BAC Information

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BAC

Clone NameB6Ng01-253H04
Chromosome4 (Build37)
Map Location 21,741,052 - 21,742,220
singlet/doubletsinglet
Overlap geneUsp45
Upstream genePrdm13, Ccnc, 2610029I01Rik
Downstream gene4930528A17Rik, 5730406M06Rik, Coq3, 6230409E13Rik, LOC100040379, Fbxl4, Pou3f2, LOC664911, 1700025O08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253H04.bB6Ng01-253H04.g
ACCGA060174GA060175
length1,1601,157
definitionB6Ng01-253H04.b B6Ng01-253H04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccacttgccagggttggcagcatatatctttacttgctgagtcat
cttgccagtgcaaattattttaataggtaaatatagcagtaactactagc
tcatactacacccaagctgctcctattaacttttttgacatttctgtatc
taatctaaaggtggacaggacagggaaaaatagctgcttcaaggctaaag
attccagaatcagagcaataaaagggggtataaaatacagtgtgtgaagc
acagaataagaactcacctggggaattagtataaacacacacacacacgt
gcttggtgattactttcaaagttgaaatcatttgatttatggagtgctta
cgaatcaaaggaagctgtgctaatggttggccgtaaaataactggtgttg
gagacactgaccaaacaataggctgtaagtatgtgtagttaaactagttg
acacacacacaggctgctctcaagctcacagagatccgcctgcctctgcc
tcccagtgctggaattaaaggcatgcgccaccattagccagctgacagaa
agtacattaacaaaactgctcactggcttttaaaatctatcctttgcaag
cctctacctttgttgaaaactattaaaaggcattatccaaagcactgaat
aacagagaagacatactttaaaaccaatagacattttatagtaactatta
agaaattctgtcttcttacgaaaaaatgcacaaaaaggagacacagttga
aagaaaaccagcgttattgctctatgcatgcactagatggcagcattgca
acacagagtaacaaggcacatgctggagaaattatgccccacccacctcc
ttgggagacagggtctcactatgtagctctggctgtcctggaaacacact
atgtagacaaagctggcctcaaactcctagagacccacctgcctttgcct
cccaagtgctgcaattaaggtgtgtaccactgtcccaactgtactacaac
aggtgttagagcacttgcttataaatagtcacatattataaacagtatat
accaccaaaataagtagagggatacttacgaacttcttacaggtgtcctt
tacaatgatgagctcatactacaggatctcaaacaaatgtacactaagtg
agactagatg
gaattctcacctgaggaataccgaagggctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaagcaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggtgaggatgtgtagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaagcagtctggcggttcctca
gaaaattggacatagtactaccggaggatcctgcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaagaacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacaaaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacccaatcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccagaaac
ttaggatacccaagatataagatttgctaaacgcatgaaactcaagaaga
acaaagaccaaagtgtggacactttgccccttcttataaatgggaacaaa
acacccatggaaggagttacagagacaaaatttggagctgtgacgaaaga
atggaccatctagtgattgccatatccaggactccatcccttaatcagct
tccaaacgctgacaccattgcatacactagcaagattttgctgaaagacc
cagatatagctgtctcttgtgagactatgccggggccctagcaaacacag
aagtggatgctcacagtcagctattggatgggtcacacggctcccaatgg
aggagctagagaaagcacccaggaactaaagggaactgcaccctatagtg
gacacatatgaactacagtaccccggagctctgtctctagctgcatatgt
tatcaaaaggatgacttagtcagcaatcactggaaagaagaagttccctt
ggactgcaccttatatggcttcagttaccaggggaacgtccaggccaaaa
aacgcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_21741052_21742220
seq2: B6Ng01-253H04.b_45_1204 (reverse)

seq1  CATCTAATTCTCACTTAGTGTACATTTTGTTTTGAGATTCTGTTAGTATG  50
      ||||| | |||||||||||||||||||   |||||||| ||| |||||||
seq2  CATCT-AGTCTCACTTAGTGTACATTT--GTTTGAGATCCTG-TAGTATG  46

seq1  AGCTCATCATTGTAAAGGACA-CTGTAAGATG-TCGTATGTATTTTATTT  98
      ||||||||||||||||||||| |||||||| | ||||| |||   |   |
seq2  AGCTCATCATTGTAAAGGACACCTGTAAGAAGTTCGTAAGTA---TCCCT  93

seq1  CTAACTTTATTTTTGTGGTATTATACTGTTTATAATATGTGACTAATTTA  148
      |||   ||||||| |||||| ||||||||||||||||||||||| |||||
seq2  CTA--CTTATTTTGGTGGTA-TATACTGTTTATAATATGTGACT-ATTTA  139

seq1  TAAGCAAGTGCTCTAACA-CTGTTGTAGTTACAGTTGGGACAGTGGTACA  197
      |||||||||||||||||| ||||||||| |||||||||||||||||||||
seq2  TAAGCAAGTGCTCTAACACCTGTTGTAG-TACAGTTGGGACAGTGGTACA  188

seq1  CACCTTTAATTGCAGCACTTGGGAGGCAAAGGCAGGTGGGTCTCTAGGAG  247
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CACC-TTAATTGCAGCACTTGGGAGGCAAAGGCAGGTGGGTCTCTAGGAG  237

seq1  TTTGAGGCCAGCTTTGTCTACATAGTGTG-TTCCAGGACAGCCAGAGCTA  296
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTGAGGCCAGCTTTGTCTACATAGTGTGTTTCCAGGACAGCCAGAGCTA  287

seq1  CATAGTGAGACCCTGTCTCCCAAGGAGGTGGGTGGGGCATAATTTCTCCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTGAGACCCTGTCTCCCAAGGAGGTGGGTGGGGCATAATTTCTCCA  337

seq1  GCATGTGCCTTGTTACTCTGTGTTGCAATGCTGCCATCTAGTGCATGCAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGCCTTGTTACTCTGTGTTGCAATGCTGCCATCTAGTGCATGCAT  387

seq1  AGAGCAATAACGCTGGTTTTCTTTCAACTGTGTCTCCTTTTTGTGCATTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAATAACGCTGGTTTTCTTTCAACTGTGTCTCCTTTTTGTGCATTT  437

seq1  TTTCGTAAGAAGACAGAATTTCTTAATAGTTACTATAAAATGTCTATTGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGTAAGAAGACAGAATTTCTTAATAGTTACTATAAAATGTCTATTGG  487

seq1  TTTTAAAGTATGTCTTCTCTGTTATTCAGTGCTTTGGATAATGCCTTTTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGTATGTCTTCTCTGTTATTCAGTGCTTTGGATAATGCCTTTTA  537

seq1  ATAGTTTTCAACAAAGGTAGAGGCTTGCAAAGGATAGATTTTAAAAGCCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTTCAACAAAGGTAGAGGCTTGCAAAGGATAGATTTTAAAAGCCA  587

seq1  GTGAGCAGTTTTGTTAATGTACTTTCTGTCAGCTGGCTAATGGTGGCGCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCAGTTTTGTTAATGTACTTTCTGTCAGCTGGCTAATGGTGGCGCA  637

seq1  TGCCTTTAATTCCAGCACTGGGAGGCAGAGGCAGGCGGATCTCTGTGAGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTAATTCCAGCACTGGGAGGCAGAGGCAGGCGGATCTCTGTGAGC  687

seq1  TTGAGAGCAGCCTGTGTGTGTGTCAACTAGTTTAACTACACATACTTACA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGCAGCCTGTGTGTGTGTCAACTAGTTTAACTACACATACTTACA  737

seq1  GCCTATTGTTTGGTCAGTGTCTCCAACACCAGTTATTTTACGGCCAACCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATTGTTTGGTCAGTGTCTCCAACACCAGTTATTTTACGGCCAACCA  787

seq1  TTAGCACAGCTTCCTTTGATTCGTAAGCACTCCATAAATCAAATGATTTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCACAGCTTCCTTTGATTCGTAAGCACTCCATAAATCAAATGATTTC  837

seq1  AACTTTGAAAGTAATCACCAAGCACGTGTGTGTGTGTGTTTATACTAATT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGAAAGTAATCACCAAGCACGTGTGTGTGTGTGTTTATACTAATT  887

seq1  CCCCAGGTGAGTTCTTATTCTGTGCTTCACACACTGTATTTTATACCCCC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGTGAGTTCTTATTCTGTGCTTCACACACTGTATTTTATACCCCC  937

seq1  TTTTATTGCTCTGATTCTGGAATCTTTAGCCTTGAAGCAGCTATTTTTCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTGCTCTGATTCTGGAATCTTTAGCCTTGAAGCAGCTATTTTTCC  987

seq1  CTGTCCTGTCCACCTTTAGATTAGATACAGAAATGTCAAAAAAGTTAATA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTGTCCACCTTTAGATTAGATACAGAAATGTCAAAAAAGTTAATA  1037

seq1  GGAGCAGCTTGGGTGTAGTATGAGCTAGTAGTTACTGCTATATTTACCTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGCTTGGGTGTAGTATGAGCTAGTAGTTACTGCTATATTTACCTA  1087

seq1  TTAAAATAATTTGCACTGGCAAGATGACTCAGCAAGTAAAGATATATGCT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATAATTTGCACTGGCAAGATGACTCAGCAAGTAAAGATATATGCT  1137

seq1  GCCAACCCTGGCAAGTGGAATTC  1169
      |||||||||||||||||||||||
seq2  GCCAACCCTGGCAAGTGGAATTC  1160