BAC Information

Click to search

BAC

Clone NameB6Ng01-241L24
Chromosome4 (Build37)
Map Location 111,145,786 - 111,146,900
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040381, 2310026E23Rik
Downstream geneSpata6, LOC621612, Slc5a9, LOC639774, C130057D23Rik, LOC639781, 9530098N22Rik, A430090E18Rik, A030013N09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241L24.bB6Ng01-241L24.g
ACCGA051585GA051586
length1,104968
definitionB6Ng01-241L24.b B6Ng01-241L24.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatgttcaggtaaagtgtcctggagcacaaccctgctgcacagcc
ctctacagtgtcccagagacaggtccctagcatgctccctggctagcaat
atccctgtctcctgactctgccaagccagcatcagtggagccccttgtgc
ctcccctctaatcagaacattacctcagcttgaccctgccttgcttccag
gattctgtttctctcactggcctcctgttatcctttactgcagtctcacc
ctgtcttccattaccaaagccccaccacagcggccttcccttccagctaa
taggcctccgtgttcaaatccccatgattccctgctaacatctcacagcc
aagtccagtgtctaaggtgctcactacagccttaacttgcttcacctctg
cagcttggcctctcagctgatcctgcctccacactggacttcttgcaggg
ctgaaggagaagtaaagctacacagttactgcaccttttatttcaccttt
gaagggcactcccacacttttctgaaagaaatttgttttttttttttttt
ttttttttacattttagctgggtgtggggactgaggtaaaacaagacatg
agagtggggacagtttgtggacatttctaggaaaactgcatggccctggg
tcttcctcctacatcttctctctgcctgtaacaccagtgcctattgtcta
ttcagaggaatagcccaggaactggtcagtgccccttccagaacactata
agagaactattaatctttctcatatcttcttgggctccacacatctgcag
ctccaaccttgagatactagtctatgctaatctttctagatctacccatc
cctcattcattcattcattcattcatcattcattcatcatccatcatcca
tccaatggctccttggagaggacagaggccaggctccagactctgcttgt
ggccctgccctggcccatgctctaggagctatgggacacaggaggagctc
tggctgctttacttcatatcaggtgctggctaggcactgggacagatggc
tggggggagtatttggctggagtgataacatttggagatcattttatgaa
tgct

gaattcttttaaagatatggaatcagccaaagtttccatcaacatataaa
tgaataataaaaattgtcatatatacaataaagaatgcaattcagccttt
aagattgatgtttgtctggcaacctacagattgagaaaagatctttacta
accctacatctgatagagggctaatatccaatatataaagaactcaagaa
gttagattccagaaaaccaaatagcccaattataaaatgggatacagccg
ggcgtggtggcgcatgcctttaatcccagcacttgagaggcagaggcagg
cggatttctgagttcaaggccagcctggtctataaagtgagtttcaggac
agccagggctatacagataaaccctgtctcgaaggaaaaaaaatacaata
aaaatgggatacaaagctaaacaaagaattctcaactgaggactctcaca
tggccgagaagcacctaaggaaatgttcaatatccttagtcatctgggaa
atgcaaatcaaaatgacactgagagtccacaccttacaccaatcagaatt
actaagatcaaaaactcaggagacagcagattgtggtgagaatgtagaga
aagaagagcactcctccattgctggcaggattgtaagctggtacaatcac
tttggcaatcaatctggtggttcctcagaaaattggaaatagctctacct
gaagatccagctataccactcctgggcatatacccaaaagatgctccaac
atataacaaggacacatgctccactatgttcatagcagccttatttataa
tagctagaagctggaaacaatccagatatccctcaactgaagaatggata
cagaaaatgtggtacatttaccacagtggaatactactcagctattaaaa
atgatgacttcggtaaattttgtaggcaaatggatggaactagaaaatat
cgccctgagtaaggtaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_111145786_111146900
seq2: B6Ng01-241L24.b_51_1154 (reverse)

seq1  AGCATTTCAATAAAATGATCT-CAAATGTTTATTCACT-CAG-CAAATAC  47
      ||||||   |||||||||||| ||||||||   ||||| ||| |||||||
seq2  AGCATT--CATAAAATGATCTCCAAATGTT--ATCACTCCAGCCAAATAC  46

seq1  TCACCCAAAGCCATTCTGGGCCCAGTGCCTAGCCAGCACTTGGATAATGA  97
      || |||  ||||| ||| | ||||||||||||||||||| | ||| ||||
seq2  TC-CCCCCAGCCA-TCT-GTCCCAGTGCCTAGCCAGCACCT-GAT-ATGA  91

seq1  GGTAAAGCAGGCAGAGCTCCTTCCTGTGTCCCAATAGCTCCTAGAGCATG  147
       ||||||||| ||||||||| ||||||||||| |||||||||||||||||
seq2  AGTAAAGCAGCCAGAGCTCC-TCCTGTGTCCC-ATAGCTCCTAGAGCATG  139

seq1  GGGCAGGGCAGGGCACAAAAGCAGAGTCTGGAGCCTGGCCTCTGT-CTCT  196
      || ||||||||||| || ||||||||||||||||||||||||||| ||||
seq2  GGCCAGGGCAGGGC-CACAAGCAGAGTCTGGAGCCTGGCCTCTGTCCTCT  188

seq1  TCAAGGAGCCAATGGATGGATGAATGGATGAATGAATGAATGAATGAATG  246
       |||||||||| |||||||||| ||||||| ||||||||||| |||||||
seq2  CCAAGGAGCCATTGGATGGATG-ATGGATG-ATGAATGAATG-ATGAATG  235

seq1  AATGAATGAATGAATGAGGGATGGGTAGATCTAGAAAGATTAGCATAGAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATGAATGAATGAGGGATGGGTAGATCTAGAAAGATTAGCATAGAC  285

seq1  TAGTATCTCAAGGTTGGAGCTGCAGATGTGTGGAGCCCAAGAAGATATGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATCTCAAGGTTGGAGCTGCAGATGTGTGGAGCCCAAGAAGATATGA  335

seq1  GAAAGATTAATAGTTCTCTTATAGTGTTCTGGAAGGGGCACTGACCAGTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATTAATAGTTCTCTTATAGTGTTCTGGAAGGGGCACTGACCAGTT  385

seq1  CCTGGGCTATTCCTCTGAATAGACAATAGGCACTGGTGTTACAGGCAGAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCTATTCCTCTGAATAGACAATAGGCACTGGTGTTACAGGCAGAG  435

seq1  AGAAGATGTAGGAGGAAGACCCAGGGCCATGCAGTTTTCCTAGAAATGTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATGTAGGAGGAAGACCCAGGGCCATGCAGTTTTCCTAGAAATGTC  485

seq1  CACAAACTGTCCCCACTCTCATGTCTTGTTTTACCTCAGTCCCCACACCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACTGTCCCCACTCTCATGTCTTGTTTTACCTCAGTCCCCACACCC  535

seq1  AGCTAAAATGTAAAAAAAAAAAAAAAAAAAAAAACAAATTTCTTTCAGAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAAATGTAAAAAAAAAAAAAAAAAAAAAAACAAATTTCTTTCAGAA  585

seq1  AAGTGTGGGAGTGCCCTTCAAAGGTGAAATAAAAGGTGCAGTAACTGTGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGGGAGTGCCCTTCAAAGGTGAAATAAAAGGTGCAGTAACTGTGT  635

seq1  AGCTTTACTTCTCCTTCAGCCCTGCAAGAAGTCCAGTGTGGAGGCAGGAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTACTTCTCCTTCAGCCCTGCAAGAAGTCCAGTGTGGAGGCAGGAT  685

seq1  CAGCTGAGAGGCCAAGCTGCAGAGGTGAAGCAAGTTAAGGCTGTAGTGAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGAGAGGCCAAGCTGCAGAGGTGAAGCAAGTTAAGGCTGTAGTGAG  735

seq1  CACCTTAGACACTGGACTTGGCTGTGAGATGTTAGCAGGGAATCATGGGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTAGACACTGGACTTGGCTGTGAGATGTTAGCAGGGAATCATGGGG  785

seq1  ATTTGAACACGGAGGCCTATTAGCTGGAAGGGAAGGCCGCTGTGGTGGGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAACACGGAGGCCTATTAGCTGGAAGGGAAGGCCGCTGTGGTGGGG  835

seq1  CTTTGGTAATGGAAGACAGGGTGAGACTGCAGTAAAGGATAACAGGAGGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTAATGGAAGACAGGGTGAGACTGCAGTAAAGGATAACAGGAGGC  885

seq1  CAGTGAGAGAAACAGAATCCTGGAAGCAAGGCAGGGTCAAGCTGAGGTAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGAGAAACAGAATCCTGGAAGCAAGGCAGGGTCAAGCTGAGGTAA  935

seq1  TGTTCTGATTAGAGGGGAGGCACAAGGGGCTCCACTGATGCTGGCTTGGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGATTAGAGGGGAGGCACAAGGGGCTCCACTGATGCTGGCTTGGC  985

seq1  AGAGTCAGGAGACAGGGATATTGCTAGCCAGGGAGCATGCTAGGGACCTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCAGGAGACAGGGATATTGCTAGCCAGGGAGCATGCTAGGGACCTG  1035

seq1  TCTCTGGGACACTGTAGAGGGCTGTGCAGCAGGGTTGTGCTCCAGGACAC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGGACACTGTAGAGGGCTGTGCAGCAGGGTTGTGCTCCAGGACAC  1085

seq1  TTTACCTGAACATGAATTC  1115
      |||||||||||||||||||
seq2  TTTACCTGAACATGAATTC  1104


| Home | SequenceCutter | Blast | Download |