BAC Information

Click to search

BAC

Clone NameB6Ng01-250I14
Chromosome4 (Build37)
Map Location 62,082,274 - 62,222,742
singlet/doubletdoublet
Overlap genePrpf4, Rnf183, Wdr31, Bspry, Hdhd3, Alad, Pole3, 4933430I17Rik, Rgs3
Upstream geneLOC100039150, LOC100039019, LOC100039177, LOC621093, LOC100039206, LOC621127, LOC100039228, LOC384021, LOC100039247, LOC667278, Mup5, LOC435785, LOC667295, LOC100039305, LOC546832, OTTMUSG00000007485, Mup3, LOC100039345, OTTMUSG00000000231, Zfp37, Slc31a2, Fkbp15, Slc31a1, Cdc26
Downstream geneZfp618, Ambp, Kif12, Col27a1, Orm1, Orm-ps, Orm3, Orm2, Akna, Whrn, Atp6v1g1, 6330416G13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250I14.bB6Ng01-250I14.g
ACCGA058053GA058054
length1,169614
definitionB6Ng01-250I14.b B6Ng01-250I14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,221,553 - 62,222,742)(62,082,274 - 62,082,887)
sequence
gaattccacatattcttgaaagggtgctttcagtaataatctaaactatt
gagatagtccattcattcgtcagcctcctatttgtcatttgtaacctggt
gttgtaaccatgacaacaggctcagcatcaaggagctaccagtcccctca
agcatttaaattggactctgtatacaaattagaaaacgtatcttctccat
ttagtaactgaaaatgtctttgttgtacagacactggccgcaaaaggtgt
tgttttcatgacgtaataccaccacctagtggttgcaactgtcaagacag
agtgctcaggagatttcctctgcagagctctatttccaggaagtaacttt
ctaccacttgaacccttcttctttttcaaggtaataagaaaactgggtca
gttgtgttggttaattttcatcaacttgacataaactagagttatttgga
aagaggagtctcaattgagaaaacacttccaccagattgctggtaggcta
gcccatagggcattctcttaattactgattgatgttggagggttcagccc
agccctctgtgggtcttgacagccttggacaggtggtccttgtgtcttag
ttagggtttcagtgttgttaagatacaccatgactttggcaactcttata
aaggacagcatttgattggggccggctcacaggttcagaggagttgtata
agaaagctggctgagcaagccaggaggaacaagccagaaaacagcccttc
cccacagcctctgcctcaattcctgcctccagattcctgtctagtcagtg
atggacagttacctgcaagtgtctgtaatcccagcccttaagagactgag
gcaggagggacgccatgattttgaagcaatgcagggctgcagagagagcc
cctgcttcaaaccaacaacaaaaggtaatgaagagttagtttcctctcta
acatgggttctcaaccttcctaatgccgagactctttatacagctcctca
tgtgtgtgaccccaaccataacatattcactgctacgtcatataatcact
ttgttattatagaattcatatgtaatatctggtcgatagatatctaatat
acgacccttgttccagggtcatcactcgaagggtcgtgacccagttggaa
cccgagtctgtaacgcata
gaattcctttaacacctttaatgaaaacattctgatcgtacacatttggg
tctgtttctagatctgctgtgtttatttttctttaacgccctaatttcaa
ttgagactccagtaaatatgcaaatgcctgatagggcaaggcgtgcagcg
gcagaatgaagggggaaagacagtgccatctttgctgggctgaacccagg
gccctacacacaccaggcaaggcctccctactattgagccccaaccccta
ccccccagaattctttttttaaaaaacagccactaaagtacagaatgttc
atggtctcccagctgtcgcctaaaacaaagtcttggtggtgaagcattgt
tcattgttcatgtcagaaaggcctttcattcatttgttcgttctttcttt
cttacctttgttttttggtttttgggtttttgtttttgtttttttaagat
ttgtttatttaagccaggtagtggtggtgcacgcctttaatcccagcact
tgggaggcagagacaggcgggtttctgagttcgaggccagccttgtctac
agagtgagttctaggatagcaagggatacatagagaaaccctgtctcgag
ggggggggggggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_62221553_62222742
seq2: B6Ng01-250I14.b_45_1213 (reverse)

seq1  TATGCGTTACAGCATCGGTGGTTCTCAACCTGTGGTCACGACCCCTTTGG  50
      ||||||||||||  |||  ||||| ||| ||| |||||||||||  || |
seq2  TATGCGTTACAGACTCG--GGTTC-CAA-CTG-GGTCACGACCC--TTCG  43

seq1  AGGTTGAATGACCCTGGAACAAGGGTCGTATATTAGATATCCTATCGACC  100
      ||  || ||||||||||||||||||||||||||||||||| |||||||||
seq2  AG--TG-ATGACCCTGGAACAAGGGTCGTATATTAGATAT-CTATCGACC  89

seq1  AGATATTTACATTATGATTTCTAATAATAACAAAGTGATAATTATGACGT  150
      ||||| ||||| ||||| |||| |||||||||||||||| | ||||||||
seq2  AGATA-TTACA-TATGAATTCT-ATAATAACAAAGTGATTA-TATGACGT  135

seq1  AGCAGTGAAATAATGTTATGGTTGGGGTCACCACAACATGAGGAGCTGTA  200
      |||||||||   |||||||||||||||||| ||| |||||||||||||||
seq2  AGCAGTGAA--TATGTTATGGTTGGGGTCA-CAC-ACATGAGGAGCTGTA  181

seq1  TTAAAGAGTCTCGGCATTAGGAAGGTTGAGAACCCATGTTAGAGAGGAAA  250
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TAAAGAGTCTCGGCATTAGGAAGGTTGAGAACCCATGTTAGAGAGGAAA  230

seq1  CTAACTCTTCATTTACCTTTTGTTGTTGGTTTGAAGCAGGGGCTCTCTCT  300
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCTTCA-TTACCTTTTGTTGTTGGTTTGAAGCAGGGGCTCTCTCT  279

seq1  GCAGCCCTGCATTGCTTCAAAATCATGGCGTCCCTCCTGCCTCAGTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCCTGCATTGCTTCAAAATCATGGCGTCCCTCCTGCCTCAGTCTCT  329

seq1  TAAGGGCTGGGATTACAGACACTTGCAGGTAACTGTCCATCACTGACTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGCTGGGATTACAGACACTTGCAGGTAACTGTCCATCACTGACTAG  379

seq1  ACAGGAATCTGGAGGCAGGAATTGAGGCAGAGGCTGTGGGGAAGGGCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAATCTGGAGGCAGGAATTGAGGCAGAGGCTGTGGGGAAGGGCTGT  429

seq1  TTTCTGGCTTGTTCCTCCTGGCTTGCTCAGCCAGCTTTCTTATACAACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGCTTGTTCCTCCTGGCTTGCTCAGCCAGCTTTCTTATACAACTC  479

seq1  CTCTGAACCTGTGAGCCGGCCCCAATCAAATGCTGTCCTTTATAAGAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAACCTGTGAGCCGGCCCCAATCAAATGCTGTCCTTTATAAGAGTT  529

seq1  GCCAAAGTCATGGTGTATCTTAACAACACTGAAACCCTAACTAAGACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAGTCATGGTGTATCTTAACAACACTGAAACCCTAACTAAGACACA  579

seq1  AGGACCACCTGTCCAAGGCTGTCAAGACCCACAGAGGGCTGGGCTGAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCACCTGTCCAAGGCTGTCAAGACCCACAGAGGGCTGGGCTGAACC  629

seq1  CTCCAACATCAATCAGTAATTAAGAGAATGCCCTATGGGCTAGCCTACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACATCAATCAGTAATTAAGAGAATGCCCTATGGGCTAGCCTACCA  679

seq1  GCAATCTGGTGGAAGTGTTTTCTCAATTGAGACTCCTCTTTCCAAATAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCTGGTGGAAGTGTTTTCTCAATTGAGACTCCTCTTTCCAAATAAC  729

seq1  TCTAGTTTATGTCAAGTTGATGAAAATTAACCAACACAACTGACCCAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTTTATGTCAAGTTGATGAAAATTAACCAACACAACTGACCCAGTT  779

seq1  TTCTTATTACCTTGAAAAAGAAGAAGGGTTCAAGTGGTAGAAAGTTACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATTACCTTGAAAAAGAAGAAGGGTTCAAGTGGTAGAAAGTTACTT  829

seq1  CCTGGAAATAGAGCTCTGCAGAGGAAATCTCCTGAGCACTCTGTCTTGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAATAGAGCTCTGCAGAGGAAATCTCCTGAGCACTCTGTCTTGAC  879

seq1  AGTTGCAACCACTAGGTGGTGGTATTACGTCATGAAAACAACACCTTTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCAACCACTAGGTGGTGGTATTACGTCATGAAAACAACACCTTTTG  929

seq1  CGGCCAGTGTCTGTACAACAAAGACATTTTCAGTTACTAAATGGAGAAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCAGTGTCTGTACAACAAAGACATTTTCAGTTACTAAATGGAGAAGA  979

seq1  TACGTTTTCTAATTTGTATACAGAGTCCAATTTAAATGCTTGAGGGGACT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTTTTCTAATTTGTATACAGAGTCCAATTTAAATGCTTGAGGGGACT  1029

seq1  GGTAGCTCCTTGATGCTGAGCCTGTTGTCATGGTTACAACACCAGGTTAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCTCCTTGATGCTGAGCCTGTTGTCATGGTTACAACACCAGGTTAC  1079

seq1  AAATGACAAATAGGAGGCTGACGAATGAATGGACTATCTCAATAGTTTAG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACAAATAGGAGGCTGACGAATGAATGGACTATCTCAATAGTTTAG  1129

seq1  ATTATTACTGAAAGCACCCTTTCAAGAATATGTGGAATTC  1190
      ||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTACTGAAAGCACCCTTTCAAGAATATGTGGAATTC  1169

seq1: chr4_62082274_62082887
seq2: B6Ng01-250I14.g_68_681

seq1  GAATTCCTTTAACACCTTTAATGAAAACATTCTGATCGTACACATTTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTAACACCTTTAATGAAAACATTCTGATCGTACACATTTGGG  50

seq1  TCTGTTTCTAGATCTGCTGTGTTTATTTTTCTTTAACGCCCTAATTTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTCTAGATCTGCTGTGTTTATTTTTCTTTAACGCCCTAATTTCAA  100

seq1  TTGAGACTCCAGTAAATATGCAAATGCCTGATAGGGCAAGGCGTGCAGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACTCCAGTAAATATGCAAATGCCTGATAGGGCAAGGCGTGCAGCG  150

seq1  GCAGAATGAAGGGGGAAAGACAGTGCCATCTTTGCTGGGCTGAACCCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATGAAGGGGGAAAGACAGTGCCATCTTTGCTGGGCTGAACCCAGG  200

seq1  GCCCTACACACACCAGGCAAGGCCTCCCTACTATTGAGCCCCAACCCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTACACACACCAGGCAAGGCCTCCCTACTATTGAGCCCCAACCCCTA  250

seq1  CCCCCCAGAATTCTTTTTTTAAAAAACAGCCACTAAAGTACAGAATGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCAGAATTCTTTTTTTAAAAAACAGCCACTAAAGTACAGAATGTTC  300

seq1  ATGGTCTCCCAGCTGTCGCCTAAAACAAAGTCTTGGTGGTGAAGCATTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCTCCCAGCTGTCGCCTAAAACAAAGTCTTGGTGGTGAAGCATTGT  350

seq1  TCATTGTTCATGTCAGAAAGGCCTTTCATTCATTTGTTCGTTCTTTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTTCATGTCAGAAAGGCCTTTCATTCATTTGTTCGTTCTTTCTTT  400

seq1  CTTACCTTTGTTTTTTGGTTTTTGGGTTTTTGTTTTTGTTTTTTTAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTTTGTTTTTTGGTTTTTGGGTTTTTGTTTTTGTTTTTTTAAGAT  450

seq1  TTGTTTATTTAAGCCAGGTAGTGGTGGTGCACGCCTTTAATCCCAGCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTATTTAAGCCAGGTAGTGGTGGTGCACGCCTTTAATCCCAGCACT  500

seq1  TGGGAGGCAGAGACAGGCGGGTTTCTGAGTTCGAGGCCAGCCTTGTCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGCAGAGACAGGCGGGTTTCTGAGTTCGAGGCCAGCCTTGTCTAC  550

seq1  AGAGTGAGTTCTAGGATAGCAAGGGATACATAGAGAAACCCTGTCTCGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGTTCTAGGATAGCAAGGGATACATAGAGAAACCCTGTCTCGAG  600

seq1  GGGGGGGGGGGGAA  614
      ||||||||||||||
seq2  GGGGGGGGGGGGAA  614