BAC Information

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BAC

Clone NameB6Ng01-259J23
Chromosome4 (Build37)
Map Location 133,037,164 - 133,159,967
singlet/doubletdoublet
Overlap gene4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn
Upstream geneSesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1
Downstream geneZdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259J23.bB6Ng01-259J23.g
ACCGA064757GA064758
length4391,113
definitionB6Ng01-259J23.b B6Ng01-259J23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,037,164 - 133,037,608)(133,158,873 - 133,159,967)
sequence
tgaaataccagaggatgcccgttcttataccccattctaactgaggcctc
gggtgggagggtgagctacctaccaaaggctatccagtgaggtggaggtc
aggttcagggagggagtcctggagctccccaggaacagatggtatctgat
caacagttcctctccccccccatccccatcccaccccactccccagattc
ccaaactcaacatctagtcctgaagtccctgtataatgaaacccagaaaa
gttagctagtgctagttcctgtgtgttcctgtcaatcatggtctttccac
acaagccaggtaaagctgggctttatcattccccacccccttactacagc
cttccacagagagggagggtggctgttgggggacggtcagtcttgccctc
cctccctaggaacggggaatgaggtggagggtgtgggga
gaattctcccaacggaaagggaggagacaatgcttactgtgccaaacagt
ttgtcagtctggagaggaaagagtttggactgaggaccccgactcttctg
tggacacccggctgggccacggggtgcggagagtttaggatctttcctca
tcccatagaacccagctcaaaccccaaaacagggagggggttgctgagga
tatattcagtcggtagagttcttggaaaccctgggtataaccccggcacc
gctgctaaagcaaacatggtggcagtccatatatagaccagactgggcta
gaactcagagagatacttgcttctgcctgttaagtgttaggattacagat
gtgcacctgtctatacaggactggggagcaaactccatacacactagcag
ggactctaccaaccaagacacactcccagcctctgcttttccccagggtg
ggggtaacatgtttcccttgtggcaaagccagtcaccaactggcatgtcc
cctgtgtgagtttaaatgctcagactctagccgtacactaccgtggtctt
ccctaacttgatgttttactgtagttctgtgcctgtgccatgagttaggc
aaagcacgcaagatctcaggacagaaatcccatctgcttcctgggagaac
ctgtaaaattagccaggaccctgaagtctctcaagagcccctactccgtg
gcccaagcacattccagcctgttcagggttctggcctacaacacctctcc
cggaggcaaggcgagtgctcagacactgtgaggagacaggcaaggttgtg
caatagtcctgcttcaagggttagactggctgggtcctaggaagaaactt
cttagaaggaaccacggagtcccatctaaacttgaagaatgtggtggggg
cacataagcagggaacaccaccctcagtgcccattcttattcatggggcc
ttggaaaatagggcccaacccaatcaagggatggaagattggggaacaaa
gtgatctccattctccaaggagaacttcctctccaggggtcagaggccag
agtctggaagggaacttgagaacctctgggagccaagtgggagggaaatc
atactggcctgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_133037164_133037608
seq2: B6Ng01-259J23.b_49_493

seq1  GAATTCTGAAATACCAGAGGATGCCCGTTCTTATACCCCATTCTAACTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAAATACCAGAGGATGCCCGTTCTTATACCCCATTCTAACTGA  50

seq1  GGCCTCGGGTGGGAGGGTGAGCTACCTACCAAAGGCTATCCAGTGAGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCGGGTGGGAGGGTGAGCTACCTACCAAAGGCTATCCAGTGAGGTG  100

seq1  GAGGTCAGGTTCAGGGAGGGAGTCCTGGAGCTCCCCAGGAACAGATGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCAGGTTCAGGGAGGGAGTCCTGGAGCTCCCCAGGAACAGATGGTA  150

seq1  TCTGATCAACAGTTCCTCTCCCCCCCCATCCCCATCCCACCCCACTCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCAACAGTTCCTCTCCCCCCCCATCCCCATCCCACCCCACTCCCC  200

seq1  AGATTCCCAAACTCAACATCTAGTCCTGAAGTCCCTGTATAATGAAACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCCAAACTCAACATCTAGTCCTGAAGTCCCTGTATAATGAAACCC  250

seq1  AGAAAAGTTAGCTAGTGCTAGTTCCTGTGTGTTCCTGTCAATCATGGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGTTAGCTAGTGCTAGTTCCTGTGTGTTCCTGTCAATCATGGTCT  300

seq1  TTCCACACAAGCCAGGTAAAGCTGGGCTTTATCATTCCCCACCCCCTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACACAAGCCAGGTAAAGCTGGGCTTTATCATTCCCCACCCCCTTAC  350

seq1  TACAGCCTTCCACAGAGAGGGAGGGTGGCTGTTGGGGGACGGTCAGTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCCTTCCACAGAGAGGGAGGGTGGCTGTTGGGGGACGGTCAGTCTT  400

seq1  GCCCTCCCTCCCTAGGAACGGGGAATGAGGTGGAGGGTGTGGGGA  445
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCCCTCCCTAGGAACGGGGAATGAGGTGGAGGGTGTGGGGA  445

seq1: chr4_133158873_133159967
seq2: B6Ng01-259J23.g_67_1179 (reverse)

seq1  TCCAGCCCAGTATGA--TCCCT--CACTTGGCTCCCAGAGGTTCTCAAG-  45
      ||||| |||||||||  |||||  ||||||||||||||||||||||||| 
seq2  TCCAGGCCAGTATGATTTCCCTCCCACTTGGCTCCCAGAGGTTCTCAAGT  50

seq1  TCCCTTCAAGACTCT-GCCTCTGACCCCT-GAGA-GAAG-TCTCCTTGGA  91
      ||||||| ||||||| ||||||||||||| |||| |||| ||||||||||
seq2  TCCCTTCCAGACTCTGGCCTCTGACCCCTGGAGAGGAAGTTCTCCTTGGA  100

seq1  G-ATGGAGATCACTTTGTT-CCCAATCTTCCATCCC-TGATT-GGTTGGG  137
      | ||||||||||||||||| |||||||||||||||| ||||| |||||||
seq2  GAATGGAGATCACTTTGTTCCCCAATCTTCCATCCCTTGATTGGGTTGGG  150

seq1  CCCTATTTT-CAAGG-CCCATG-ATAAGAATGGGCACTGAGGGT-GTGTT  183
      ||||||||| ||||| |||||| ||||||||||||||||||||| |||||
seq2  CCCTATTTTCCAAGGCCCCATGAATAAGAATGGGCACTGAGGGTGGTGTT  200

seq1  -CCTGCTTATGTG-CCCCACCACATTCTTCAAGTTTAGATGGGACTCCGT  231
       |||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTTATGTGCCCCCACCACATTCTTCAAGTTTAGATGGGACTCCGT  250

seq1  GGTTCCTTCTAAAGAAGTTTCTTCCTAGGACCCAGCCAGTCTAACCCTTG  281
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTTCT-AAGAAGTTTCTTCCTAGGACCCAGCCAGTCTAACCCTTG  299

seq1  AAGCAGGACTATTGCACAACCTTGCCTGTCTCCTCACAGTGTCTGAGCAC  331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGACTATTGCACAACCTTGCCTGTCTCCTCACAGTGTCTGAGCAC  349

seq1  TCGCCTTGCCTCCGGGAGAGGTGTTGTAGGCCAGAACCCTGAACAGGCTG  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCTTGCCTCCGGGAGAGGTGTTGTAGGCCAGAACCCTGAACAGGCTG  399

seq1  GAATGTGCTTGGGCCACGGAGTAGGGGCTCTTGAGAGACTTCAGGGTCCT  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTGCTTGGGCCACGGAGTAGGGGCTCTTGAGAGACTTCAGGGTCCT  449

seq1  GGCTAATTTTACAGGTTCTCCCAGGAAGCAGATGGGATTTCTGTCCTGAG  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAATTTTACAGGTTCTCCCAGGAAGCAGATGGGATTTCTGTCCTGAG  499

seq1  ATCTTGCGTGCTTTGCCTAACTCATGGCACAGGCACAGAACTACAGTAAA  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGCGTGCTTTGCCTAACTCATGGCACAGGCACAGAACTACAGTAAA  549

seq1  ACATCAAGTTAGGGAAGACCACGGTAGTGTACGGCTAGAGTCTGAGCATT  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAAGTTAGGGAAGACCACGGTAGTGTACGGCTAGAGTCTGAGCATT  599

seq1  TAAACTCACACAGGGGACATGCCAGTTGGTGACTGGCTTTGCCACAAGGG  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTCACACAGGGGACATGCCAGTTGGTGACTGGCTTTGCCACAAGGG  649

seq1  AAACATGTTACCCCCACCCTGGGGAAAAGCAGAGGCTGGGAGTGTGTCTT  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGTTACCCCCACCCTGGGGAAAAGCAGAGGCTGGGAGTGTGTCTT  699

seq1  GGTTGGTAGAGTCCCTGCTAGTGTGTATGGAGTTTGCTCCCCAGTCCTGT  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGTAGAGTCCCTGCTAGTGTGTATGGAGTTTGCTCCCCAGTCCTGT  749

seq1  ATAGACAGGTGCACATCTGTAATCCTAACACTTAACAGGCAGAAGCAAGT  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACAGGTGCACATCTGTAATCCTAACACTTAACAGGCAGAAGCAAGT  799

seq1  ATCTCTCTGAGTTCTAGCCCAGTCTGGTCTATATATGGACTGCCACCATG  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCTGAGTTCTAGCCCAGTCTGGTCTATATATGGACTGCCACCATG  849

seq1  TTTGCTTTAGCAGCGGTGCCGGGGTTATACCCAGGGTTTCCAAGAACTCT  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTAGCAGCGGTGCCGGGGTTATACCCAGGGTTTCCAAGAACTCT  899

seq1  ACCGACTGAATATATCCTCAGCAACCCCCTCCCTGTTTTGGGGTTTGAGC  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGACTGAATATATCCTCAGCAACCCCCTCCCTGTTTTGGGGTTTGAGC  949

seq1  TGGGTTCTATGGGATGAGGAAAGATCCTAAACTCTCCGCACCCCGTGGCC  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCTATGGGATGAGGAAAGATCCTAAACTCTCCGCACCCCGTGGCC  999

seq1  CAGCCGGGTGTCCACAGAAGAGTCGGGGTCCTCAGTCCAAACTCTTTCCT  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCGGGTGTCCACAGAAGAGTCGGGGTCCTCAGTCCAAACTCTTTCCT  1049

seq1  CTCCAGACTGACAAACTGTTTGGCACAGTAAGCATTGTCTCCTCCCTTTC  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGACTGACAAACTGTTTGGCACAGTAAGCATTGTCTCCTCCCTTTC  1099

seq1  CGTTGGGAGAATTC  1095
      ||||||||||||||
seq2  CGTTGGGAGAATTC  1113