BAC Information

Click to search

BAC

Clone NameB6Ng01-249J12
Chromosome1 (Build37)4 (Build37)
Map Location 97,297,870 - 97,298,8918,329,376 - 8,329,772
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC666025, LOC100040685, LOC383603, Tmem157
Downstream geneLOC100041686, Rnu7-ps2, St8sia4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249J12.bB6Ng01-249J12.g
ACCGA057374GA057375
length1,021409
definitionB6Ng01-249J12.b B6Ng01-249J12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(97,297,870 - 97,298,891)(8,329,376 - 8,329,772)
sequence
gaattcactacataatttagtaaaaaggaggagatttggtgcaaatataa
tgcacaaatctgtaactaatgactattagccaaacattttatctgtatat
catcagcaaaggtgaccctgactcgggcatctgaatatttagtcagtcca
tacttgctacccagcagaagattcctgcactctgcttatgttattaaagg
tcagcaaacattgtatttagattctttaagttctctcttcatcaagatta
cataaggagaggataaaggatcatcatagtatgtatgtctaagataaaca
cggccagattacttcatacacacacacacacacacacacacacacacaca
cacacacacagataaactgacatgctcatcatgttttcaataatgcaatg
taagggcaaatttattacttatctatttgcttatatttattattatctat
ttcaactgaatgctttatgataatataggtttatgggaacatcaacatct
aggattttagatatcctacaatataattggacataaaattttcaaaatta
ctgatcatagcaaagaaaacagtatttttctaactccagagttacaaaaa
taacgtcaaaaaaggcagaatgttcatttaagttctaatagatgttcaca
acatggtaaaggtatatggcacatgactgaatgaatacatgtagccatgg
atcttacattgcatttttgagaatttatgaactgtgaggccagaagacat
aaaaaagactacctactgtgtaatcagaagaacaaacaccacagggggtg
gagggaaaatcacatgatatcaaagcctttcgattaagcagaaagctctg
ggactggtcttttaccaaatctgtttttttttttttttttccccatgtgt
tgttgctgttgttctatttaattgatctcagatctaggttttattatctc
tgctggtttactcttttgggtggaattcttcttctgttctaatttattta
ttttattttgtagcttactag

tttggtttctccatctatgataattgagagttttgctgggtatagtagcc
tgggctggcatttgtgttctcttagggtctgcataaacctgtccaggatc
ttctggctttcatagtctctggtgagaagtctggtgtaattctaataggt
ctacctttatatgttacttaacctttttcccttactgcttttaatattct
gtctttgtgtgtgtgtgtgtgtgtgtgtgtgtgcatttgttgttctgatt
attatgtgttggaaagaatttcttttctggtccagtctatttggaattct
gtaggcttcttgtatgttcatgggcatctctttctttaggctagggaagg
tttcttctataattttgctgaagatatttactggccctttaatttgaaaa
acttcaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_97297870_97298891
seq2: B6Ng01-249J12.b_46_1066

seq1  GAATTCACTACATAATTTAGTAAAAAGGAGGAGATTTGGTGCAAATATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTACATAATTTAGTAAAAAGGAGGAGATTTGGTGCAAATATAA  50

seq1  TGCACAAATCTGTAACTAATGACTATTAGCCAAACATTTTATCTGTATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAAATCTGTAACTAATGACTATTAGCCAAACATTTTATCTGTATAT  100

seq1  CATCAGCAAAGGTGACCCTGACTCGGGCATCTGAATATTTAGTCAGTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGCAAAGGTGACCCTGACTCGGGCATCTGAATATTTAGTCAGTCCA  150

seq1  TACTTGCTACCCAGCAGAAGATTCCTGCACTCTGCTTATGTTATTAAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGCTACCCAGCAGAAGATTCCTGCACTCTGCTTATGTTATTAAAGG  200

seq1  TCAGCAAACATTGTATTTAGATTCTTTAAGTTCTCTCTTCATCAAGATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAAACATTGTATTTAGATTCTTTAAGTTCTCTCTTCATCAAGATTA  250

seq1  CATAAGGAGAGGATAAAGGATCATCATAGTATGTATGTCTAAGATAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGAGAGGATAAAGGATCATCATAGTATGTATGTCTAAGATAAACA  300

seq1  CGGCCAGATTACTTCATACACACACACACACACACACACACACACACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCAGATTACTTCATACACACACACACACACACACACACACACACACA  350

seq1  CACACACACAGATAAACTGACATGCTCATCATGTTTTCAATAATGCAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACAGATAAACTGACATGCTCATCATGTTTTCAATAATGCAATG  400

seq1  TAAGGGCAAATTTATTACTTATCTATTTGCTTATATTTATTATTATCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGCAAATTTATTACTTATCTATTTGCTTATATTTATTATTATCTAT  450

seq1  TTCAACTGAATGCTTTATGATAATATAGGTTTATGGGAACATCAACATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTGAATGCTTTATGATAATATAGGTTTATGGGAACATCAACATCT  500

seq1  AGGATTTTAGATATCCTACAATATAATTGGACATAAAATTTTCAAAATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTTAGATATCCTACAATATAATTGGACATAAAATTTTCAAAATTA  550

seq1  CTGATCATAGCAAAGAAAACAGTATTTTTCTAACTCCAGAGTTACAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCATAGCAAAGAAAACAGTATTTTTCTAACTCCAGAGTTACAAAAA  600

seq1  TAACGTCAAAAAAGGCAGAATGTTCATTTAAGTTCTAATAGATGTTCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGTCAAAAAAGGCAGAATGTTCATTTAAGTTCTAATAGATGTTCACA  650

seq1  ACATGGTAAAGGTATATGGCACATGACTGAATGAATACATGTAGCCATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTAAAGGTATATGGCACATGACTGAATGAATACATGTAGCCATGG  700

seq1  ATCTTACATTGCATTTTTGAGAATTTATGAACTGTGAGGCCAGAAGACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACATTGCATTTTTGAGAATTTATGAACTGTGAGGCCAGAAGACAT  750

seq1  AAAAAAGACTACCTACTGTGTAATCAGAAGAACAAACACCACAGGGGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGACTACCTACTGTGTAATCAGAAGAACAAACACCACAGGGGGTG  800

seq1  GAGGGAAAATCACATGATATCAAAGCC-TTCGATTAAGCAGAAAGCTCTG  849
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAGGGAAAATCACATGATATCAAAGCCTTTCGATTAAGCAGAAAGCTCTG  850

seq1  GGACTGGTCTTTTACCAAATCTG-TTTTTTTTTTTTTTTTCCCCATGTGT  898
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GGACTGGTCTTTTACCAAATCTGTTTTTTTTTTTTTTTTTCCCCATGTGT  900

seq1  TGTTGCTGTTGTTCTATTTAATTGATCTCAGATCTA-GTTTTATTATCTC  947
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGTTGCTGTTGTTCTATTTAATTGATCTCAGATCTAGGTTTTATTATCTC  950

seq1  TTGCTGTTTTACTCCTTTGGGTTGGAATTTCTTCCTTCTGTTCTAATTTA  997
       ||||| ||||||| |||||| ||||| ||||| ||||||||||||||||
seq2  -TGCTGGTTTACTCTTTTGGG-TGGAA-TTCTT-CTTCTGTTCTAATTTA  996

seq1  TTTA-TTTATTTTGTTAGCTTACTAG  1022
      |||| ||||||||| |||||||||||
seq2  TTTATTTTATTTTG-TAGCTTACTAG  1021


seq1: chr4_8329376_8329772
seq2: B6Ng01-249J12.g_67_481 (reverse)

seq1  GAATGAAGGTTTTCAACTTAAAGGGCCAGCAAATATCTTCAACAAAATTA  50
      || ||||| ||||||| |||||||||||| ||||||||||| ||||||||
seq2  GATTGAAGTTTTTCAAATTAAAGGGCCAGTAAATATCTTCAGCAAAATTA  50

seq1  TAGAAGAAAACTTCCCAAACCTAAAAAATGACATGCCCATGAACATACAA  100
      ||||||||| |||||| | |||||| || || ||||||||||||||||||
seq2  TAGAAGAAACCTTCCCTAGCCTAAAGAAAGAGATGCCCATGAACATACAA  100

seq1  GAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGACATTCCTCCCG  150
      ||||||||||||| ||||||||||||||||||||||||| |||| | || 
seq2  GAAGCCTACAGAATTCCAAATAGACTGGACCAGAAAAGAAATTCTTTCCA  150

seq1  ACACATAATAATCAGAACAACAAATGCAC-------------------TA  181
      |||||||||||||||||||||||||||||                    |
seq2  ACACATAATAATCAGAACAACAAATGCACACACACACACACACACACACA  200

seq1  AATAAAGAGAGAATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATA  231
       | ||||| ||||||||||||||||||||||| |||||| ||||||||||
seq2  CACAAAGACAGAATATTAAAAGCAGTAAGGGAAAAAGGTTAAGTAACATA  250

seq1  TAAAGGCAGGCCTATCAGAATTACACCAGACTTTTCACCAGAGACTATGA  281
      |||||| || ||||| ||||||||||||||||| ||||||||||||||||
seq2  TAAAGGTAGACCTATTAGAATTACACCAGACTTCTCACCAGAGACTATGA  300

seq1  AAGCCAGAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAA  331
      ||||||||||| ||||||||| | |||| ||||| |||||||||||||||
seq2  AAGCCAGAAGATCCTGGACAGGT-TTATGCAGACCCTAAGAGAACACAAA  349

seq1  TTCCAGCCCAGGCTACTATACCCGGCCAAACTCTCAATTACCATAGATGG  381
      | ||||||||||||||||||||| || ||||||||||||| |||||||||
seq2  TGCCAGCCCAGGCTACTATACCCAGCAAAACTCTCAATTATCATAGATGG  399

seq1  AGAAACCAAAGTATTC  397
      ||||||||||| ||||
seq2  AGAAACCAAAGAATTC  415


| Home | SequenceCutter | Blast | Download |