BAC Information

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BAC

Clone NameB6Ng01-259K20
Chromosome4 (Build37)
Map Location 144,615,085 - 144,771,914
singlet/doubletdoublet
Overlap geneVps13d
Upstream geneLOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3
Downstream geneTnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259K20.bB6Ng01-259K20.g
ACCGA064797GA064798
length1,1371,091
definitionB6Ng01-259K20.b B6Ng01-259K20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,770,776 - 144,771,914)(144,615,085 - 144,616,177)
sequence
gaattccaatgactacaaaatcacagagaccatctggtcctggcaaaatc
atgcccgtgctagagcacgaggcaaatcatattcatctgctgtggatgac
ccgaagcagctccacatcccacacctgggattaaaatgagaacatatata
atatttctgtgttttttaaaggaaccaaaatgccaaaattgtcatgacag
ggatcaaatccagggttttgtgtatggtgagtgatcattttaccaactga
actaaactcctctgttacattttaaaccttctttgaaaaaataaataagc
tggccatgtacctttagtctagctactcagaaggttaagacacggggata
gtatgagcccagaagcttgaggtcagcctgggcagcatagtgagacccac
gagtcaagaaaggaaaggaagtgttagtaggatgctcaggaggtaaaggc
acttgctgcaaagcgtgacgacaaggagagaactgactcctggccgccta
catatcacaccaccccctccaataaatgtaataaacttaaaaaagaagaa
atacaaaaatgcaattgacatgatataaagcttaacatatttattctctg
acccattacagacttagtaaggatcttgcctaagctcttccggcttctac
acttcagctgtcatgtgtgcttcacagtgggtggtcagatcagtcctgca
gacaaaactctctggctagtggtggtgttgccatgaccttaaccctcagt
gttctgcacgcagccggcagctcagtctttgtcggatgaacatttatctc
atgctggtttgtttttaggtgctgttgaattagaaaacctcccgttaaag
aaagatgccctgaaagaactggaattgccctttgaagtcaaagctggtac
gtggaaccgaagagggaggaaggttttggggatcaagttgtttgggacag
gagagtcaaaaggcctggagttggtattctacttgacgaggacgaggaca
ggaagtgtgagtgtttgttgtcagtgtgcatcagtctcacccaagtgcag
gtgcatcttgtgagatgaagggccacttgggtcttatatagctgtccagg
cagcagcttgccagtgagaccttatccaaactaacaa
gaattcacactgtgtccctcggctctgtcctgcctgtttccctgacccta
gcatgatactcagcaagcatgggtgccaaaggtatttggctagtgtaaca
ggatcctaggcttcagtttctccctgttctctggggctcttctttcacag
ttatttacctaatggaaagttcctccttaagatccttgcaaactgctggt
gacagtatctttcttgtcaccagggcatttcacaggaaaagagaaagaag
taacagaactctgtggcatcggggagaggttttcttttcagccaagagca
agactgtacaactgcagcatgaccagcaacagttccaagttcactcagca
gtgcccgggacacacaatcacaatggccatcgccatgctgtgctacaggc
tggcgggagttctgggtggtgctgccaacgagtccagcatgctggaacag
agcagtggcatttgtgtgtcactaacagggagagtcatctagttcatcta
gaccccagtttatccatctgcacgtctctgcttcagaagactgctctgac
gggtagcagaggtagctgaagcagagcactggacccagggactgctcatc
aattttagcaagtttctcagcagcagtttgggactttacactctagagtc
agtctcaactctgctggtgctatcgaaaaaacctccttcaggtcggttga
gacttgactcacttcaaaattaaggtcctactttcttctgtttggtatca
tgaaaacagttgcaaataaaaagcaaaacaaaccaaaccaaaccaaacca
aaccaaaacaaaacaacaaatctgttctggggctgggaattattgctcag
cggtagagcacttgcctagttcaacctgtagcattaccaccacggagaga
aggaaaggggagggcagaaagcttcccaaaatattctgggagttttgtct
tgaacattgaacccttctgaaatacttatgaacagaaagttaaaggaaat
tatgaccctaaccagtaactatctgtcactgacaaaggcaaacctgctct
gtcagttgacactgtaaggttggaccaaattggggacacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_144770776_144771914
seq2: B6Ng01-259K20.b_45_1181 (reverse)

seq1  TTGTTTGTTTGTGATAGGGTCTCACTGTGCAGGCCTGGCTGGCCTGGAAC  50
      ||||| ||||| |||| |||||||||| ||| ||   ||| |||||||  
seq2  TTGTTAGTTTG-GATAAGGTCTCACTG-GCAAGC--TGCT-GCCTGGA--  43

seq1  CAGCTATAT-AGA-CCAAGTTGGCCTTCATCTCAC-AGATGCACCTGCAC  97
      ||||||||| ||| |||||| | |||||||||||| ||||||||||||||
seq2  CAGCTATATAAGACCCAAGTGGCCCTTCATCTCACAAGATGCACCTGCAC  93

seq1  TTGGGTGAGACTGATGCACACTGAC-ACAAACACTCACACTTCCTGTCTT  146
      ||||||||||||||||||||||||| |||||||||||||||||||||| |
seq2  TTGGGTGAGACTGATGCACACTGACAACAAACACTCACACTTCCTGTCCT  143

seq1  CGTCCTCGTCAAGTAG-ATACCAACTCCAGGCCTTTTGACTCTCCTGTCC  195
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CGTCCTCGTCAAGTAGAATACCAACTCCAGGCCTTTTGACTCTCCTGTCC  193

seq1  CAAACAACTTGATCCCC-AAACCTTCCTCCCTCCTTCGGTTCCACGTACC  244
      ||||||||||||||||| |||||||||||||| |||||||||||||||||
seq2  CAAACAACTTGATCCCCAAAACCTTCCTCCCT-CTTCGGTTCCACGTACC  242

seq1  AGCTTTGACTTCAAAGGGCAATTCCAGTTCTTTCAGGGCATCTTTCTTTA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGACTTCAAAGGGCAATTCCAGTTCTTTCAGGGCATCTTTCTTTA  292

seq1  ACGGGAGGTTTTCTAATTCAACAGCACCTAAAAACAAACCAGCATGAGAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGAGGTTTTCTAATTCAACAGCACCTAAAAACAAACCAGCATGAGAT  342

seq1  AAATGTTCATCCGACAAAGACTGAGCTGCCGGCTGCGTGCAGAACACTGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTCATCCGACAAAGACTGAGCTGCCGGCTGCGTGCAGAACACTGA  392

seq1  GGGTTAAGGTCATGGCAACACCACCACTAGCCAGAGAGTTTTGTCTGCAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTAAGGTCATGGCAACACCACCACTAGCCAGAGAGTTTTGTCTGCAG  442

seq1  GACTGATCTGACCACCCACTGTGAAGCACACATGACAGCTGAAGTGTAGA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGATCTGACCACCCACTGTGAAGCACACATGACAGCTGAAGTGTAGA  492

seq1  AGCCGGAAGAGCTTAGGCAAGATCCTTACTAAGTCTGTAATGGGTCAGAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGGAAGAGCTTAGGCAAGATCCTTACTAAGTCTGTAATGGGTCAGAG  542

seq1  AATAAATATGTTAAGCTTTATATCATGTCAATTGCATTTTTGTATTTCTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATATGTTAAGCTTTATATCATGTCAATTGCATTTTTGTATTTCTT  592

seq1  CTTTTTTAAGTTTATTACATTTATTGGAGGGGGTGGTGTGATATGTAGGC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTAAGTTTATTACATTTATTGGAGGGGGTGGTGTGATATGTAGGC  642

seq1  GGCCAGGAGTCAGTTCTCTCCTTGTCGTCACGCTTTGCAGCAAGTGCCTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGAGTCAGTTCTCTCCTTGTCGTCACGCTTTGCAGCAAGTGCCTT  692

seq1  TACCTCCTGAGCATCCTACTAACACTTCCTTTCCTTTCTTGACTCGTGGG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCCTGAGCATCCTACTAACACTTCCTTTCCTTTCTTGACTCGTGGG  742

seq1  TCTCACTATGCTGCCCAGGCTGACCTCAAGCTTCTGGGCTCATACTATCC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTATGCTGCCCAGGCTGACCTCAAGCTTCTGGGCTCATACTATCC  792

seq1  CCGTGTCTTAACCTTCTGAGTAGCTAGACTAAAGGTACATGGCCAGCTTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGTCTTAACCTTCTGAGTAGCTAGACTAAAGGTACATGGCCAGCTTA  842

seq1  TTTATTTTTTCAAAGAAGGTTTAAAATGTAACAGAGGAGTTTAGTTCAGT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTTCAAAGAAGGTTTAAAATGTAACAGAGGAGTTTAGTTCAGT  892

seq1  TGGTAAAATGATCACTCACCATACACAAAACCCTGGATTTGATCCCTGTC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAAATGATCACTCACCATACACAAAACCCTGGATTTGATCCCTGTC  942

seq1  ATGACAATTTTGGCATTTTGGTTCCTTTAAAAAACACAGAAATATTATAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAATTTTGGCATTTTGGTTCCTTTAAAAAACACAGAAATATTATAT  992

seq1  ATGTTCTCATTTTAATCCCAGGTGTGGGATGTGGAGCTGCTTCGGGTCAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTCATTTTAATCCCAGGTGTGGGATGTGGAGCTGCTTCGGGTCAT  1042

seq1  CCACAGCAGATGAATATGATTTGCCTCGTGCTCTAGCACGGGCATGATTT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCAGATGAATATGATTTGCCTCGTGCTCTAGCACGGGCATGATTT  1092

seq1  TGCCAGGACCAGATGGTCTCTGTGATTTTGTAGTCATTGGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGACCAGATGGTCTCTGTGATTTTGTAGTCATTGGAATTC  1137

seq1: chr4_144615085_144616177
seq2: B6Ng01-259K20.g_69_1159

seq1  GAATTCACACTGTGTCCCTCGGCTCTGTCCTGCCTGTTTCCCTGACCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACTGTGTCCCTCGGCTCTGTCCTGCCTGTTTCCCTGACCCTA  50

seq1  GCATGATACTCAGCAAGCATGGGTGCCAAAGGTATTTGGCTAGTGTAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGATACTCAGCAAGCATGGGTGCCAAAGGTATTTGGCTAGTGTAACA  100

seq1  GGATCCTAGGCTTCAGTTTCTCCCTGTTCTCTGGGGCTCTTCTTTCACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCTAGGCTTCAGTTTCTCCCTGTTCTCTGGGGCTCTTCTTTCACAG  150

seq1  TTATTTACCTAATGGAAAGTTCCTCCTTAAGATCCTTGCAAACTGCTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTACCTAATGGAAAGTTCCTCCTTAAGATCCTTGCAAACTGCTGGT  200

seq1  GACAGTATCTTTCTTGTCACCAGGGCATTTCACAGGAAAAGAGAAAGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTATCTTTCTTGTCACCAGGGCATTTCACAGGAAAAGAGAAAGAAG  250

seq1  TAACAGAACTCTGTGGCATCGGGGAGAGGTTTTCTTTTCAGCCAAGAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGAACTCTGTGGCATCGGGGAGAGGTTTTCTTTTCAGCCAAGAGCA  300

seq1  AGACTGTACAACTGCAGCATGACCAGCAACAGTTCCAAGTTCACTCAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTACAACTGCAGCATGACCAGCAACAGTTCCAAGTTCACTCAGCA  350

seq1  GTGCCCGGGACACACAATCACAATGGCCATCGCCATGCTGTGCTACAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCGGGACACACAATCACAATGGCCATCGCCATGCTGTGCTACAGGC  400

seq1  TGGCGGGAGTTCTGGGTGGTGCTGCCAACGAGTCCAGCATGCTGGAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGGGAGTTCTGGGTGGTGCTGCCAACGAGTCCAGCATGCTGGAACAG  450

seq1  AGCAGTGGCATTTGTGTGTCACTAACAGGGAGAGTCATCTAGTTCATCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGGCATTTGTGTGTCACTAACAGGGAGAGTCATCTAGTTCATCTA  500

seq1  GACCCCAGTTTATCCATCTGCACGTCTCTGCTTCAGAAGACTGCTCTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCAGTTTATCCATCTGCACGTCTCTGCTTCAGAAGACTGCTCTGAC  550

seq1  GGGTAGCAGAGGTAGCTGAAGCAGAGCACTGGACCCAGGGACTGCTCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGCAGAGGTAGCTGAAGCAGAGCACTGGACCCAGGGACTGCTCATC  600

seq1  AATTTTAGCAAGTTTCTCAGCAGCAGTTTGGGACTTTACACTCTAGAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAGCAAGTTTCTCAGCAGCAGTTTGGGACTTTACACTCTAGAGTC  650

seq1  AGTCTCAACTCTGCTGGTGCTATCGAAAAAACCTCCTTCAGGTCGGTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCAACTCTGCTGGTGCTATCGAAAAAACCTCCTTCAGGTCGGTTGA  700

seq1  GACTTGACTCACTTCAAAATTAAGGTCCTACTTTCTTCTGTTTGGTATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGACTCACTTCAAAATTAAGGTCCTACTTTCTTCTGTTTGGTATCA  750

seq1  TGAAAACAGTTGCAAATAAAAAGCAAAACAAAACCAAACCAAACCAAACC  800
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGAAAACAGTTGCAAATAAAAAGCAAAAC-AAACCAAACCAAACCAAACC  799

seq1  AAACCAAAACAAAACAACAAATCTGTTCTGGGGCTGGGAATTATTGCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAACAAAACAACAAATCTGTTCTGGGGCTGGGAATTATTGCTCA  849

seq1  GCGGTAGAGCACTTGCCTAGGTTCAACCTGTAGCATTACCA-CACGGAGA  899
      ||||||||||||||||||| ||||||||||||||||||||| ||||||||
seq2  GCGGTAGAGCACTTGCCTA-GTTCAACCTGTAGCATTACCACCACGGAGA  898

seq1  GAAGGAAAGGGGAGGGCAGAAAGCTT-CCAAAATATTCTGGGAGTTTTGT  948
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAAGGAAAGGGGAGGGCAGAAAGCTTCCCAAAATATTCTGGGAGTTTTGT  948

seq1  CTTG-ACATTGAACCTTTCTGAAATACTTATGAACAGAAAGTTAAAGGAA  997
      |||| |||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTTGAACATTGAACCCTTCTGAAATACTTATGAACAGAAAGTTAAAGGAA  998

seq1  ATAATGACCCTAAACCAGTAACTATCTGTCACTGACAAAAGGCAAA-CTG  1046
      || |||||||| |||||||||||||||||||||||| ||||||||| |||
seq2  ATTATGACCCT-AACCAGTAACTATCTGTCACTGAC-AAAGGCAAACCTG  1046

seq1  CTCTGTCAGTTGGACAACTGTAAGGGTTGGAACAAA-TGGGGACACAC  1093
      ||||||||||| ||| ||||||| ||||||| |||| |||||||||||
seq2  CTCTGTCAGTT-GAC-ACTGTAA-GGTTGGACCAAATTGGGGACACAC  1091