BAC Information

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BAC

Clone NameB6Ng01-250G15
Chromosome4 (Build37)
Map Location 29,267,070 - 29,400,524
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC230044, LOC665141, LOC100040773, Epha7, LOC100040907, LOC100040811
Downstream geneLOC665185
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250G15.bB6Ng01-250G15.g
ACCGA057967GA057968
length9661,196
definitionB6Ng01-250G15.b B6Ng01-250G15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,399,559 - 29,400,524)(29,267,070 - 29,268,290)
sequence
gaattcaaggtgtgttccaccattgcccagctcgggaagactttatacag
catatgtctttgtctagtttgctgctacacagaacagagtacaaatttgc
ctctcataattcaggatgtggtgaaatccatgtgctgagagtcatgttac
atcatcttatgaaggaagatgctagacaatgtgagaggaaaagagatgaa
gctcccatcacaaatcttcctataacatgcatttgctaggttaccacttt
catagcctgatcagtcctcaggcttcgttttccagatctcctgcatgaga
gattatgtttcacacaaataatttcccagtgacatatgcaaacagagtca
cacctggtaattaattataataagataaatttaaattctaattaaatact
cagacatcaggagaaccatgaggatttctaagtttgtttgcctaaagcag
atattaaagtctcattcagccagtaaatctgtgtcaaagttgatataata
agactatatcaatataggttataagcaataatgtggtatacagattaatt
tataaaatatattagtatacatagcatgatctaataatagcaagatgtga
gaagatgacagagcatgtaatataggatttataaaatgacaactttaagc
tgccttaaaagaactactgaacctcatctctgtgtttccttagtaaagta
catttttctacaattattaatgcatagagaaaatatacttatatagcaat
ctactgaacaaaatataatttattgtattctaaaagccagaagttatgcg
ttaatgaaatattttctttaatttctgtaaaattttcttttactttttga
gatgataattatagatttccctttcagctttcctccttgcatgcttcttt
gctgcttttcaagtctatattttatttttcattaattgttgtgatatata
tatcatatatatatat

gaattcagaaaccatgtatgtaataaaactccataggtctgtttggacaa
ttattatgacactcgactgaactatttgttcacttatggggaaacttact
taagtctctttcctttcttttttatagatggttgttttctgtcacctata
aacatctgagaacatctcccttctccacagtttctataactggtgaaatt
gttttccttgattaacaaacacaaataaaaaatacatgagaatacagtga
tctcatataatcaaaataagctgaatatcttcttagaactttgagctcca
ttcagtgatatgaatataatgttaatattaatctctgtagatttctttaa
aggatatgttgtgatgttcattcatgttactctgcctttacattgcatcc
tttgactatttataagaacccagtttacaaataccctttgtaatatcctg
attttgaacacttagcttatttataggcttaaaatatttctcttggttga
acttggaagttttcacactcttctttccaagaagagcagaagagagagaa
tgccctcagagagagctgctgtcagcgatggtttggggaaagttcatgtc
atactgtctgactttcatatcatattataatagctgctttcaggagtcgt
gattgattagggcttgctaaaaattccagcgtcagttgcaggctcaaagg
caacaattcttctgtattaaaaaaaaaaaagtcgactctgtgtcttggtg
tcttttactctcttatcaggagaaagtaaatattgactggcaaaaatacc
agaagaaatggccttaatttttaacccgtattattctcatgtctttattc
acatttattcccagggaaacaatattttgttttattttctccgttgctta
catttttttctgtgagaaaatgaaatgataaagtaactttctgaacttag
cttcaaggattgtgatttaaatatgaaggtaacagtttctttattcttgt
ttttggcctgttcttcttcaagctaaactcattgtattagagtcagtgca
gattgtttgtgacttttcaaatatgtataggtcggtacaaatgctatgta
ttccaaatgagtgacgtcatcaaatttatgattaaccttataactgaagg
tataattacagacctagccagaactgctggtaaatgtgaacctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_29399559_29400524
seq2: B6Ng01-250G15.b_44_1009 (reverse)

seq1  ATATATATATATGATATATATATCACAACAATTAATGAAAAATAAAATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATGATATATATATCACAACAATTAATGAAAAATAAAATAT  50

seq1  AGACTTGAAAAGCAGCAAAGAAGCATGCAAGGAGGAAAGCTGAAAGGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGAAAAGCAGCAAAGAAGCATGCAAGGAGGAAAGCTGAAAGGGAA  100

seq1  ATCTATAATTATCATCTCAAAAAGTAAAAGAAAATTTTACAGAAATTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATAATTATCATCTCAAAAAGTAAAAGAAAATTTTACAGAAATTAAA  150

seq1  GAAAATATTTCATTAACGCATAACTTCTGGCTTTTAGAATACAATAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATTTCATTAACGCATAACTTCTGGCTTTTAGAATACAATAAATT  200

seq1  ATATTTTGTTCAGTAGATTGCTATATAAGTATATTTTCTCTATGCATTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTGTTCAGTAGATTGCTATATAAGTATATTTTCTCTATGCATTAA  250

seq1  TAATTGTAGAAAAATGTACTTTACTAAGGAAACACAGAGATGAGGTTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTAGAAAAATGTACTTTACTAAGGAAACACAGAGATGAGGTTCAG  300

seq1  TAGTTCTTTTAAGGCAGCTTAAAGTTGTCATTTTATAAATCCTATATTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTTTTAAGGCAGCTTAAAGTTGTCATTTTATAAATCCTATATTAC  350

seq1  ATGCTCTGTCATCTTCTCACATCTTGCTATTATTAGATCATGCTATGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTGTCATCTTCTCACATCTTGCTATTATTAGATCATGCTATGTAT  400

seq1  ACTAATATATTTTATAAATTAATCTGTATACCACATTATTGCTTATAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATATATTTTATAAATTAATCTGTATACCACATTATTGCTTATAACC  450

seq1  TATATTGATATAGTCTTATTATATCAACTTTGACACAGATTTACTGGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGATATAGTCTTATTATATCAACTTTGACACAGATTTACTGGCTG  500

seq1  AATGAGACTTTAATATCTGCTTTAGGCAAACAAACTTAGAAATCCTCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGACTTTAATATCTGCTTTAGGCAAACAAACTTAGAAATCCTCATG  550

seq1  GTTCTCCTGATGTCTGAGTATTTAATTAGAATTTAAATTTATCTTATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCCTGATGTCTGAGTATTTAATTAGAATTTAAATTTATCTTATTAT  600

seq1  AATTAATTACCAGGTGTGACTCTGTTTGCATATGTCACTGGGAAATTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATTACCAGGTGTGACTCTGTTTGCATATGTCACTGGGAAATTATT  650

seq1  TGTGTGAAACATAATCTCTCATGCAGGAGATCTGGAAAACGAAGCCTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAAACATAATCTCTCATGCAGGAGATCTGGAAAACGAAGCCTGAG  700

seq1  GACTGATCAGGCTATGAAAGTGGTAACCTAGCAAATGCATGTTATAGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGATCAGGCTATGAAAGTGGTAACCTAGCAAATGCATGTTATAGGAA  750

seq1  GATTTGTGATGGGAGCTTCATCTCTTTTCCTCTCACATTGTCTAGCATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGTGATGGGAGCTTCATCTCTTTTCCTCTCACATTGTCTAGCATCT  800

seq1  TCCTTCATAAGATGATGTAACATGACTCTCAGCACATGGATTTCACCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCATAAGATGATGTAACATGACTCTCAGCACATGGATTTCACCACA  850

seq1  TCCTGAATTATGAGAGGCAAATTTGTACTCTGTTCTGTGTAGCAGCAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAATTATGAGAGGCAAATTTGTACTCTGTTCTGTGTAGCAGCAAAC  900

seq1  TAGACAAAGACATATGCTGTATAAAGTCTTCCCGAGCTGGGCAATGGTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAAAGACATATGCTGTATAAAGTCTTCCCGAGCTGGGCAATGGTGG  950

seq1  AACACACCTTGAATTC  966
      ||||||||||||||||
seq2  AACACACCTTGAATTC  966


seq1: chr4_29267070_29268290
seq2: B6Ng01-250G15.g_69_1264

seq1  GAATTCAGAAACCATGTATGTAATAAAACTCCATAGGTCTGTTTGGACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAACCATGTATGTAATAAAACTCCATAGGTCTGTTTGGACAA  50

seq1  TTATTATGACACTCGACTGAACTATTTGTTCACTTATGGGGAAACTTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATGACACTCGACTGAACTATTTGTTCACTTATGGGGAAACTTACT  100

seq1  TAAGTCTCTTTCCTTTCTTTTTTATAGATGGTTGTTTTCTGTCACCTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCTCTTTCCTTTCTTTTTTATAGATGGTTGTTTTCTGTCACCTATA  150

seq1  AACATCTGAGAACATCTCCCTTCTCCACAGTTTCTATAACTGGTGAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTGAGAACATCTCCCTTCTCCACAGTTTCTATAACTGGTGAAATT  200

seq1  GTTTTCCTTGATTAACAAACACAAATAAAAAATACATGAGAATACAGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCTTGATTAACAAACACAAATAAAAAATACATGAGAATACAGTGA  250

seq1  TCTCATATAATCAAAATAAGCTGAATATCTTCTTAGAACTTTGAGCTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATATAATCAAAATAAGCTGAATATCTTCTTAGAACTTTGAGCTCCA  300

seq1  TTCAGTGATATGAATATAATGTTAATATTAATCTCTGTAGATTTCTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGATATGAATATAATGTTAATATTAATCTCTGTAGATTTCTTTAA  350

seq1  AGGATATGTTGTGATGTTCATTCATGTTACTCTGCCTTTACATTGCATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATGTTGTGATGTTCATTCATGTTACTCTGCCTTTACATTGCATCC  400

seq1  TTTGACTATTTATAAGAACCCAGTTTACAAATACCCTTTGTAATATCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTATTTATAAGAACCCAGTTTACAAATACCCTTTGTAATATCCTG  450

seq1  ATTTTGAACACTTAGCTTATTTATAGGCTTAAAATATTTCTCTTGGTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAACACTTAGCTTATTTATAGGCTTAAAATATTTCTCTTGGTTGA  500

seq1  ACTTGGAAGTTTTCACACTCTTCTTTCCAAGAAGAGCAGAAGAGAGAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGAAGTTTTCACACTCTTCTTTCCAAGAAGAGCAGAAGAGAGAGAA  550

seq1  TGCCCTCAGAGAGAGCTGCTGTCAGCGATGGTTTGGGGAAAGTTCATGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCAGAGAGAGCTGCTGTCAGCGATGGTTTGGGGAAAGTTCATGTC  600

seq1  ATACTGTCTGACTTTCATATCATATTATAATAGCTGCTTTCAGGAGTCGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTCTGACTTTCATATCATATTATAATAGCTGCTTTCAGGAGTCGT  650

seq1  GATTGATTAGGGCTTGCTAAAAATTCCAGCGTCAGTTGCAGGCTCAAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGATTAGGGCTTGCTAAAAATTCCAGCGTCAGTTGCAGGCTCAAAGG  700

seq1  CAACAATTCTTCTGTATTAAAAAAAAAAAAGTCGACTCTGTGTCTTGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATTCTTCTGTATTAAAAAAAAAAAAGTCGACTCTGTGTCTTGGTG  750

seq1  TCTTTTACTCTCTTATCAGGAGAAAGTAAATATTGACTGGCAAAAATACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTACTCTCTTATCAGGAGAAAGTAAATATTGACTGGCAAAAATACC  800

seq1  AGAAGAAATGGCCTTAATTTTTAACCCGTATTATTCTCATGTCTTTATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAATGGCCTTAATTTTTAACCCGTATTATTCTCATGTCTTTATTC  850

seq1  ACATTTATT-CCAAGGAAACAATATTTTGTTTTATTTTCTCCGTTGCTTA  899
      ||||||||| ||| ||||||||||||||||||||||||||||||||||||
seq2  ACATTTATTCCCAGGGAAACAATATTTTGTTTTATTTTCTCCGTTGCTTA  900

seq1  CATTTTTTTCTGTGAGAAAATGAAATGATAAAGTAACTTTCTGAACTTAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTTCTGTGAGAAAATGAAATGATAAAGTAACTTTCTGAACTTAG  950

seq1  CTTCAAGGATTGTGATTTAAATATGAAGGTAAACAGTTTCTTTATTCTTG  999
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTTCAAGGATTGTGATTTAAATATGAAGGT-AACAGTTTCTTTATTCTTG  999

seq1  TTTTTGGCCTGTCTTCCTTCAAGCTAAAACTCATTGTTATTAGAGTCAGT  1049
      ||||||||||||  | ||||||||| |||||||||| |||||||||||||
seq2  TTTTTGGCCTGTTCTTCTTCAAGCT-AAACTCATTG-TATTAGAGTCAGT  1047

seq1  GCAGAATTTGTTTGTGAACTTTTCAAATAATGTAATAGGTTCGTTAACAA  1099
      |||||  ||||||||| ||||||||||| |||| ||||| ||| ||   |
seq2  GCAGA--TTGTTTGTG-ACTTTTCAAAT-ATGT-ATAGG-TCGGTA--CA  1089

seq1  AATGCTATGTATTTCAAATGAGTGACGGTCATCAAATATTAATGGATTTA  1149
      ||||||||||||| |||||||||||| |||||||||| |||   ||||  
seq2  AATGCTATGTATTCCAAATGAGTGAC-GTCATCAAAT-TTA--TGATT--  1133

seq1  AACATTAATAACATGAAAAGTAATAATTAACAAAAAACTTAAGCAGAAAA  1199
      ||| || ||||| ||  |||  ||||||    | | || ||  |||  ||
seq2  AACCTT-ATAAC-TG--AAGGTATAATT----ACAGACCTAGCCAG--AA  1173

seq1  TTGCTGGTAAA-ATGAACTTTTT  1221
       ||||||||||  ||||| ||||
seq2  CTGCTGGTAAATGTGAACCTTTT  1196


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