BAC Information

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BAC

Clone NameB6Ng01-241O08
Chromosome4 (Build37)
Map Location 145,539,833 - 145,659,839
singlet/doubletdoublet
Overlap geneLOC666386, LOC666390, LOC100041433
Upstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084
Downstream geneLOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241O08.bB6Ng01-241O08.g
ACCGA051693GA051694
length1,1091,096
definitionB6Ng01-241O08.b B6Ng01-241O08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,539,833 - 145,540,974)(145,658,784 - 145,659,839)
sequence
gaattctcagattgcctttttcagtaaagcatttctcacatacaatgcat
ttgtaaggtttctctcctgtatgaattctctgatgaatattaagatgaga
tttttgggtaaagcatttgtcacattcactacatttgtaaggtttctctc
ctgtatgaattctctgatgaatattaagatgaaatttgtgggtaaagcat
ttgtcacattcactacatttataaattttctcttctgcatgaattccctg
atggatactaagatcgatctgatgggtaaagcatttgtcacttttactac
ttctgtaacgtttcttttcatgataaattctctgctgactttgaagtttg
tctctctgggtaagatatttgtcaaatttactacatttgtaagggttcac
tccagtattatttcgtttcaccatgactttatgtttagaaataaaagcct
tctcagattctgcatttccgttgtgttttttcttctgcatgtggattccc
tgattgagactaatggaagaaaacaaagttaaactgtttacagagtcatt
gtatttgcaaacttttttattgttcctgggcttaagtcttttttggttcg
aaaattgaagagcatcagaggtgtgattagttttgtaaggtgtacattgg
gaggcttcaagtatcacattgctaagtttgtcccatttagaagacttctc
ttgaatattcatgtgttcatggacaatgtactggctgtcttgatccaaga
ccttctcatactttccacatatgcaatgattttctgaaaaaaagtgggga
ggggcaattagaggtgacatgaattacttatataaggagtaagtgattca
ataatcagtgatctcatgggattcgtactctcaagagaggtttttctcct
ttttttgaatcattacatgtatcctcaaaagaactttcaaatatggtcta
tatcaaatgattgggaaatgaatagtaaccctgctaaatttcagtttcaa
tttgggaacatcataaccccaccctccaaaatataataacccagaattgc
tcctggtgttaagggaaaagatggggaaaatggaaaaagaggcctgaagg
taggccatc
gaattcttacaaatgtattgaatgtgacaaatgttttgcccagaaatcct
atcttgttcataatcacagaaatcatacattaaagaagccttacaaatgc
agtcaatgtgacaaatgattttcccacaaacttagtctgagaatgcacca
gagaattcatacagtagagaaaacttacaaaaatgcagtgaatgtgataa
atgctttactaataaaggcagactgagaattaatcagataatttatacat
ttaaaaaaaccttacaagtattttgtatgtgataaatgcagtacccacaa
catcagtctgacaaatcaacagatatttcaaacagtagagcaacattata
aatgaaatgaatgagataatcctttaacaagaaatatcatcttaaaattc
actggagaattcttccaaaagggaaacttttcaaatacattgacggtttg
aatcctttattttggccaatctcttagaatgtaacagataatttatacag
gcaagaatcttaacaaatataatatatgctgaaatatctttgacttcatt
tcagtgcagaaaaaatatgtaaaaaaattttttatgggaaaaatagttct
cctggggaaatgtggcatatgttttacacgggtaatattcttttcaacag
tcagtgctctaaactagagaattattatgaatctgaaaacttttgaaaac
cttcatgcaatcttcaaatctaatgtcaactattatgctggcagtaactc
tgaatatatgataatgaagaaacattttcattaaacttttacttgttcac
cctcaaatattatatgatgaagtcaggtgtgaaagccagaagaatatgat
gttgtgcaacaattcatggagatagaaatgatccattccagaaaggaaac
ttaagagtgtactatcgccttcaaatgtctaataaaacctgggcagcatt
tttgttatatttaattcaaatgaagaaattgacacaaattatacttgata
gagtatttgaacaaactgagccaccaagaatgcatgttctaatcctatat
acacctaacagatggtgaaggtgttggcttgagtatccaggtattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145539833_145540974
seq2: B6Ng01-241O08.b_1_1155

seq1  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAT  50
                                                    ||||
seq2  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAT  50

seq1  TCTCAGATTGCCTTTTTCAGTAAAGCATTTCTCACATACAATGCATTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGATTGCCTTTTTCAGTAAAGCATTTCTCACATACAATGCATTTGT  100

seq1  AAGGTTTCTCTCCTGTATGAATTCTCTGATGAATATTAAGATGAGATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTCTCTCCTGTATGAATTCTCTGATGAATATTAAGATGAGATTTT  150

seq1  TGGGTAAAGCATTTGTCACATTCACTACATTTGTAAGGTTTCTCTCCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAAAGCATTTGTCACATTCACTACATTTGTAAGGTTTCTCTCCTGT  200

seq1  ATGAATTCTCTGATGAATATTAAGATGAAATTTGTGGGTAAAGCATTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTCTCTGATGAATATTAAGATGAAATTTGTGGGTAAAGCATTTGT  250

seq1  CACATTCACTACATTTATAAATTTTCTCTTCTGCATGAATTCCCTGATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCACTACATTTATAAATTTTCTCTTCTGCATGAATTCCCTGATGG  300

seq1  ATACTAAGATCGATCTGATGGGTAAAGCATTTGTCACTTTTACTACTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAAGATCGATCTGATGGGTAAAGCATTTGTCACTTTTACTACTTCT  350

seq1  GTAATGTTTCTTTTCATGATAAATTCTCTGCTGACTTTGAAGTTTGTCTC  400
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACGTTTCTTTTCATGATAAATTCTCTGCTGACTTTGAAGTTTGTCTC  400

seq1  TCTGGGTAAGATATTTGTCAAATTTACTACATTTGTAAGGGTTCACTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTAAGATATTTGTCAAATTTACTACATTTGTAAGGGTTCACTCCA  450

seq1  GTATTATTTCGTTTCACCATGACTTTATGTTTAGAAATAAAAGCCTTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATTTCGTTTCACCATGACTTTATGTTTAGAAATAAAAGCCTTCTC  500

seq1  AGATTCTGCATTTCCGTTGTGTTTTTTCTTCTGCATGTGGATTCCCTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTGCATTTCCGTTGTGTTTTTTCTTCTGCATGTGGATTCCCTGAT  550

seq1  TGAGACTAACGGTAGAAAACAAAGTTAAACTGTTTACAGAGTCATTGTAT  600
      ||||||||| || |||||||||||||||||||||||||||||||||||||
seq2  TGAGACTAATGGAAGAAAACAAAGTTAAACTGTTTACAGAGTCATTGTAT  600

seq1  TTGCAAACTTCTTTAGTGTTCCTGGGCTTAAGTCTTTTTTGGTTCGAAAA  650
      |||||||||| |||| ||||||||||||||||||||||||||||||||||
seq2  TTGCAAACTTTTTTATTGTTCCTGGGCTTAAGTCTTTTTTGGTTCGAAAA  650

seq1  TTGAAGAGCATCAGAGGTATGATTAGTTTTGTAAGGTGTACATTGGGGGG  700
      |||||||||||||||||| |||||||||||||||||||||||||||| ||
seq2  TTGAAGAGCATCAGAGGTGTGATTAGTTTTGTAAGGTGTACATTGGGAGG  700

seq1  CTTCAAGTATCACATTGCTAAGTTTGTCCCATTTAGAAGACTTCTCTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGTATCACATTGCTAAGTTTGTCCCATTTAGAAGACTTCTCTTGA  750

seq1  ATATTCATGTGTTCATGGACAATGTACTGGCTGTCTTGATCCAAGACCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCATGTGTTCATGGACAATGTACTGGCTGTCTTGATCCAAGACCTT  800

seq1  CTCATACTTTCCACATATGCAATGATTTTCTGAAAAAAAGTAGGGAGGGG  850
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTCATACTTTCCACATATGCAATGATTTTCTGAAAAAAAGTGGGGAGGGG  850

seq1  CAATTAGAGGTGACATGAATTACTTATATAAGGAGTAAGTGATTCAATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAGAGGTGACATGAATTACTTATATAAGGAGTAAGTGATTCAATAA  900

seq1  TCAGTGATCTCAT-GGATTCGTACTCTCAAGAGAGGTTTTTCTCCTTTTT  949
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCAGTGATCTCATGGGATTCGTACTCTCAAGAGAGGTTTTTCTCCTTTTT  950

seq1  TTGAATCATTACATGTATCCTCAAAAGAAC-TTCAAATATGGTCTATATC  998
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTGAATCATTACATGTATCCTCAAAAGAACTTTCAAATATGGTCTATATC  1000

seq1  AAATGATT-GGAAATG-ATAGTAA-CCTGCTAAATTTCAGTTTCAAATTG  1045
      |||||||| ||||||| ||||||| ||||||||||||||||||||| |||
seq2  AAATGATTGGGAAATGAATAGTAACCCTGCTAAATTTCAGTTTCAATTTG  1050

seq1  G--ACATCATA--CCCA-CCTC--AAATATAATAACCCAGAATTGCTCC-  1087
      |  ||||||||  |||| ||||  ||||||||||||||||||||||||| 
seq2  GGAACATCATAACCCCACCCTCCAAAATATAATAACCCAGAATTGCTCCT  1100

seq1  CGTGTTAAGGAAAAAGAGGGAAAAAAATGGAAAAGAGG-CTGAAGGTAAG  1136
       ||||||||| |||||| ||  ||||  | |||||||| |||||||| ||
seq2  GGTGTTAAGGGAAAAGATGGGGAAAATGGAAAAAGAGGCCTGAAGGT-AG  1149

seq1  GCCATC  1142
      ||||||
seq2  GCCATC  1155

seq1: chr4_145658784_145659839
seq2: B6Ng01-241O08.g_99_1161 (reverse)

seq1  GAATA-CTGGATACTCAAAGC-ACA-CTTCA-CATCTG-TAGGTGTATTA  45
      ||||| ||||||||||||  | ||| ||||| |||||| |||||||| ||
seq2  GAATACCTGGATACTCAAGCCAACACCTTCACCATCTGTTAGGTGTA-TA  49

seq1  TAGGATTAAGAACATGCATTCTTGGTGGCTCAGTTTG-TCAAATACTCTA  94
      ||||||| ||||||||||||||||||||||||||||| ||||||||||||
seq2  TAGGATT-AGAACATGCATTCTTGGTGGCTCAGTTTGTTCAAATACTCTA  98

seq1  TCAAGTATAATTTGTGTCAATTTCTTCATTTGAATTAAATATA--CAAAA  142
      |||||||||||||||||||||||||||||||||||||||||||   ||||
seq2  TCAAGTATAATTTGTGTCAATTTCTTCATTTGAATTAAATATAACAAAAA  148

seq1  TGCTGCC--AGTTTTATTAGACATTTTGAAGGCGATAGTACACTCTTTAA  190
      |||||||   ||||||||||||| ||||||||||||||||||||| ||||
seq2  TGCTGCCCAGGTTTTATTAGACA-TTTGAAGGCGATAGTACACTC-TTAA  196

seq1  GTTTCC-TTCTGGAATGGATCATTTCTATCTCCATGAATTGTTGCACAAC  239
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTTTCTGGAATGGATCATTTCTATCTCCATGAATTGTTGCACAAC  246

seq1  ATCATATTCTTCTGGCTTTCACACCTGACTTCATCATATAATATTTGAGG  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATTCTTCTGGCTTTCACACCTGACTTCATCATATAATATTTGAGG  296

seq1  GTGAACAAGTAAAAGTTTAATGAAAATGTTTCTTCATTATCATATATTCA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACAAGTAAAAGTTTAATGAAAATGTTTCTTCATTATCATATATTCA  346

seq1  GAGTTACTGCCAGCATAATAGTTGACATTAGATTTGAAGATTGCATGAAG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTACTGCCAGCATAATAGTTGACATTAGATTTGAAGATTGCATGAAG  396

seq1  GTTTTCAAAAGTTTTCAGATTCATAATAATTCTCTAGTTTAGAGCACTGA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAAAAGTTTTCAGATTCATAATAATTCTCTAGTTTAGAGCACTGA  446

seq1  CTGTTGAAAAGAATATTACCCGTGTAAAACATATGCCACATTTCCCCAGG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGAAAAGAATATTACCCGTGTAAAACATATGCCACATTTCCCCAGG  496

seq1  AGAACTATTTTTCCCATAAAAAATTTTTTTACATATTTTTTCTGCACTGA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTATTTTTCCCATAAAAAATTTTTTTACATATTTTTTCTGCACTGA  546

seq1  AATGAAGTCAAAGATATTTCAGCATATATTATATTTGTTAAGATTCTTGC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGTCAAAGATATTTCAGCATATATTATATTTGTTAAGATTCTTGC  596

seq1  CTGTATAAATTATCTGTTACATTCTAAGAGATTGGCCAAAATAAAGGATT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATAAATTATCTGTTACATTCTAAGAGATTGGCCAAAATAAAGGATT  646

seq1  CAAACCGTCAATGTATTTGAAAAGTTTCCCTTTTGGAAGAATTCTCCAGT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCGTCAATGTATTTGAAAAGTTTCCCTTTTGGAAGAATTCTCCAGT  696

seq1  GAATTTTAAGATGATATTTCTTGTTAAAGGATTATCTCATTCATTTCATT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTAAGATGATATTTCTTGTTAAAGGATTATCTCATTCATTTCATT  746

seq1  TATAATGTTGCTCTACTGTTTGAAATATCTGTTGATTTGTCAGACTGATG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGTTGCTCTACTGTTTGAAATATCTGTTGATTTGTCAGACTGATG  796

seq1  TTGTGGGTACTGCATTTATCACATACAAAATACTTGTAAGGTTTTTTTAA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGTACTGCATTTATCACATACAAAATACTTGTAAGGTTTTTTTAA  846

seq1  ATGTATAAATTATCTGATTAATTCTCAGTCTGCCTTTATTAGTAAAGCAT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATAAATTATCTGATTAATTCTCAGTCTGCCTTTATTAGTAAAGCAT  896

seq1  TTATCACATTCACTGCATTTTTGTAAGTTTTCTCTACTGTATGAATTCTC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACATTCACTGCATTTTTGTAAGTTTTCTCTACTGTATGAATTCTC  946

seq1  TGGTGCATTCTCAGACTAAGTTTGTGGGAAAATCATTTGTCACATTGACT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCATTCTCAGACTAAGTTTGTGGGAAAATCATTTGTCACATTGACT  996

seq1  GCATTTGTAAGGCTTCTTTAATGTATGATTTCTGTGATTATGAACAAGAT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGTAAGGCTTCTTTAATGTATGATTTCTGTGATTATGAACAAGAT  1046

seq1  AGGATTTCTGGGCAAAA  1056
      |||||||||||||||||
seq2  AGGATTTCTGGGCAAAA  1063