACCTCCCATAGTGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAGATGTATTTAATAACCCAAGTCAATATGACCTCCCATAGTGAAC  500

seq1  AACCAAGCCAGAACAACTACGCTCGCTTCGTGGTCCTCACAGGATTTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGCCAGAACAACTACGCTCGCTTCGTGGTCCTCACAGGATTTAGG  550

seq1  GAGCCTAATTCAGTTAGGAAGACATGAACAAATGTATCTTTGTTTATGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTAATTCAGTTAGGAAGACATGAACAAATGTATCTTTGTTTATGTT  600

seq1  TAGAACATTTTAATCTTTTAATGGGATGGAGGCAAGAGAAAAATATTTAA  650
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TAGAACATTTTCATCTTTTAATGGGATGGAGGCAAGAGAAAAATATTTAA  650

seq1  ATATTTAAATTCAAATAATTAAATTAAAATTAATGTTACTTTTTCTCACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAAATTCAAATAATTAAATTAAAATTAATGTTACTTTTTCTCACC  700

seq1  TCTAGAGTATCTTTTTAAAAATTTTTTATTAAATATTTTCTTCATTTACA  750
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGTATCTTTTTAAAAATTTTTTATTAAATATTTTCTTCATTTACA  750

seq1  TTTCAAGTGCTATCCCAAAAGTCCCCTATACCCTCCCCCGG-CCCCCCCC  799
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTTCAAGTGCTATCCCAAAAGTCCCCTATACCCTCCCCCGGCCCCCCCCC  800

seq1  CCCTGTCCTGCTCCCCAACCTACTCACTTCCACTTCTTGGCCCTGGCGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCCTGCTCCCCAACCTACTCACTTCCACTTCTTGGCCCTGGCGTT  850

seq1  CCCCTGTACTGGGGCATATAAGTTTGCAACACCAAGGGGC-TAGAGTATC  898
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCCCTGTACTGGGGCATATAAGTTTGCAACACCAAGGGGCTTAGAGTATC  900

seq1  --TTTTTAAAGAGGTAACTTTGCAAACAAATTGAAACTATG-ACCCAGCT  945
        |||||||||||||||| |||||||||||||||||||||| ||||||||
seq2  TTTTTTTAAAGAGGTAAC-TTGCAAACAAATTGAAACTATGAACCCAGCT  949

seq1  ATC--TTTTTGACCACACAATGGTTC-TTTTTCTACTCCTGTGCA-TACT  991
      |||  ||||||||  ||||||||||| |||||||||||||||||| ||||
seq2  ATCTTTTTTTGACACCACAATGGTTCTTTTTTCTACTCCTGTGCATTACT  999

seq1  ACC-AATAATACTAAAAT  1008
      ||| ||||||||||||||
seq2  ACCTAATAATACTAAAAT  1017


seq1: chr4_6756493_6757492
seq2: B6Ng01-241J14.g_68_1065 (reverse)

seq1  GCTGTTTAGCCAGTGAGTTCCAGTGATTCTCCTGCCTCAGCCATCCCAGC  50
      ||||||||||||||||| |||||||||||||||| ||||| |||||||||
seq2  GCTGTTTAGCCAGTGAG-TCCAGTGATTCTCCTG-CTCAG-CATCCCAGC  47

seq1  TCTAGGAA-TACAGGCATAGGTAACTGCATCTGGCCTTTGGGTGGGGTGG  99
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGAATTACAGGCATAGGTAACTGCATCTGGCCTTTGGGTGGGGTGG  97

seq1  GCTGGGGATTGGACTCAGGGCGTCGTGCTTGTGAGGCAAGTGCTTTGCTG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGATTGGACTCAGGGCGTCGTGCTTGTGAGGCAAGTGCTTTGCTG  147

seq1  ACTGAACCATCTAATCTACTCAGTCCCTAAGTTGCACGGTAAAAAATTGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACCATCTAATCTACTCAGTCCCTAAGTTGCACGGTAAAAAATTGA  197

seq1  AGAATCAAATAAGAAGGAACAGAGAGTGTACAAAGGATAATGAATGCTGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCAAATAAGAAGGAACAGAGAGTGTACAAAGGATAATGAATGCTGG  247

seq1  GATTCACTCACTGAGTAAAGGCCAACAGCTTGCCTCCTTAAGGAACCACG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCACTCACTGAGTAAAGGCCAACAGCTTGCCTCCTTAAGGAACCACG  297

seq1  CACCCACGCAACCATGCAGTCCGGGACTGCAGAGTTCCCATCCAAGCCAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACGCAACCATGCAGTCCGGGACTGCAGAGTTCCCATCCAAGCCAA  347

seq1  AAGATGAAGAACTTTGTGAGCCAAAATGACCATGATAATTTTGCACAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAAGAACTTTGTGAGCCAAAATGACCATGATAATTTTGCACAAAA  397

seq1  AATATATTGCTAGCATTATGGCTCACATGTCCTGGATTTGGGGCAGGTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTGCTAGCATTATGGCTCACATGTCCTGGATTTGGGGCAGGTCA  447

seq1  GGGGCTGGAGATTGGGGATCCTCCCAGGAAAAATTTTGGCAAAGGGGCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGGAGATTGGGGATCCTCCCAGGAAAAATTTTGGCAAAGGGGCAA  497

seq1  ATTGCTAAGGAAAGGGTTTAATTCTAAGACTACAACTAAAGAGATTAGGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTAAGGAAAGGGTTTAATTCTAAGACTACAACTAAAGAGATTAGGG  547

seq1  TTAGAAAAAAAAAATCTAGGGATTGTTCTGCTTGCAGGCCTTTTCAGCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAAAAAAAATCTAGGGATTGTTCTGCTTGCAGGCCTTTTCAGCCA  597

seq1  TTTGAGTAAAGGCCTTCTCCAGCTCCCATTTCAGTGCAACAGGAAAAGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTAAAGGCCTTCTCCAGCTCCCATTTCAGTGCAACAGGAAAAGAG  647

seq1  AGTTCTCACCTAATTTCTGGAAGGTCTCAGTCTCCTGTTTGATTGCATAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCACCTAATTTCTGGAAGGTCTCAGTCTCCTGTTTGATTGCATAG  697

seq1  GTACTCATTTCCTGTTTAATTGCATAGGTACTCACTTCCTGTTTGATTGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCATTTCCTGTTTAATTGCATAGGTACTCACTTCCTGTTTGATTGC  747

seq1  ATAGGTACTCACTTCCTGTTTAATTGCATATGTACTCACTTCCTGTTTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTACTCACTTCCTGTTTAATTGCATATGTACTCACTTCCTGTTTAA  797

seq1  TTGCATAGGTTCTCACTTCTTGAACCACTCGCCTTGCATATTCCATGCCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATAGGTTCTCACTTCTTGAACCACTCGCCTTGCATATTCCATGCCC  847

seq1  CCGAGTAGCCTGTTTCCATTATTTTCTCCGTCTGCAGCCCCATTTCCTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTAGCCTGTTTCCATTATTTTCTCCGTCTGCAGCCCCATTTCCTTT  897

seq1  GCCACAGGCTGGTCTCTATTTTGTATTCCCAGTCCACATTATTCCATCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGGCTGGTCTCTATTTTGTATTCCCAGTCCACATTATTCCATCTG  947

seq1  CAAATGGAATGTGGATGACACTGACTTTTTTTTTTTTTCGGCAGAGAATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGAATGTGGATGACACTGACTTTTTTTTTTTTTCGGCAGAGAATT  997

seq1  C  1000
      |
seq2  C  998


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