BAC Information

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BAC

Clone NameB6Ng01-249B01
Chromosome4 (Build37)
Map Location 58,484,347 - 58,627,543
singlet/doubletdoublet
Overlap geneEdg2, LOC675306
Upstream geneLOC667049, Palm2, LOC100041513, Akap2, D630039A03Rik, Txn1, Txndc8, Svep1, Musk
Downstream geneLOC433711, Olfr267, AI314180, LOC100041581, Ltb4dh, 2010203O07Rik, Gng10, AI481877, LOC433712, Ugcg, LOC100041535, LOC634731, LOC666719, Rod1, Hsdl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249B01.bB6Ng01-249B01.g
ACCGA056981GA056982
length1,0871,123
definitionB6Ng01-249B01.b B6Ng01-249B01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,484,347 - 58,485,419)(58,626,416 - 58,627,543)
sequence
gaattcacacttgccacataaagagaagctttctgaagcacagaaacgcc
catttagaatgaactcatggaaaccctacttaaaatgcagtgttccttat
gtcaacaaaagtctacttaggcaggataaataggtgaagccatgaatttc
cagtctcctgatgccaaattcaatcccacttcttcaaaaagaccctgtta
ttgctgcgtcaccctgtgagaacttcatatttgctttggatcactctgat
atgtcctctattgatgaaggagatgtgccagggtttaagtaaggctgtga
ccacattcagtctagactctatcatcttcgagcaaatacatgaataaaaa
gcctctcagaggcacaggctgtagtttagaccacaaagagaaactaccaa
agttgtaagaaaaacaagaaaacaactttactagcttagcatggcagctc
tcaggcagaagcaggacagtcatgagttcaaggtcaacctgcactacatg
gcaaattccaagccactttgaattgtggcataagaccctatctcaaaaga
gtaaaaaaataagtctttgtttatggggaaaaaatgtagtttaaatgctt
ctttacatatagtaggacaaagaatatgtaaaagaagacaataattccat
tttgacctggaagtgtgcaaaattatttgtttaccagcaggtgaatgctt
aatttctaagaagcaatcataaagtttttaattagaaaagatcatttatt
tatttccagaaaacatcaaataaaaaggagaaatagtaataagtatatta
gttattttttctgtggctatgataaaataccatgaccaaagcaactcacg
gaagaaagtttatttttgttttatagatgcagacgaaagggttcataaag
ggcaggttgaagcaagaagctgagaactcatgtcttcaaccaaaagctca
aagcaaagatcaactacatgcatgtattctctgtttctgttattttgtaa
gggtatgaaaatcttgaaaggcccacttcccagtgacttcgttcttctcc
agcaagttttgcaccatttccccagacagcacctacc
gaattccatgattggcatctgtgtgcaaggtaacgaagattggtgggaac
acagcccagaactgagggcggcatttcatgatgtcaggaaatgaacagct
aagtgaagagcgtggaaatcccacacaagggtgtctgtatgtcacaggag
ccataagctggcatccaggagtctcacaggggtagagggcctgagaagag
atgtacgtaggattgctgagatcatgagagttaagatgaggactagaact
cctgccctgtatgcccttgatagcagcagcctttggccaaagtctatgga
ctggcattaaagagaagcaccctaggcaaggatggagagaaaggcaaggc
tcggatgaatacaagtaggtaaaacaggacacagactgaggtctccagct
caaaaggtgctgtgacccacctctgggtgttaacgctttccttaaaaacc
aattacttcctgaatgaagaggtaaatccagggcgttgtgaatttagagg
ctttaaactcacaaaagggctgcacttaggtttccaccttggtggaactt
gattaaggaaaggaatttttccttctgtggtctgaggttgtttcatgtgt
tgatgactaagtgtcacatcaggaagacccacctttgtcttgtttttctt
tttttgataatgagcatagttgggctaatagttctaaggaaagggaattt
acaacaagggctctgagctttgtatagagacattaatccctttgccactt
cctaggactttatcagctaagtgaagctactgacaattagatgtgaatga
gactttgtacacttagtcctcattttaaagaccagatacgtttgactaaa
cctgttggggcccggagaggtgcctggagctcctccaatcgctggagcct
ggggtctgcttttcctgccttactggctctaatctctcagaagctgtcct
ttggcaaatcattagcaagctgtagcttttctgacaagtccttactggga
gttcttttcataacacgtaatctccttaagacctaagatgaaccccgagg
gtgagcagctagaaacgaaaaaccccctccatccactgagaattagcctg
cacaaggtgacgtggcataataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_58484347_58485419
seq2: B6Ng01-249B01.b_45_1131

seq1  GAATTCACACTTGCCACATAAAGAGAAGCTTTCTGAAGCACAGAAACGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACTTGCCACATAAAGAGAAGCTTTCTGAAGCACAGAAACGCC  50

seq1  CATTTAGAATGAACTCATGGAAACCCTACTTAAAATGCAGTGTTCCTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGAATGAACTCATGGAAACCCTACTTAAAATGCAGTGTTCCTTAT  100

seq1  GTCAACAAAAGTCTACTTAGGCAGGATAAATAGGTGAAGCCATGAATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACAAAAGTCTACTTAGGCAGGATAAATAGGTGAAGCCATGAATTTC  150

seq1  CAGTCTCCTGATGCCAAATTCAATCCCACTTCTTCAAAAAGACCCTGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCCTGATGCCAAATTCAATCCCACTTCTTCAAAAAGACCCTGTTA  200

seq1  TTGCTGCGTCACCCTGTGAGAACTTCATATTTGCTTTGGATCACTCTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGCGTCACCCTGTGAGAACTTCATATTTGCTTTGGATCACTCTGAT  250

seq1  ATGTCCTCTATTGATGAAGGAGATGTGCCAGGGTTTAAGTAAGGCTGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTCTATTGATGAAGGAGATGTGCCAGGGTTTAAGTAAGGCTGTGA  300

seq1  CCACATTCAGTCTAGACTCTATCATCTTCGAGCAAATACATGAATAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTCAGTCTAGACTCTATCATCTTCGAGCAAATACATGAATAAAAA  350

seq1  GCCTCTCAGAGGCACAGGCTGTAGTTTAGACCACAAAGAGAAACTACCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCAGAGGCACAGGCTGTAGTTTAGACCACAAAGAGAAACTACCAA  400

seq1  AGTTGTAAGAAAAACAAGAAAACAACTTTACTAGCTTAGCATGGCAGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTAAGAAAAACAAGAAAACAACTTTACTAGCTTAGCATGGCAGCTC  450

seq1  TCAGGCAGAAGCAGGACAGTCATGAGTTCAAGGTCAACCTGCACTACATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCAGAAGCAGGACAGTCATGAGTTCAAGGTCAACCTGCACTACATG  500

seq1  GCAAATTCCAAGCCACTTTGAATTGTGGCATAAGACCCTATCTCAAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATTCCAAGCCACTTTGAATTGTGGCATAAGACCCTATCTCAAAAGA  550

seq1  GTAAAAAAATAAGTCTTTGTTTATGGGGAAAAAATGTAGTTTAAATGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAAATAAGTCTTTGTTTATGGGGAAAAAATGTAGTTTAAATGCTT  600

seq1  CTTTACATATAGTAGGACAAAGAATATGTAAAAGAAGACAATAATTCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACATATAGTAGGACAAAGAATATGTAAAAGAAGACAATAATTCCAT  650

seq1  TTTGACCTGGAAGTGTGCAAAATTATTTGTTTACCAGCAGGTGAATGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACCTGGAAGTGTGCAAAATTATTTGTTTACCAGCAGGTGAATGCTT  700

seq1  AATTTCTAAGAAGCAATCATAAAGTTTTTAATTAGAAAAGATCATTTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTAAGAAGCAATCATAAAGTTTTTAATTAGAAAAGATCATTTATT  750

seq1  TATTTCCAGAAAACATCAAATAAAAAGGAGAAATAGTAATAAGTATATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCAGAAAACATCAAATAAAAAGGAGAAATAGTAATAAGTATATTA  800

seq1  GTTA-TTTTTCTGTGGCTATGATAAAATACCATGACCAAAGCAACTCACG  849
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTTTTCTGTGGCTATGATAAAATACCATGACCAAAGCAACTCACG  850

seq1  GAAGAAAGTTTATTTTTG-TTTATAGATGCAGACG-AAGGGTTCAT-AAG  896
      |||||||||||||||||| |||||||||||||||| |||||||||| |||
seq2  GAAGAAAGTTTATTTTTGTTTTATAGATGCAGACGAAAGGGTTCATAAAG  900

seq1  GGCAGG-TGAAGCAAGAAGCTGAGAACTCATGTCTTCAA-CAAAAGCTCA  944
      |||||| |||||||||||||||||||||||||||||||| ||||||||||
seq2  GGCAGGTTGAAGCAAGAAGCTGAGAACTCATGTCTTCAACCAAAAGCTCA  950

seq1  AAGCAAAGATCAAACTACATGCATGTA-TCTCTGTTTCTG-TATTTTGTA  992
      ||||||||||| ||||||||||||||| |||||||||||| |||||||||
seq2  AAGCAAAGATC-AACTACATGCATGTATTCTCTGTTTCTGTTATTTTGTA  999

seq1  AGGGTATG-AAATC-TGAAAGG-CCAC-TCCCAGTGACTTCG-TCTTCTC  1037
      |||||||| ||||| ||||||| |||| |||||||||||||| |||||||
seq2  AGGGTATGAAAATCTTGAAAGGCCCACTTCCCAGTGACTTCGTTCTTCTC  1049

seq1  CAGCAAG-TTTGCACCATTTCCCCAGACAGCA-CTACC  1073
      ||||||| |||||||||||||||||||||||| |||||
seq2  CAGCAAGTTTTGCACCATTTCCCCAGACAGCACCTACC  1087

seq1: chr4_58626416_58627543
seq2: B6Ng01-249B01.g_68_1190 (reverse)

seq1  TTATTATGACAACGTCA-CTTGTGCAGCCTATATCTCAGTGGATGGA-GG  48
      |||||||| | |||||| ||||||||| |||  |||||||||||||| ||
seq2  TTATTATG-CCACGTCACCTTGTGCAGGCTAATTCTCAGTGGATGGAGGG  49

seq1  GGTTATCTGTTTCTAAGCTGCTCA-CCTCGGGGTTCATCCTTAGGGTCTT  97
      |||| |  |||||| ||||||||| ||||||||||||| |||| ||||||
seq2  GGTTTTTCGTTTCT-AGCTGCTCACCCTCGGGGTTCAT-CTTA-GGTCTT  96

seq1  AAGGAGATTTACGTTGTTATGAAAAGAACTCCCAGGTAGGGACTTGTCAA  147
      ||||||| ||||| |||||||||||||||||||| ||| ||||||||| |
seq2  AAGGAGA-TTACG-TGTTATGAAAAGAACTCCCA-GTAAGGACTTGTC-A  142

seq1  GAAAAGCTACAGCTTGCTAATGATTTGCCAAAGGACAGCTTCTGAGAGAT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCTACAGCTTGCTAATGATTTGCCAAAGGACAGCTTCTGAGAGAT  192

seq1  TAGAGCCAGTAAGGCAGGAAAAGCAGACCCCAGGCTCCAGCGATTGGAGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCCAGTAAGGCAGGAAAAGCAGACCCCAGGCTCCAGCGATTGGAGG  242

seq1  AGCTCCAGGCACCTCTCCGGGCCCCAACAGGTTTAGTCAAACGTATCTGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAGGCACCTCTCCGGGCCCCAACAGGTTTAGTCAAACGTATCTGG  292

seq1  TCTTTAAAATGAGGACTAAGTGTACAAAGTCTCATTCACATCTAATTGTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAAATGAGGACTAAGTGTACAAAGTCTCATTCACATCTAATTGTC  342

seq1  AGTAGCTTCACTTAGCTGATAAAGTCCTAGGAAGTGGCAAAGGGATTAAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTTCACTTAGCTGATAAAGTCCTAGGAAGTGGCAAAGGGATTAAT  392

seq1  GTCTCTATACAAAGCTCAGAGCCCTTGTTGTAAATTCCCTTTCCTTAGAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTATACAAAGCTCAGAGCCCTTGTTGTAAATTCCCTTTCCTTAGAA  442

seq1  CTATTAGCCCAACTATGCTCATTATCAAAAAAAGAAAAACAAGACAAAGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAGCCCAACTATGCTCATTATCAAAAAAAGAAAAACAAGACAAAGG  492

seq1  TGGGTCTTCCTGATGTGACACTTAGTCATCAACACATGAAACAACCTCAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTTCCTGATGTGACACTTAGTCATCAACACATGAAACAACCTCAG  542

seq1  ACCACAGAAGGAAAAATTCCTTTCCTTAATCAAGTTCCACCAAGGTGGAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGAAGGAAAAATTCCTTTCCTTAATCAAGTTCCACCAAGGTGGAA  592

seq1  ACCTAAGTGCAGCCCTTTTGTGAGTTTAAAGCCTCTAAATTCACAACGCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAGTGCAGCCCTTTTGTGAGTTTAAAGCCTCTAAATTCACAACGCC  642

seq1  CTGGATTTACCTCTTCATTCAGGAAGTAATTGGTTTTTAAGGAAAGCGTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTTACCTCTTCATTCAGGAAGTAATTGGTTTTTAAGGAAAGCGTT  692

seq1  AACACCCAGAGGTGGGTCACAGCACCTTTTGAGCTGGAGACCTCAGTCTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCCAGAGGTGGGTCACAGCACCTTTTGAGCTGGAGACCTCAGTCTG  742

seq1  TGTCCTGTTTTACCTACTTGTATTCATCCGAGCCTTGCCTTTCTCTCCAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGTTTTACCTACTTGTATTCATCCGAGCCTTGCCTTTCTCTCCAT  792

seq1  CCTTGCCTAGGGTGCTTCTCTTTAATGCCAGTCCATAGACTTTGGCCAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCTAGGGTGCTTCTCTTTAATGCCAGTCCATAGACTTTGGCCAAA  842

seq1  GGCTGCTGCTATCAAGGGCATACAGGGCAGGAGTTCTAGTCCTCATCTTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTGCTATCAAGGGCATACAGGGCAGGAGTTCTAGTCCTCATCTTA  892

seq1  ACTCTCATGATCTCAGCAATCCTACGTACATCTCTTCTCAGGCCCTCTAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCATGATCTCAGCAATCCTACGTACATCTCTTCTCAGGCCCTCTAC  942

seq1  CCCTGTGAGACTCCTGGATGCCAGCTTATGGCTCCTGTGACATACAGACA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGAGACTCCTGGATGCCAGCTTATGGCTCCTGTGACATACAGACA  992

seq1  CCCTTGTGTGGGATTTCCACGCTCTTCACTTAGCTGTTCATTTCCTGACA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGTGTGGGATTTCCACGCTCTTCACTTAGCTGTTCATTTCCTGACA  1042

seq1  TCATGAAATGCCGCCCTCAGTTCTGGGCTGTGTTCCCACCAATCTTCGTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAAATGCCGCCCTCAGTTCTGGGCTGTGTTCCCACCAATCTTCGTT  1092

seq1  ACCTTGCACACAGATGCCAATCATGGAATTC  1128
      |||||||||||||||||||||||||||||||
seq2  ACCTTGCACACAGATGCCAATCATGGAATTC  1123