BAC Information

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BAC

Clone NameB6Ng01-256B10
Chromosome4 (Build37)
Map Location 20,619,557 - 20,789,220
singlet/doubletdoublet
Overlap geneE130310K16Rik
Upstream geneWwp1, Slc7a13, Atp6v0d2, LOC667282, Ttpa, LOC667301, EG664800
Downstream genePrdm13, Ccnc, 2610029I01Rik, Usp45, 4930528A17Rik, 5730406M06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256B10.bB6Ng01-256B10.g
ACCGA062136GA062137
length1,1521,143
definitionB6Ng01-256B10.b B6Ng01-256B10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,619,557 - 20,620,709)(20,788,062 - 20,789,220)
sequence
gaattcatcataaccaagttccacagttgtacatactaagttgaacacgt
tgaattattttcacaaaagattaacaatcatcttgtggcattgatataaa
tcttgatttagtgattgagttgtcatatattaataggcttgagtcaatta
atacacatattaaataatgccctgatttgattcactactttcacttaata
gaaattctacagaacacatacagaaagttcattagcatagctaataaaaa
ttcatttttcttatatgccaatggtttttaaagaaaaagacacatgagaa
aaattaaactaacattgatctctatgccaagaagtaaaattaaatgaaaa
atggtctctgggtacccattcctcattattacaatatgtaggaatagtac
aatatcctacattggttttcttttttattatttctaatcttgctgcataa
tagaaataaaataggtgattaaatattttctacttgaaactagtgtgccc
tgtcttctgactaaatttctgaagctatatatgtctttcaagtcgaaaga
gctattgagaaggcagatttctcagtgatttctgataaatgtaggcttgc
tgagagattaacttattggacacacataaattaattttcctcaaaccttt
aagaatcatcttattataaaagtgttgtcattttgtaatatttaaatcac
ttatagtgcacagtttggtttgtaattttagaataatgtatttaatctac
ctcagtcatcatcattttcttaccactttataaagcctatgtaatcacaa
atccaaggacagccccattagaaggcagaactgcagcttgccctaaattt
ggaactactccaagagaaaacttaagtccagtgcagttttagttccagtc
tctgtcaggagctgcccaggatgcccctacaaggtctgatacatttcaga
cattgagcttcagaatcaagattgtccatcactctactggtttcgttgct
gagaggaatacaaagtgtcagacatttctcaagagtgcacagaagcagac
atgtgaatgataacatccaccatcttaggtacaggtccttttctgctgtt
gcagaaatagaagctcattataatgtttggccaggttactacatttctct
aa

gaattcttgttggtaggtcatgagttgtctaacattaccgcaggggagag
ggtgatagaaccaattacatttttgaccctgaagtcacaacagatgcaca
atttgccaaaaatatttcaaaattctataataatggtaatatttcttaaa
gtttaaagtcctaaaatcagttgccttgttataaggagttattcagaagt
aaacaaacaattttgtattgcaacctaatagatattagacattatattca
tttttgatttctttgaatttttgatctctacattttgatattttttcaca
tatcttgtaaatatatattctctaagcatattattgtataatcattaaca
tttacaaccaatgcaaagaataacaccctcttcaggtaaaactttgttat
gaaaatcttttcagaaaataaaggaaaatttaaaaatctaacttataagt
gatcaaaactatacaaaagaaaaaaatatatagaaaagaattcaaataat
tctcaggaaattgtggctattaatataaaaaatagaaaaggagaaagtag
aattaaccaggcaagcatcatctcacaaaacaagtaaaaacgagagaaca
aaaatagagaacagaaaccatgaatatgcaatcaaaagttaactggtagg
aaacaacaaaaagctgttatgtatgtatacaaaccaattatttgaagaaa
taaaaactaaaacttatagacaaactgaaagctgatataatcaagttgaa
agaaaacaagtacaagcatgtaaagcttaattcattgggaaaataacttg
aactgtgaggagccgcccctgcaagcgccattacaagatggagctgacat
ctggtgttctaaatggtaaacaaatagtctgcgcatgtgctggggtattt
ttccatttccttgtgccctgcctgtcccgtgcgtcatctgggctgatggt
gagcaaccagtcaggtgaaatatgtctccaaccgctattgtggtctattg
aggaccagtttctgtgttctgggtctcttccccagaagtgatcatctttg
ctcgagatgcaataagcttgctgcagacgatcgagtgtgtctgtgtgtgt
gtcctcgctgcgagactctatccacaggacgtatggtcccaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_20619557_20620709
seq2: B6Ng01-256B10.b_46_1197

seq1  GAATTCATCATAACCAAGTTCCACAGTTGTACATACTAAGTTGAACACGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCATAACCAAGTTCCACAGTTGTACATACTAAGTTGAACACGT  50

seq1  TGAATTATTTTCACAAAAGATTAACAATCATCTTGTGGCATTGATATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTATTTTCACAAAAGATTAACAATCATCTTGTGGCATTGATATAAA  100

seq1  TCTTGATTTAGTGATTGAGTTGTCATATATTAATAGGCTTGAGTCAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATTTAGTGATTGAGTTGTCATATATTAATAGGCTTGAGTCAATTA  150

seq1  ATACACATATTAAATAATGCCCTGATTTGATTCACTACTTTCACTTAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACATATTAAATAATGCCCTGATTTGATTCACTACTTTCACTTAATA  200

seq1  GAAATTCTACAGAACACATACAGAAAGTTCATTAGCATAGCTAATAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCTACAGAACACATACAGAAAGTTCATTAGCATAGCTAATAAAAA  250

seq1  TTCATTTTTCTTATATGCCAATGGTTTTTAAAGAAAAAGACACATGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTTCTTATATGCCAATGGTTTTTAAAGAAAAAGACACATGAGAA  300

seq1  AAATTAAACTAACATTGATCTCTATGCCAAGAAGTAAAATTAAATGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAACTAACATTGATCTCTATGCCAAGAAGTAAAATTAAATGAAAA  350

seq1  ATGGTCTCTGGGTACCCATTCCTCATTATTACAATATGTAGGAATAGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCTCTGGGTACCCATTCCTCATTATTACAATATGTAGGAATAGTAC  400

seq1  AATATCCTACATTGGTTTTCTTTTTTATTATTTCTAATCTTGCTGCATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCTACATTGGTTTTCTTTTTTATTATTTCTAATCTTGCTGCATAA  450

seq1  TAGAAATAAAATAGGTGATTAAATATTTTCTACTTGAAACTAGTGTGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATAAAATAGGTGATTAAATATTTTCTACTTGAAACTAGTGTGCCC  500

seq1  TGTCTTCTGACTAAATTTCTGAAGCTATATATGTCTTTCAAGTCGAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTGACTAAATTTCTGAAGCTATATATGTCTTTCAAGTCGAAAGA  550

seq1  GCTATTGAGAAGGCAGATTTCTCAGTGATTTCTGATAAATGTAGGCTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTGAGAAGGCAGATTTCTCAGTGATTTCTGATAAATGTAGGCTTGC  600

seq1  TGAGAGATTAACTTATTGGACACACATAAATTAATTTTCCTCAAACCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGATTAACTTATTGGACACACATAAATTAATTTTCCTCAAACCTTT  650

seq1  AAGAATCATCTTATTATAAAAGTGTTGTCATTTTGTAATATTTAAATCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCATCTTATTATAAAAGTGTTGTCATTTTGTAATATTTAAATCAC  700

seq1  TTATAGTGCACAGTTTGGTTTGTAATTTTAGAATAATGTATTTAATCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTGCACAGTTTGGTTTGTAATTTTAGAATAATGTATTTAATCTAC  750

seq1  CTCAGTCATCATCATTTTCTTACCACTTTATAAAGCCTATGTAATCACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCATCATCATTTTCTTACCACTTTATAAAGCCTATGTAATCACAA  800

seq1  ATCCAAGGACAGCCCCATTAGAAGGCAGAACTGCAGCTTGCCCTAAATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGGACAGCCCCATTAGAAGGCAGAACTGCAGCTTGCCCTAAATTT  850

seq1  GGAACTACTCCAAGAGAAAACTTAAGTCCAGTGCAGTTTTAGTTCCAGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTACTCCAAGAGAAAACTTAAGTCCAGTGCAGTTTTAGTTCCAGTC  900

seq1  TCTGTCAGGGAGCTGCCCAGGATGCCCCTACAAGGTCTGATACATTTCAG  950
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCA-GGAGCTGCCCAGGATGCCCCTACAAGGTCTGATACATTTCAG  949

seq1  ACATTGAGCTTCAGAATCAAGATTGTCCATCACTCTACTGG-TTCGTTGC  999
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACATTGAGCTTCAGAATCAAGATTGTCCATCACTCTACTGGTTTCGTTGC  999

seq1  TGAGAGG-ATACAAAGTGTCAGACAATTCTCAAGAGTGCACAGAAGCAGA  1048
      ||||||| ||||||||||||||||| ||||||||||||||||||||||||
seq2  TGAGAGGAATACAAAGTGTCAGACATTTCTCAAGAGTGCACAGAAGCAGA  1049

seq1  CATGTG-ATGATAACAT-CACCATCCTTAGGTACAAGGGTCCTTTTCTGC  1096
      |||||| |||||||||| |||||| ||||||||||  |||||||||||||
seq2  CATGTGAATGATAACATCCACCAT-CTTAGGTACA--GGTCCTTTTCTGC  1096

seq1  TGTTTGCAG-AATAG-AGCTCAATTATAATTGTTTTGCAAGGTTTACTAC  1144
      || |||||| ||||| ||||| ||||||| ||||| || ||| |||||||
seq2  TG-TTGCAGAAATAGAAGCTC-ATTATAA-TGTTTGGCCAGG-TTACTAC  1142

seq1  A-TTCTCTAA  1153
      | ||||||||
seq2  ATTTCTCTAA  1152


seq1: chr4_20788062_20789220
seq2: B6Ng01-256B10.g_66_1208 (reverse)

seq1  TTTGGGACCATATGTCCTTGTGTGATAAGGAGTCTCGCCGGCGAGGACAC  50
      |||||||||||| |||| |||| ||||  |||||||| | ||||||||||
seq2  TTTGGGACCATACGTCC-TGTG-GATA--GAGTCTCG-CAGCGAGGACAC  45

seq1  ACACACAGGACACACTCGGATCCTTCTGCAGCAAAGCTTTAATGCATCTC  100
      ||||||| ||||||||| ||| | |||||||| |||| ||| ||||||||
seq2  ACACACA-GACACACTC-GAT-CGTCTGCAGC-AAGC-TTATTGCATCTC  90

seq1  GAGCAAAAGATGATCAACTTCTGGGGAAGAGACCCAGAACACAGGAAACT  150
      |||| |||||||||| ||||||||||||||||||||||||||| ||||| 
seq2  GAGC-AAAGATGATC-ACTTCTGGGGAAGAGACCCAGAACACA-GAAAC-  136

seq1  TGGTCCTTAAATAGACCACAATAGCGGTTGGAGACATATTTCACCCTGAC  200
      |||||| | |||||||||||||||||||||||||||||||||| ||||||
seq2  TGGTCC-TCAATAGACCACAATAGCGGTTGGAGACATATTTCA-CCTGAC  184

seq1  TGGTTGCTCACCATCAGCCCAGATGACGCCACGGGACAGGCAGGGCACAA  250
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGGTTGCTCACCATCAGCCCAGATGACG-CACGGGACAGGCAGGGCACAA  233

seq1  GG-AATGGAAAAATACCCCAGCACATGCGCAGACTATTTGTTTACCATTT  299
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGGAAAAATACCCCAGCACATGCGCAGACTATTTGTTTACCATTT  283

seq1  AGAACACCAGATGTCAGCTCCATCTTGTAATGGCGCTTGCAGGGGCGGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACCAGATGTCAGCTCCATCTTGTAATGGCGCTTGCAGGGGCGGCT  333

seq1  CCTCACAGTTCAAGTTATTTTCCCAATGAATTAAGCTTTACATGCTTGTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACAGTTCAAGTTATTTTCCCAATGAATTAAGCTTTACATGCTTGTA  383

seq1  CTTGTTTTCTTTCAACTTGATTATATCAGCTTTCAGTTTGTCTATAAGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTTCTTTCAACTTGATTATATCAGCTTTCAGTTTGTCTATAAGTT  433

seq1  TTAGTTTTTATTTCTTCAAATAATTGGTTTGTATACATACATAACAGCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTTTATTTCTTCAAATAATTGGTTTGTATACATACATAACAGCTT  483

seq1  TTTGTTGTTTCCTACCAGTTAACTTTTGATTGCATATTCATGGTTTCTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGTTTCCTACCAGTTAACTTTTGATTGCATATTCATGGTTTCTGT  533

seq1  TCTCTATTTTTGTTCTCTCGTTTTTACTTGTTTTGTGAGATGATGCTTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATTTTTGTTCTCTCGTTTTTACTTGTTTTGTGAGATGATGCTTGC  583

seq1  CTGGTTAATTCTACTTTCTCCTTTTCTATTTTTTATATTAATAGCCACAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTAATTCTACTTTCTCCTTTTCTATTTTTTATATTAATAGCCACAA  633

seq1  TTTCCTGAGAATTATTTGAATTCTTTTCTATATATTTTTTTCTTTTGTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGAGAATTATTTGAATTCTTTTCTATATATTTTTTTCTTTTGTAT  683

seq1  AGTTTTGATCACTTATAAGTTAGATTTTTAAATTTTCCTTTATTTTCTGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGATCACTTATAAGTTAGATTTTTAAATTTTCCTTTATTTTCTGA  733

seq1  AAAGATTTTCATAACAAAGTTTTACCTGAAGAGGGTGTTATTCTTTGCAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTTTCATAACAAAGTTTTACCTGAAGAGGGTGTTATTCTTTGCAT  783

seq1  TGGTTGTAAATGTTAATGATTATACAATAATATGCTTAGAGAATATATAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTAAATGTTAATGATTATACAATAATATGCTTAGAGAATATATAT  833

seq1  TTACAAGATATGTGAAAAAATATCAAAATGTAGAGATCAAAAATTCAAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAGATATGTGAAAAAATATCAAAATGTAGAGATCAAAAATTCAAAG  883

seq1  AAATCAAAAATGAATATAATGTCTAATATCTATTAGGTTGCAATACAAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAAAATGAATATAATGTCTAATATCTATTAGGTTGCAATACAAAA  933

seq1  TTGTTTGTTTACTTCTGAATAACTCCTTATAACAAGGCAACTGATTTTAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTACTTCTGAATAACTCCTTATAACAAGGCAACTGATTTTAG  983

seq1  GACTTTAAACTTTAAGAAATATTACCATTATTATAGAATTTTGAAATATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTAAACTTTAAGAAATATTACCATTATTATAGAATTTTGAAATATT  1033

seq1  TTTGGCAAATTGTGCATCTGTTGTGACTTCAGGGTCAAAAATGTAATTGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCAAATTGTGCATCTGTTGTGACTTCAGGGTCAAAAATGTAATTGG  1083

seq1  TTCTATCACCCTCTCCCCTGCGGTAATGTTAGACAACTCATGACCTACCA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCACCCTCTCCCCTGCGGTAATGTTAGACAACTCATGACCTACCA  1133

seq1  ACAAGAATTC  1159
      ||||||||||
seq2  ACAAGAATTC  1143


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