BAC Information

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BAC

Clone NameB6Ng01-243N21
Chromosome4 (Build37)
Map Location 132,792,055 - 132,934,679
singlet/doubletdoublet
Overlap geneFcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1
Upstream geneGmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2
Downstream gene4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243N21.bB6Ng01-243N21.g
ACCGA053141GA053142
length1,017986
definitionB6Ng01-243N21.b B6Ng01-243N21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,933,552 - 132,934,679)(132,792,055 - 132,792,796)
sequence
gaattcagagatcagtccagcctgataaccaaaaccagtcctgcatgctg
gatgggcttgggggaggaaatgaaatcagcaggattccagagaagagggg
cagcccactgatccaggccaacctaaaacttagttcagttaaaattagat
tagcccataagattaaaaatacccacatataatcacaggctgcctaaagt
atcagttgatgtttattggcatctaaagagacggtttggcccagtgcggt
gtgtgcagacaaccttggggagactcgtctgactcagacatttgcagagg
gagctagagccgcaggaggagcccacacggcgggcgggcgggcaggcggg
cgggatgactcaggagtaacccgggccctgcctgtgctgagcgagacttc
tctgcctagatcagaagaaaagcaggtggggggctgacaggagggaggag
cccggctgcaggctgagtgcaggctctccccagagggcatctggggcccc
tttgccctaggtcccagtcattcctgggtgtatgaatgctacctcttaga
tggctatttcttcaccgtggaccctggactgcgtcagttttccctaaacc
ctttttttaaaactgagcaagacagaagaatattcaaggctttcaaggct
ccagttcagaatgatgatgggaaaatggaagttctcaattgaaagggcct
tgaacatgacactagaagatcacaggctccaaagttggcctgagttaggt
ttgtttatcaccgtgcaagcaaagcacccaggaatctctcaactaggaat
ttaacaagaaacagctagaaaataaaaataaaaaacccactaatataatt
aaccaccagatcacacacaccagggatgggctgagaggtctgccttatct
acagccacaaggtcagagaagaccagagctggggttgggaaggtgggcaa
ggccccacgttcatctctacagcatatgatacaaacacctgaaatctcga
ggccagccctcctactt
gaattccaagtgagagggctgggccagcccaaacccctaccatctcagtc
tcctcttcctcccaggtatctgggaaggtcctgtagagtctgaagacttc
agcagtagctgcatctttgtttattatgctaccttctgcctcctcgggga
ggaggagcgctggaagagtgcatgctgggtaaattctcagagggcgctgc
aggtgagtggcttacagggggtcctggtgtaactttaattttttattttt
ttaaatcttatttttaatgatttcttttaatgttttaacccgtttttttg
taacccaccagaggtagtggaaaagaaagaaaacgggagaaatggaccta
tttagaaaggttttttggaacaacagatgtctgtgttatctggaaatcag
cagttcagttcacaggttagcaggcatcgatggcttgatccactagcaaa
cacctcacagacacaccagcaggccagttcagtacagtcgggttagcaac
ggtggtgacacgacctagtagagacagccaggcctcagccgcagcttcag
tcagcaagaacaacactgggagaagttctcaactgtgcctctctcaggaa
agccaagatcagcaaagactcaagacccacaagcggtgtgtagctagctc
tatacgcaaatctagctctgtctccatcactccgtggcgtcctatttata
ccctccaaacatcacgtgtcctccatatgccttgtcttgcctcagcacag
gcatccaatcagccccagtccttagaagcaacaaacaaactgcagcacac
aagagatttggtgtgtttctctttatggagttccgacaaaggcagttcaa
ctacacagtataaggcagaccaatacatgcacgttgttagcaaaaaaaat
ccttcatcacgtgacttttcacatgcttgctttagcagaacatctctctc
ctgtgtctgcttcagcgaaacgtttctcctcgagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_132933552_132934679
seq2: B6Ng01-243N21.b_45_1061 (reverse)

seq1  AAGTAGGAGTGTTCTTTTTGTCAGCGTGTGGGAGGCTCTCCTCCACCCCA  50
                                                        
seq2  --------------------------------------------------  0

seq1  ACCCGAGGAGAGGGGAAGGAGAGAAGCAACTGTCAGTGGGAACTCCGAGG  100
                                                        
seq2  --------------------------------------------------  0

seq1  AAGCAAGGAGAGTGAGGAGGGCTGACCTC-AGATCTCAGGTGTTCTGCTT  149
                ||| |||||||||| |||| |||| ||||||||| ||  |
seq2  ---------AAGT-AGGAGGGCTGGCCTCGAGATTTCAGGTGTT-TGTAT  39

seq1  CTTTTGCTGTGGGGATTGAACCTGGGGCCTTGCCCACC-TCCCACCCCCA  198
      | | |||||| | || ||||| |||||||||||||||| ||||| |||||
seq2  CATATGCTGTAGAGA-TGAACGTGGGGCCTTGCCCACCTTCCCAACCCCA  88

seq1  GCTCTGGTCTTCTCTGACCTTGTGGCTGTAGATAAGGCAGACCTCTCAGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGTCTTCTCTGACCTTGTGGCTGTAGATAAGGCAGACCTCTCAGC  138

seq1  CCATCCCCTGGTGTGTGTGATCTGGTGGTTAATTATATTAGTGGGTTTTT  298
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAT-CCCTGGTGTGTGTGATCTGGTGGTTAATTATATTAGTGGGTTTTT  187

seq1  TATTTTTATTTTCTAGCTGTTTCTTGTTAAATTCCTAGTTGAGAGATTCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTATTTTCTAGCTGTTTCTTGTTAAATTCCTAGTTGAGAGATTCC  237

seq1  TGGGTGCTTTGCTTGCACGGTGATAAACAAACCTAACTCAGGCCAACTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGCTTTGCTTGCACGGTGATAAACAAACCTAACTCAGGCCAACTTT  287

seq1  GGAGCCTGTGATCTTCTAGTGTCATGTTCAAGGCCCTTTCAATTGAGAAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTGTGATCTTCTAGTGTCATGTTCAAGGCCCTTTCAATTGAGAAC  337

seq1  TTCCATTTTCCCATCATCATTCTGAACTGGAGCCTTGAAAGCCTTGAATA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTTTCCCATCATCATTCTGAACTGGAGCCTTGAAAGCCTTGAATA  387

seq1  TTCTTCTGTCTTGCTCAGTTTTAAAAAAAGGGTTTAGGGAAAACTGACGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTGTCTTGCTCAGTTTTAAAAAAAGGGTTTAGGGAAAACTGACGC  437

seq1  AGTCCAGGGTCCACGGTGAAGAAATAGCCATCTAAGAGGTAGCATTCATA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGGGTCCACGGTGAAGAAATAGCCATCTAAGAGGTAGCATTCATA  487

seq1  CACCCAGGAATGACTGGGACCTAGGGCAAAGGGGCCCCAGATGCCCTCTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGGAATGACTGGGACCTAGGGCAAAGGGGCCCCAGATGCCCTCTG  537

seq1  GGGAGAGCCTGCACTCAGCCTGCAGCCGGGCTCCTCCCTCCTGTCAGCCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGCCTGCACTCAGCCTGCAGCCGGGCTCCTCCCTCCTGTCAGCCC  587

seq1  CCCACCTGCTTTTCTTCTGATCTAGGCAGAGAAGTCTCGCTCAGCACAGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTGCTTTTCTTCTGATCTAGGCAGAGAAGTCTCGCTCAGCACAGG  637

seq1  CAGGGCCCGGGTTACTCCTGAGTCATCCCGCCCGCCTGCCCGCCCGCCCG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCCGGGTTACTCCTGAGTCATCCCGCCCGCCTGCCCGCCCGCCCG  687

seq1  CCGTGTGGGCTCCTCCTGCGGCTCTAGCTCCCTCTGCAAATGTCTGAGTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGTGGGCTCCTCCTGCGGCTCTAGCTCCCTCTGCAAATGTCTGAGTC  737

seq1  AGACGAGTCTCCCCAAGGTTGTCTGCACACACCGCACTGGGCCAAACCGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGAGTCTCCCCAAGGTTGTCTGCACACACCGCACTGGGCCAAACCGT  787

seq1  CTCTTTAGATGCCAATAAACATCAACTGATACTTTAGGCAGCCTGTGATT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTAGATGCCAATAAACATCAACTGATACTTTAGGCAGCCTGTGATT  837

seq1  ATATGTGGGTATTTTTAATCTTATGGGCTAATCTAATTTTAACTGAACTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGGGTATTTTTAATCTTATGGGCTAATCTAATTTTAACTGAACTA  887

seq1  AGTTTTAGGTTGGCCTGGATCAGTGGGCTGCCCCTCTTCTCTGGAATCCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAGGTTGGCCTGGATCAGTGGGCTGCCCCTCTTCTCTGGAATCCT  937

seq1  GCTGATTTCATTTCCTCCCCCAAGCCCATCCAGCATGCAGGACTGGTTTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATTTCATTTCCTCCCCCAAGCCCATCCAGCATGCAGGACTGGTTTT  987

seq1  GGTTATCAGGCTGGACTGATCTCTGAATTC  1128
      ||||||||||||||||||||||||||||||
seq2  GGTTATCAGGCTGGACTGATCTCTGAATTC  1017

seq1: chr4_132792055_132792796
seq2: B6Ng01-243N21.g_64_805

seq1  GAATTCCAAGTGAGAGGGCTGGGCCAGCCCAAACCCCTACCATCTCAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTGAGAGGGCTGGGCCAGCCCAAACCCCTACCATCTCAGTC  50

seq1  TCCTCTTCCTCCCAGGTATCTGGGAAGGTCCTGTAGAGTCTGAAGACTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTCCTCCCAGGTATCTGGGAAGGTCCTGTAGAGTCTGAAGACTTC  100

seq1  AGCAGTAGCTGCATCTTTGTTTATTATGCTACCTTCTGCCTCCTCGGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTAGCTGCATCTTTGTTTATTATGCTACCTTCTGCCTCCTCGGGGA  150

seq1  GGAGGAGCGCTGGAAGAGTGCATGCTGGGTAAATTCTCAGAGGGCGCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGCGCTGGAAGAGTGCATGCTGGGTAAATTCTCAGAGGGCGCTGC  200

seq1  AGGTGAGTGGCTTACAGGGGGTCCTGGTGTAACTTTAATTTTTTATTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGTGGCTTACAGGGGGTCCTGGTGTAACTTTAATTTTTTATTTTT  250

seq1  TTAAATCTTATTTTTAATGATTTCTTTTAATGTTTTAACCCGTTTTTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCTTATTTTTAATGATTTCTTTTAATGTTTTAACCCGTTTTTTTG  300

seq1  TAACCCACCAGAGGTAGTGGAAAAGAAAGAAAACGGGAGAAATGGACCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCACCAGAGGTAGTGGAAAAGAAAGAAAACGGGAGAAATGGACCTA  350

seq1  TTTAGAAAGGTTTTTTGGAACAACAGATGTCTGTGTTATCTGGAAATCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAAGGTTTTTTGGAACAACAGATGTCTGTGTTATCTGGAAATCAG  400

seq1  CAGTTCAGTTCACAGGTTAGCAGGCATCGATGGCTTGATCCACTAGCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCAGTTCACAGGTTAGCAGGCATCGATGGCTTGATCCACTAGCAAA  450

seq1  CACCTCACAGACACACCAGCAGGCCAGTTCAGTACAGTCGGGTTAGCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCACAGACACACCAGCAGGCCAGTTCAGTACAGTCGGGTTAGCAAC  500

seq1  GGTGGTGACACGACCTAGTAGAGACAGCCAGGCCTCAGCCGCAGCTTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGACACGACCTAGTAGAGACAGCCAGGCCTCAGCCGCAGCTTCAG  550

seq1  TCAGCAAGAACAACACTGGGAGAAGTTCTCAACTGTGCCTCTCTCAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAAGAACAACACTGGGAGAAGTTCTCAACTGTGCCTCTCTCAGGAA  600

seq1  AGCCAAGATCAGCAAAGACTCAAGACCCACAAGCGGTGTGTAGCTAGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGATCAGCAAAGACTCAAGACCCACAAGCGGTGTGTAGCTAGCTC  650

seq1  TATACGCAAATCTAGCTCTGTCTCCATCACTCCGTGGCGTCCTATTTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACGCAAATCTAGCTCTGTCTCCATCACTCCGTGGCGTCCTATTTATA  700

seq1  CCCTCCAAACATCACGTGTCCTCCATATGCCTTGTCTTGCCT  742
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCAAACATCACGTGTCCTCCATATGCCTTGTCTTGCCT  742