BAC Information

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BAC

Clone NameB6Ng01-247A20
Chromosome4 (Build37)
Map Location 86,340,926 - 86,479,611
singlet/doubletdoublet
Overlap geneEG624685, Dennd4c
Upstream geneA930009N24, LOC668052, Adamtsl1, 4930500O09Rik, Rraga, 6230416J20Rik, LOC100040388, Adfp
Downstream geneRps6, Asah3l, Slc24a2, Mllt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247A20.bB6Ng01-247A20.g
ACCGA055495GA055496
length9721,107
definitionB6Ng01-247A20.b B6Ng01-247A20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,340,926 - 86,341,581)(86,478,507 - 86,479,611)
sequence
gaattcaacagagatctgcatctggttcctgagtgctgagatttaaaagt
gtgcaccaccacacctggctctctttctactctgcactgtctactctttc
ctcctcccctgcccttcaacacagatacgtaattgcttgggattcaaccc
agcacctttgggctagagaggcggctttgaagttgagagcatttggcgtt
cttgcagaggacctgaattcaccttctagtaccaacatgggctaactcat
aaccaccgttaactccatccaagggatatggcgccctcttctggcttcca
tgtacacttagacacacacaaacatgtaaacacatatacacaggtaaata
tataaataaggatgtagaaacctatggatttatctggaggatatcatcct
gagtgaggtaacccaatcacaaaagaagtcacttgatacgcactcactga
taagtgtatattagcccagaaacctagaatacccaagatacaatttgcaa
aacacaagaaaatcaagaccaaggcgtggatatttcatttctccctagga
tagggaataaaatacccatggaaggagttacagagacaaagtttggagct
aagacgaaaggatgaaccatccagagactgccccacctgggggtccatcc
cataatcagccaccaaacactattacatatgccagcaagattttgctgaa
aggaccctgaaatagctgtctcctgtgaggctatgccagtgcctggcaaa
tacagaagtggatgctcacagtcatctataggatgaaacacagggccccc
aatggaggagctagagaaagtacccaaaggagctaaaggggtctgcaacc
ctataggtggaacaacaatatgaactacccagtacccccagagctcatgt
ctctagctgcatatgtagcagagatggcctactcggccatcagtgggaag
agaggccccttgggtcttgcaa

gaattctgcaggatctcatctcaacctttggggtttcacctacagtcaca
tcttcagaaacaaacaaacaaacaaacaaacatacatgagggaagcagga
gaccccaaggcacatggtgtgaatacagaagtttggtaaggtggtctgaa
gcagagcagtccccagcattgtgaaccccaacattagcagggaggagcta
agtggatcacaggtaaaaatgggtgggagcaccctctaactcaggaagaa
acactgaatgagaatgtaatccctatttcagtttattgaacataatacct
gcttcagtttactgctcatttgtatttgaatattttaatatccatttttg
gtctctatttttatatatatcctttaattttttctcctcttagcatgaac
acttttgtattttaggtgttcaactgatacgttatactcgtattcttgta
tcattttggaaaagctcttatgtctggcaaagttaccaaaaggataagag
aatcgttaccctgaaaaaaaagagtaaaatatataaagaaaaattcagca
aggaagcatagacactaaaaagaaatccaacacaaatactatatatgaca
gagtaaatcaagcaccacagcagaaagcatcaccagacaacactgagcat
gaaaagaatcaggaagaggacaaagctgagacaatgcatatacagggaaa
gacaaaaactcatgaacaaaacttccagaaagttgggtacacatgagaga
ccaaacttaagaattcataaagtagagggctggagggatagctcagtggt
tgagagcactgactgttcttctagaggtcctgagctcaattcccagtggc
cacatggtggctcacaaccatctgtggtgggatgccctcttctggtgtgt
gaagggagcaacatacctaaaataaataaatcttaaaaaaaaaaaccaaa
actcataaaataaaaagagcttgataaaaacaaacaaaccacaaagcaaa
gtaacaatactaaagcttataaaagaaaaccactaaattgaaagagaaac
atcagaattgacatcaggatttgtcacagcacccctaaaggtcaggaaag
cacagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_86340926_86341581
seq2: B6Ng01-247A20.b_46_701

seq1  GAATTCAACAGAGATCTGCATCTGGTTCCTGAGTGCTGAGATTTAAAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAGAGATCTGCATCTGGTTCCTGAGTGCTGAGATTTAAAAGT  50

seq1  GTGCACCACCACACCTGGCTCTCTTTCTACTCTGCACTGTCTACTCTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACCACCACACCTGGCTCTCTTTCTACTCTGCACTGTCTACTCTTTC  100

seq1  CTCCTCCCCTGCCCTTCAACACAGATACGTAATTGCTTGGGATTCAACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCCCTGCCCTTCAACACAGATACGTAATTGCTTGGGATTCAACCC  150

seq1  AGCACCTTTGGGCTAGAGAGGCGGCTTTGAAGTTGAGAGCATTTGGCGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCTTTGGGCTAGAGAGGCGGCTTTGAAGTTGAGAGCATTTGGCGTT  200

seq1  CTTGCAGAGGACCTGAATTCACCTTCTAGTACCAACATGGGCTAACTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGAGGACCTGAATTCACCTTCTAGTACCAACATGGGCTAACTCAT  250

seq1  AACCACCGTTAACTCCATCCAAGGGATATGGCGCCCTCTTCTGGCTTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCGTTAACTCCATCCAAGGGATATGGCGCCCTCTTCTGGCTTCCA  300

seq1  TGTACACTTAGACACACACAAACATGTAAACACATATACACAGGTAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACTTAGACACACACAAACATGTAAACACATATACACAGGTAAATA  350

seq1  TATAAATAAGGATGTAGAAACCTATGGATTTATCTGGAGGATATCATCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATAAGGATGTAGAAACCTATGGATTTATCTGGAGGATATCATCCT  400

seq1  GAGTGAGGTAACCCAATCACAAAAGAAGTCACTTGATACGCACTCACTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGGTAACCCAATCACAAAAGAAGTCACTTGATACGCACTCACTGA  450

seq1  TAAGTGTATATTAGCCCAGAAACCTAGAATACCCAAGATACAATTTGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTATATTAGCCCAGAAACCTAGAATACCCAAGATACAATTTGCAA  500

seq1  AACACAAGAAAATCAAGACCAAGGCGTGGATATTTCATTTCTCCCTAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAGAAAATCAAGACCAAGGCGTGGATATTTCATTTCTCCCTAGGA  550

seq1  TAGGGAATAAAATACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAATAAAATACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCT  600

seq1  AAGACGAAAGGATGAACCATCCAGAGACTGCCCCACCTGGGGGTCCATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACGAAAGGATGAACCATCCAGAGACTGCCCCACCTGGGGGTCCATCC  650

seq1  CATAAT  656
      ||||||
seq2  CATAAT  656


seq1: chr4_86478507_86479611
seq2: B6Ng01-247A20.g_71_1177 (reverse)

seq1  TTCTGTGCTTTCCTGACTTTTAGGGGTGCTGGTGACAAAT-CTGATGTC-  48
      ||||||||||||||||| |||||||||||| ||||||||| |||||||| 
seq2  TTCTGTGCTTTCCTGACCTTTAGGGGTGCT-GTGACAAATCCTGATGTCA  49

seq1  ATTCTGATGTTTCTCTTTCAA-TTAGT-GTTTTCTTTTATAGCTTTTAGT  96
      ||||||||||||||||||||| ||||| |||||||||||||   ||||||
seq2  ATTCTGATGTTTCTCTTTCAATTTAGTGGTTTTCTTTTATAAGCTTTAGT  99

seq1  ATTGTTACTTTGCTTTGTGGTTTGTTTGTTTTTATCAAGCTCCTTTTTAT  146
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATTGTTACTTTGCTTTGTGGTTTGTTTGTTTTTATCAAGCT-CTTTTTAT  148

seq1  TTTATGAGTTTTGGTTTTTTTTTTTAAGATTTATTTATTTTAGGTATGTT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAGTTTTGGTTTTTTTTTTTAAGATTTATTTATTTTAGGTATGTT  198

seq1  GCTCCCTTCACACACCAGAAGAGGGCATCCCACCACAGATGGTTGTGAGC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCTTCACACACCAGAAGAGGGCATCCCACCACAGATGGTTGTGAGC  248

seq1  CACCATGTGGCCACTGGGAATTGAGCTCAGGACCTCTAGAAGAACAGTCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGTGGCCACTGGGAATTGAGCTCAGGACCTCTAGAAGAACAGTCA  298

seq1  GTGCTCTCAACCACTGAGCTATCCCTCCAGCCCTCTACTTTATGAATTCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTCAACCACTGAGCTATCCCTCCAGCCCTCTACTTTATGAATTCT  348

seq1  TAAGTTTGGTCTCTCATGTGTACCCAACTTTCTGGAAGTTTTGTTCATGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTGGTCTCTCATGTGTACCCAACTTTCTGGAAGTTTTGTTCATGA  398

seq1  GTTTTTGTCTTTCCCTGTATATGCATTGTCTCAGCTTTGTCCTCTTCCTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTCTTTCCCTGTATATGCATTGTCTCAGCTTTGTCCTCTTCCTG  448

seq1  ATTCTTTTCATGCTCAGTGTTGTCTGGTGATGCTTTCTGCTGTGGTGCTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTCATGCTCAGTGTTGTCTGGTGATGCTTTCTGCTGTGGTGCTT  498

seq1  GATTTACTCTGTCATATATAGTATTTGTGTTGGATTTCTTTTTAGTGTCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTACTCTGTCATATATAGTATTTGTGTTGGATTTCTTTTTAGTGTCT  548

seq1  ATGCTTCCTTGCTGAATTTTTCTTTATATATTTTACTCTTTTTTTTCAGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCCTTGCTGAATTTTTCTTTATATATTTTACTCTTTTTTTTCAGG  598

seq1  GTAACGATTCTCTTATCCTTTTGGTAACTTTGCCAGACATAAGAGCTTTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACGATTCTCTTATCCTTTTGGTAACTTTGCCAGACATAAGAGCTTTT  648

seq1  CCAAAATGATACAAGAATACGAGTATAACGTATCAGTTGAACACCTAAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATGATACAAGAATACGAGTATAACGTATCAGTTGAACACCTAAAA  698

seq1  TACAAAAGTGTTCATGCTAAGAGGAGAAAAAATTAAAGGATATATATAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAGTGTTCATGCTAAGAGGAGAAAAAATTAAAGGATATATATAAA  748

seq1  AATAGAGACCAAAAATGGATATTAAAATATTCAAATACAAATGAGCAGTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGACCAAAAATGGATATTAAAATATTCAAATACAAATGAGCAGTA  798

seq1  AACTGAAGCAGGTATTATGTTCAATAAACTGAAATAGGGATTACATTCTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAGCAGGTATTATGTTCAATAAACTGAAATAGGGATTACATTCTC  848

seq1  ATTCAGTGTTTCTTCCTGAGTTAGAGGGTGCTCCCACCCATTTTTACCTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTGTTTCTTCCTGAGTTAGAGGGTGCTCCCACCCATTTTTACCTG  898

seq1  TGATCCACTTAGCTCCTCCCTGCTAATGTTGGGGTTCACAATGCTGGGGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCACTTAGCTCCTCCCTGCTAATGTTGGGGTTCACAATGCTGGGGA  948

seq1  CTGCTCTGCTTCAGACCACCTTACCAAACTTCTGTATTCACACCATGTGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTGCTTCAGACCACCTTACCAAACTTCTGTATTCACACCATGTGC  998

seq1  CTTGGGGTCTCCTGCTTCCCTCATGTATGTTTGTTTGTTTGTTTGTTTGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGGTCTCCTGCTTCCCTCATGTATGTTTGTTTGTTTGTTTGTTTGT  1048

seq1  TTCTGAAGATGTGACTGTAGGTGAAACCCCAAAGGTTGAGATGAGATCCT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGATGTGACTGTAGGTGAAACCCCAAAGGTTGAGATGAGATCCT  1098

seq1  GCAGAATTC  1105
      |||||||||
seq2  GCAGAATTC  1107


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