BAC Information

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BAC

Clone NameB6Ng01-255K08
Chromosome4 (Build37)
Map Location 38,800,993 - 38,802,199
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC277771, LOC100039448, LOC665520
Downstream geneLOC100039487, 1700009N14Rik, LOC435775, LOC329824
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255K08.bB6Ng01-255K08.g
ACCGA061804GA061805
length1,1871,214
definitionB6Ng01-255K08.b B6Ng01-255K08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatccactggtctatgtccctcattatgtgcattttgcttatcac
ctttttaatcactctaatgaaacaaaaatactgaatcagtactctcagtg
tcagcacaaggggtgtctcttaccttgtgtatatcacatattattgacat
gtaaagtgtaatatcccaccagatatttgttgaatgtgtaagtcaatggt
tttaggttttccttgatcacaacattgaacctacttttatgggtttattt
tccacctcagatcctaagcataatttccatttagattgtttgattatttc
ttttgagatgttggttttcctgttgtgtttttaaagttctccatgttgct
gtagtataaatatagtggaaatataaatatttatactgtagtataagtat
gtgacttgcaaatattttctcatattctgggacttgtgtatttcttgttc
tggctgtgttttataggaaacagaagttcttaaattcgaccaaacaggtt
gatctctttcttctgtcagttttgctttctgtgctttttctaagtccttt
cctcctccaaaatgcaaatgattcgtatcaaattttcacacaggatttac
actcttaggcttatatttggtttatcatctgctttagttgacttttccga
gggtgtgaagtattcattcttatgtggttatacagttgtttcattagcat
tttatttaaaaatcactttcaagtttttctacaaatctatctttgtcctt
ttgacaaaaaataaagtctatatttggggttctgtttccctaccttctgt
gcaatattcagccactttctatatccttgctagtatcagggtctttcttg
ctatagctttgttatatgtcttgaagtaaattagttttctgatttttttc
ttaaggcttgtgttggtttattttttttttgttgatatttccaaatttgc
tgattagttttgattgttttgtatcaaatctatatactaatttcagtgga
atggaagctttctattcatgtaaccaaaatttctctatgcttagttattt
tttaaaatttcacattaattaactgtcttcatatttgttcatttatgtta
agaagcactttatttagactactttagtgatattgttttaattccaagta
cctttttaattaattaagcatatgttgtaaagattac

gaattcaattgagttgctagccaaaggactccaaggaaatcccccaaaca
acccaggctgttcttaaaacagttaggttgctctccataaacttagctca
gagacccattgctgaggaacaccctcacacaactcattcaacatgaagaa
atcaagcttgtgtctgcatgagtcttcagtcctacattctagtgtctttc
atatgaaagggtactcttctaggtaccaacagaggaatgtagagaccaac
ccagatgtgaatttttggcctatcatctttcctgcacataagatatgcat
agaactttgaggacaaccaagcaatgtctgtctgttcagaatctgtttag
acttaaggcctatctcatgggatggaacccacaaaacactacctgggtga
ccaagaaccaaaggctaaatattccagtgacctatggtaaaagtaaacac
tactagtttaaaaaatatgtattaataaaatggcttctaatgatattctt
ctatatttatagatcagtgccttatttagttatcaccagagaagttgatg
tccccctgcagcagacagaaacagatgcaaagatccacaaccagttgtta
tggagaaaatgactttggaacatacatatctaaataggatgtttctatca
aacccctcttctgtaactcaggaaacccacagaagaagaagtggaaagat
tttaagagccaaatgggacagaagacactaactagaaaaaagttctttaa
ctcaattaagcaaggttcatcttaactcacagagactgaaggagcaagca
caggacctacataatttctgtaccaggtaatatgtatatgtatgtaccag
gtaatatgtgtatgtatgtaccaggtaatatgtgttatgtatgtaccagg
taatatgtgtatgtatgtaccaggttatatgtaatacatattttagcttt
tattttagattttaaaaaaccttaaattctgcatatgagaacagtgggtc
tctcttcttacagcttcttcttgtactcgtttccatctgttgggttgact
tgtccagctagatgtgatgttgtttactttatctatatttattttgtcac
attggtcttatttctagaagctattctttttttaataaggaaaacgtagg
agtgcatctgaattacggggagagaggaaacctgtgagggagattagtag
agggaaaacctgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_38800993_38802199
seq2: B6Ng01-255K08.b_44_1230 (reverse)

seq1  GTAATC-TTACAACATAATTGGCCTCTTATATATTAATATTAAAAAAGTA  49
      |||||| ||||||||||  ||    ||||   ||||  |||||||| |||
seq2  GTAATCTTTACAACATA--TG----CTTA---ATTA--ATTAAAAAGGTA  39

seq1  CATTTTGAAATTATAAACAATATCACTAAGTTAGTCCTAAATTAAAGTGC  99
      |   ||| ||||| |||||||||||||||  |||| ||||| ||||||||
seq2  C---TTGGAATTA-AAACAATATCACTAAAGTAGT-CTAAA-TAAAGTGC  83

seq1  -TCTT-ACATAAAATGAACAAAATATGAAGACAGTAAAATTAATGTGAAA  147
       |||| |||| |||||||| |||||||||||||||  |||||||||||||
seq2  TTCTTAACAT-AAATGAAC-AAATATGAAGACAGT-TAATTAATGTGAAA  130

seq1  TTTTAAAAAATAACCTAAGCATAGAGAAATTTTGGTTACATGAATAGAAA  197
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAAATAA-CTAAGCATAGAGAAATTTTGGTTACATGAATAGAAA  179

seq1  GGCTTCCATTTCCACTGAAATTAGTATATAGATTTGATACAAAACAATCA  247
       ||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  -GCTTCCA-TTCCACTGAAATTAGTATATAGATTTGATACAAAACAATCA  227

seq1  AAACCTAATCAGCAAATTTGGAAATATCAAC-AAAAAAAAATAAACCAAC  296
      ||| ||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAA-CTAATCAGCAAATTTGGAAATATCAACAAAAAAAAAATAAACCAAC  276

seq1  ACAAGCCTTAAGAAAAAAATCAGAAAACTAATTTACTTCAAGACATATAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCTTAAGAAAAAAATCAGAAAACTAATTTACTTCAAGACATATAA  326

seq1  CAAAGCTATAGCAAGAAAGACCCTGATACTAGCAAGGATATAGAAAGTGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTATAGCAAGAAAGACCCTGATACTAGCAAGGATATAGAAAGTGG  376

seq1  CTGAATATTGCACAGAAGGTAGGGAAACAGAACCCCAAATATAGACTTTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATATTGCACAGAAGGTAGGGAAACAGAACCCCAAATATAGACTTTA  426

seq1  TTTTTTGTCAAAAGGACAAAGATAGATTTGTAGAAAAACTTGAAAGTGAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTCAAAAGGACAAAGATAGATTTGTAGAAAAACTTGAAAGTGAT  476

seq1  TTTTAAATAAAATGCTAATGAAACAACTGTATAACCACATAAGAATGAAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATAAAATGCTAATGAAACAACTGTATAACCACATAAGAATGAAT  526

seq1  ACTTCACACCCTCGGAAAAGTCAACTAAAGCAGATGATAAACCAAATATA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACACCCTCGGAAAAGTCAACTAAAGCAGATGATAAACCAAATATA  576

seq1  AGCCTAAGAGTGTAAATCCTGTGTGAAAATTTGATACGAATCATTTGCAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAAGAGTGTAAATCCTGTGTGAAAATTTGATACGAATCATTTGCAT  626

seq1  TTTGGAGGAGGAAAGGACTTAGAAAAAGCACAGAAAGCAAAACTGACAGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGGAGGAAAGGACTTAGAAAAAGCACAGAAAGCAAAACTGACAGA  676

seq1  AGAAAGAGATCAACCTGTTTGGTCGAATTTAAGAACTTCTGTTTCCTATA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGATCAACCTGTTTGGTCGAATTTAAGAACTTCTGTTTCCTATA  726

seq1  AAACACAGCCAGAACAAGAAATACACAAGTCCCAGAATATGAGAAAATAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAGCCAGAACAAGAAATACACAAGTCCCAGAATATGAGAAAATAT  776

seq1  TTGCAAGTCACATACTTATACTACAGTATAAATATTTATATTTCCACTAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGTCACATACTTATACTACAGTATAAATATTTATATTTCCACTAT  826

seq1  ATTTATACTACAGCAACATGGAGAACTTTAAAAACACAACAGGAAAACCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATACTACAGCAACATGGAGAACTTTAAAAACACAACAGGAAAACCA  876

seq1  ACATCTCAAAAGAAATAATCAAACAATCTAAATGGAAATTATGCTTAGGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCAAAAGAAATAATCAAACAATCTAAATGGAAATTATGCTTAGGA  926

seq1  TCTGAGGTGGAAAATAAACCCATAAAAGTAGGTTCAATGTTGTGATCAAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGTGGAAAATAAACCCATAAAAGTAGGTTCAATGTTGTGATCAAG  976

seq1  GAAAACCTAAAACCATTGACTTACACATTCAACAAATATCTGGTGGGATA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCTAAAACCATTGACTTACACATTCAACAAATATCTGGTGGGATA  1026

seq1  TTACACTTTACATGTCAATAATATGTGATATACACAAGGTAAGAGACACC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTTTACATGTCAATAATATGTGATATACACAAGGTAAGAGACACC  1076

seq1  CCTTGTGCTGACACTGAGAGTACTGATTCAGTATTTTTGTTTCATTAGAG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGCTGACACTGAGAGTACTGATTCAGTATTTTTGTTTCATTAGAG  1126

seq1  TGATTAAAAAGGTGATAAGCAAAATGCACATAATGAGGGACATAGACCAG  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAAAAAGGTGATAAGCAAAATGCACATAATGAGGGACATAGACCAG  1176

seq1  TGGATGAATTC  1207
      |||||||||||
seq2  TGGATGAATTC  1187


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