BAC Information

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BAC

Clone NameB6Ng01-244K13
Chromosome4 (Build37)
Map Location 79,841,569 - 79,973,509
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040036, LOC667922
Downstream geneTyrp1, D4Bwg0951e, Mpdz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244K13.bB6Ng01-244K13.g
ACCGA053738GA053739
length1,0491,102
definitionB6Ng01-244K13.b B6Ng01-244K13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,972,452 - 79,973,509)(79,841,569 - 79,842,670)
sequence
gaattcattctgtctaatatacaagtcacccaaatagtttagatgggtat
cttctttactaaatagaaaactagttaaaagtagaaatgatgatatttat
ttttgtattattaacagcagctggaaatgttgccgacttgctacgctctg
aattaataaaataaatatattaaactgaaattttaaatttaatctcttct
tgaaatatactaaaacaatcagaaattggtgattgttcatttccatgtag
tatattctgtataataaataaataatacagtatttataacatgccttatt
ggtctaaattttaaaatttagaaattgtacaggagagaattaaaccaata
tcctattagaaagcagaaattaagagactttttgcagtataaatatcaat
aaaattcttacgaaccaaataaagggcaatgtgataagagacagtgatgt
attttaaactgagatgattattgactggggaccttttgacaaaaattatc
ctatgatatttggaaaagctgacatagattctagctataagaagcttgtg
attaaagcataaataataatgaaaactcatatccaaaaatatttctcaaa
ataaatgcttgggtacagagagtacatgtaaccttccttatattacaaga
taaaaatggaattaaatatatacaagcatggatatacattttaaagttat
tatagttcataaaactatattgtgtgttgtagttgattttcaatgcttta
tctttgcttgttttcctcattagttttctgttaatgtgtggtattactta
ataagtaagtgatctcaacttatttttagtaagtttcttcatctcatttt
tcatggtgctaaattgcatgttaagaaagaatctacaaattagtatttat
agaagacaattctttgtgattagttttctgcactgctgcaactttttagc
agcacgtagagtgaccttcccttccagtggatgttaattctgatcttttc
tatatttttcatctgcttgtcttgctgaaacagatagtcgagtgtgggg

gaattcatcatttttatatgattatttaaaaagaaaaggtgagcataaat
tttactaaaatattgtgtattgaaaaataaaatgacaatcatttttatgt
tatgtgtcagaaactagaaaaacagaagattatattaacaactccacgat
ctgctaaggtgtttattttgtagcttagtgataaattaatttttcagaaa
atgtacaacccaggttaatttcctagaacaatattttatagttggaaagg
atcagttagtgctttgataaatgaagatgagaaaaaagatcagtagaaag
cagatgaagagcatatgtgtttaaattaatataaaaagtcttcaacacat
ttttaaggtgactaggaaaaaacgtcaatggaaatctgagaaactggcat
ttaaaaacgaagttctgcaggaaggacagggggtgtgtggtgtggggagc
ttgctggcaaacagcccgaagcttagctgtggctgcagaatgttacagac
tagggacactgtcattcacacagcctgaaatggagctaggtacaatcgag
ccaaacaagacatccatcatggtttcgatacccttagaaatgtactgtga
gttacatctgcttaaagctgcaaagataaaatgtttaacagccccaggta
gtaatactgccatatgtgaaatggttgggcaaagacttcactgcacagag
aatcaagatcttgcaactcatgtaaatgatgaaaaagaaaagggcaaaga
agtttaagagcatacacaggagaatgtggacagaattcaggatactgcat
tagaaaatgggaagcgttgtcctctgataaaccatgaatactccatggaa
agagcttagaggacaatgttcagtaagtccaaaaggcccagtgccagaaa
aatctttgtctttctcatactacccactcaacttagccttctaagggagg
agttattatttaataacagagacatgtgacaggaatgatgatttctatag
ccatataccatgctaagacatcagaagactcctacatgaaagtaaattaa
gaattataaatggaattaattttacttacacttggctttttgttaatctt
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_79972452_79973509
seq2: B6Ng01-244K13.b_45_1093 (reverse)

seq1  CCCCACACTCGACTATCTGTTTCCAGCAAAGACAAGCAGAATGAAAAATT  50
      |||||||||||||||||||||| |||| ||||||||||| |||||||| |
seq2  CCCCACACTCGACTATCTGTTT-CAGC-AAGACAAGCAG-ATGAAAAA-T  46

seq1  ATAGAAAAGATTCCAAGAATTAACATCCACTGGAAGGGAAGGTCACTTCT  100
      |||||||||||    ||||||||||||||||||||||||||||||| |||
seq2  ATAGAAAAGAT---CAGAATTAACATCCACTGGAAGGGAAGGTCAC-TCT  92

seq1  ACGTGCTGCTAAAAAGTTGCAGCAGTTGCAGAAAACTAATCACAAAGAAT  150
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACGTGCTGCTAAAAAGTTGCAGCAG-TGCAGAAAACTAATCACAAAGAAT  141

seq1  TGTCTTCTATAAATACTAATTTGTAGATTCTTTCTTAACATGCAATTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTATAAATACTAATTTGTAGATTCTTTCTTAACATGCAATTTAG  191

seq1  CACCATGAAAAATGAGATGAAGAAACTTACTAAAAATAAGTTGAGATCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGAAAAATGAGATGAAGAAACTTACTAAAAATAAGTTGAGATCAC  241

seq1  TTACTTATTAAGTAATACCACACATTAACAGAAAACTAATGAGGAAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTATTAAGTAATACCACACATTAACAGAAAACTAATGAGGAAAACA  291

seq1  AGCAAAGATAAAGCATTGAAAATCAACTACAACACACAATATAGTTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGATAAAGCATTGAAAATCAACTACAACACACAATATAGTTTTAT  341

seq1  GAACTATAATAACTTTAAAATGTATATCCATGCTTGTATATATTTAATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTATAATAACTTTAAAATGTATATCCATGCTTGTATATATTTAATTC  391

seq1  CATTTTTATCTTGTAATATAAGGAAGGTTACATGTACTCTCTGTACCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTATCTTGTAATATAAGGAAGGTTACATGTACTCTCTGTACCCAA  441

seq1  GCATTTATTTTGAGAAATATTTTTGGATATGAGTTTTCATTATTATTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTATTTTGAGAAATATTTTTGGATATGAGTTTTCATTATTATTTAT  491

seq1  GCTTTAATCACAAGCTTCTTATAGCTAGAATCTATGTCAGCTTTTCCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAATCACAAGCTTCTTATAGCTAGAATCTATGTCAGCTTTTCCAAA  541

seq1  TATCATAGGATAATTTTTGTCAAAAGGTCCCCAGTCAATAATCATCTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATAGGATAATTTTTGTCAAAAGGTCCCCAGTCAATAATCATCTCAG  591

seq1  TTTAAAATACATCACTGTCTCTTATCACATTGCCCTTTATTTGGTTCGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATACATCACTGTCTCTTATCACATTGCCCTTTATTTGGTTCGTA  641

seq1  AGAATTTTATTGATATTTATACTGCAAAAAGTCTCTTAATTTCTGCTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTTATTGATATTTATACTGCAAAAAGTCTCTTAATTTCTGCTTTC  691

seq1  TAATAGGATATTGGTTTAATTCTCTCCTGTACAATTTCTAAATTTTAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGGATATTGGTTTAATTCTCTCCTGTACAATTTCTAAATTTTAAAA  741

seq1  TTTAGACCAATAAGGCATGTTATAAATACTGTATTATTTATTTATTATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGACCAATAAGGCATGTTATAAATACTGTATTATTTATTTATTATAC  791

seq1  AGAATATACTACATGGAAATGAACAATCACCAATTTCTGATTGTTTTAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATACTACATGGAAATGAACAATCACCAATTTCTGATTGTTTTAGT  841

seq1  ATATTTCAAGAAGAGATTAAATTTAAAATTTCAGTTTAATATATTTATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCAAGAAGAGATTAAATTTAAAATTTCAGTTTAATATATTTATTT  891

seq1  TATTAATTCAGAGCGTAGCAAGTCGGCAACATTTCCAGCTGCTGTTAATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATTCAGAGCGTAGCAAGTCGGCAACATTTCCAGCTGCTGTTAATA  941

seq1  ATACAAAAATAAATATCATCATTTCTACTTTTAACTAGTTTTCTATTTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAAATAAATATCATCATTTCTACTTTTAACTAGTTTTCTATTTAG  991

seq1  TAAAGAAGATACCCATCTAAACTATTTGGGTGACTTGTATATTAGACAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAGATACCCATCTAAACTATTTGGGTGACTTGTATATTAGACAGA  1041

seq1  ATGAATTC  1058
      ||||||||
seq2  ATGAATTC  1049


seq1: chr4_79841569_79842670
seq2: B6Ng01-244K13.g_65_1166

seq1  GAATTCATCATTTTTATATGATTATTTAAAAAGAAAAGGTGAGCATAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCATTTTTATATGATTATTTAAAAAGAAAAGGTGAGCATAAAT  50

seq1  TTTACTAAAATATTGTGTATTGAAAAATAAAATGACAATCATTTTTATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTAAAATATTGTGTATTGAAAAATAAAATGACAATCATTTTTATGT  100

seq1  TATGTGTCAGAAACTAGAAAAACAGAAGATTATATTAACAACTCCACGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTCAGAAACTAGAAAAACAGAAGATTATATTAACAACTCCACGAT  150

seq1  CTGCTAAGGTGTTTATTTTGTAGCTTAGTGATAAATTAATTTTTCAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAAGGTGTTTATTTTGTAGCTTAGTGATAAATTAATTTTTCAGAAA  200

seq1  ATGTACAACCCAGGTTAATTTCCTAGAACAATATTTTATAGTTGGAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACAACCCAGGTTAATTTCCTAGAACAATATTTTATAGTTGGAAAGG  250

seq1  ATCAGTTAGTGCTTTGATAAATGAAGATGAGAAAAAAGATCAGTAGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTTAGTGCTTTGATAAATGAAGATGAGAAAAAAGATCAGTAGAAAG  300

seq1  CAGATGAAGAGCATATGTGTTTAAATTAATATAAAAAGTCTTCAACACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGAAGAGCATATGTGTTTAAATTAATATAAAAAGTCTTCAACACAT  350

seq1  TTTTAAGGTGACTAGGAAAAAACGTCAATGGAAATCTGAGAAACTGGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGGTGACTAGGAAAAAACGTCAATGGAAATCTGAGAAACTGGCAT  400

seq1  TTAAAAACGAAGTTCTGCAGGAAGGACAGGGGGTGTGTGGTGTGGGGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAACGAAGTTCTGCAGGAAGGACAGGGGGTGTGTGGTGTGGGGAGC  450

seq1  TTGCTGGCAAACAGCCCGAAGCTTAGCTGTGGCTGCAGAATGTTACAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGCAAACAGCCCGAAGCTTAGCTGTGGCTGCAGAATGTTACAGAC  500

seq1  TAGGGACACTGTCATTCACACAGCCTGAAATGGAGCTAGGTACAATCGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGACACTGTCATTCACACAGCCTGAAATGGAGCTAGGTACAATCGAG  550

seq1  CCAAACAAGACATCCATCATGGTTTCGATACCCTTAGAAATGTACTGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACAAGACATCCATCATGGTTTCGATACCCTTAGAAATGTACTGTGA  600

seq1  GTTACATCTGCTTAAAGCTGCAAAGATAAAATGTTTAACAGCCCCAGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACATCTGCTTAAAGCTGCAAAGATAAAATGTTTAACAGCCCCAGGTA  650

seq1  GTAATACTGCCATATGTGAAATGGTTGGGCAAAGACTTCACTGCACAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATACTGCCATATGTGAAATGGTTGGGCAAAGACTTCACTGCACAGAG  700

seq1  AATCAAGATCTTGCAACTCATGTAAATGATGAAAAAGAAAAGGGCAAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGATCTTGCAACTCATGTAAATGATGAAAAAGAAAAGGGCAAAGA  750

seq1  AGTTTAAGAGCATACACAGGAGAATGTGGACAGAATTCAGGATACTGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAGAGCATACACAGGAGAATGTGGACAGAATTCAGGATACTGCAT  800

seq1  TAGAAAATGGGAAGCGTTGTCCTCTGATAAACCATGAATACTCCATGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAATGGGAAGCGTTGTCCTCTGATAAACCATGAATACTCCATGGAA  850

seq1  AGAGCTTAGAGGACAATG-TCAGTAAGTCCAAAAGGCCCAGTGCCAG-AA  898
      |||||||||||||||||| |||||||||||||||||||||||||||| ||
seq2  AGAGCTTAGAGGACAATGTTCAGTAAGTCCAAAAGGCCCAGTGCCAGAAA  900

seq1  AATC-TTGTCTTTCTCATACTACCCACTCAACTTAGCCTTCTAAGG--AG  945
      |||| |||||||||||||||||||||||||||||||||||||||||   |
seq2  AATCTTTGTCTTTCTCATACTACCCACTCAACTTAGCCTTCTAAGGGAGG  950

seq1  AG-TATTAATTAATAACAAGAGACATGTGACAGGAATGATGATTTCTATA  994
      || ||||| |||||||| ||||||||||||||||||||||||||||||||
seq2  AGTTATTATTTAATAAC-AGAGACATGTGACAGGAATGATGATTTCTATA  999

seq1  AGCATATACCATGCTAAGACATCAGAAGACTCCTTACATGAAAGTAAATT  1044
        ||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCCATATACCATGCTAAGACATCAGAAGACTCC-TACATGAAAGTAAATT  1048

seq1  AAGGAATTATTAAATGAATTAATTTTTAACTTACACTTGGCTTTTTTGTT  1094
      || ||||||| ||  |||||||||||  ||||||||||||| ||||||||
seq2  AA-GAATTATAAATGGAATTAATTTT--ACTTACACTTGGC-TTTTTGTT  1094

seq1  ATTCTTTG  1102
      | ||||||
seq2  AATCTTTG  1102


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