BAC Information

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BAC

Clone NameB6Ng01-259M15
Chromosome4 (Build37)
Map Location 42,982,287 - 43,109,692
singlet/doubletdoublet
Overlap gene1700022I11Rik, Vcp, Fancg, Pigo, Stoml2, B230312A22Rik, Unc13b
Upstream geneLOC100042544, LOC100039848, LOC100039863, LOC100042555, 1700045I11Rik, LOC100039894, LOC100039909, EG545605, LOC674214, LOC100038965, LOC100039053, LOC100039193, LOC100039374, LOC100039930, LOC100038993, LOC100039939, Ccl19-ps3, Ccl21c, LOC100039323, LOC665845, LOC100039973, LOC100039986, 4933409K07Rik, LOC100039344, LOC100039995, EG623054, Ccl19-ps2, LOC100039331, LOC100039131, LOC100040035, LOC100040048, Il11ra2, LOC665962, LOC545614, 1700008B15Rik, Ccl19, Ccl21b, LOC100039205, LOC433698, BC049635, N28178, Dnajb5
Downstream gene4930417M19Rik, Rusc2, 4833436C18Rik, Tesk1, Cd72, Sit1, Rmrp, LOC622404, E130306D19Rik, Car9, Tpm2, Tln1, Creb3, Gba2, 1110029E03Rik, LOC100039672, LOC100040179, Npr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik, Olfr70, Olfr71, LOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268, Olfr155, Reck, Glipr2, Ccin, Clta, Gne, LOC100040313
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259M15.bB6Ng01-259M15.g
ACCGA064880GA064881
length6351,117
definitionB6Ng01-259M15.b B6Ng01-259M15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,982,287 - 42,982,921)(43,108,572 - 43,109,692)
sequence
gaattcaaggctagtgtagtctacaaagtgggtttcaggacaggcaggac
tatgaagaccctgtctcaaaaatcaaacaaacgaacaaaatctgagtttc
tacgatatttgattgaggtttcatggacaggaggtgaaaactagagtctg
gatagcatagttcaaggtttaaaatgcatgtcctggttgggcagtggtgg
tgcagcttgtattcccagcatttggaaggcagaggcaggtggatttctga
gttcgaggccagcctggtctacagagtgagttccaggacagccagggcta
cacagagaaaccctgtctcggaaaaacaaacaaacaacaacaaaagcatg
gcctaaacattcatagttctggtcttggcaatcaagacagaaagacaggg
atcactcagatttcaccatctgggatgagctgtctgatagagacaacaat
ttggctctaagctccaggagtaggctattggattcacgtaggagtcggga
gttctgtgttctatgatgcagtgatgacctcaaaaaactgccgccagact
gaagaaaatggaatggctgccataaggcttgctttagggttaaggaagat
atgggacttctccaaggtcagctgactcatgctct
gaattcccttcttggagagcttcagaagaccactcacatcctgataatga
agaggaaaaaaaaacaaaacaaaaccccactatcaccatcattctgcggc
tctgttctccccttttcggagataaggattccaggggcagttttcaccgt
gctcagctgtgcagtactggtgaggacaactttccagggtactggtcttt
aaagtaagcatccatatggaccaatactcactctcataattcctaatgac
catgtaaacagaattgaatagagctgccatgaaaatgagctgttcctctg
actagagtcatagagacttagaactcaaagaaatacagagaaatacagaa
agtcaatgccctcgatttccccacttccagagaaagtttctagtgctcag
tcaatctgaacagtcacttctatgtaagtacagagccaatggggaaatag
tgatactcagtagaatctgggaaagtgaactaaaattcaatctgaaaatg
agtaggcacaatataaatacctaccaagtacatcagtaattctgtaaatt
ccaatagtgttatacatagaagaaatctgaaaccagttgcatggggagta
gcttagaaaaataggccccaaaatagtatccagccaattggctaaggaag
tttaatggtggtcttcccaggacagtgtctaagatgagaattagagacca
tatacacattcctcagacaagactatctttctgataggactaaaaggtgc
tgaggaatctccaagatcagccagtgggtatagggaagagcagctttcag
acaacccctaagcctttgggagaggtgagaatggtgagggcatgtgtcct
ctacctagaaaagatagatctgcatggataaatatcagctgaagtggagc
taagataagggaaggcagaggcggcaaccattcttccaaacaaggcagca
cactaacctcatccgactgacggattgtcttcagtgcaatccacacggtg
cccacattgtgtccatatcagtccctttgtccaccactccacacttagcc
caggtccagacgactgatctcacttatggggaaaaaaaaggagtcttgag
ggaagcctagataacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_42982287_42982921
seq2: B6Ng01-259M15.b_47_681

seq1  GAATTCAAGGCTAGTGTAGTCTACAAAGTGGGTTTCAGGACAGGCAGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCTAGTGTAGTCTACAAAGTGGGTTTCAGGACAGGCAGGAC  50

seq1  TATGAAGACCCTGTCTCAAAAATCAAACAAACGAACAAAATCTGAGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGACCCTGTCTCAAAAATCAAACAAACGAACAAAATCTGAGTTTC  100

seq1  TACGATATTTGATTGAGGTTTCATGGACAGGAGGTGAAAACTAGAGTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGATATTTGATTGAGGTTTCATGGACAGGAGGTGAAAACTAGAGTCTG  150

seq1  GATAGCATAGTTCAAGGTTTAAAATGCATGTCCTGGTTGGGCAGTGGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCATAGTTCAAGGTTTAAAATGCATGTCCTGGTTGGGCAGTGGTGG  200

seq1  TGCAGCTTGTATTCCCAGCATTTGGAAGGCAGAGGCAGGTGGATTTCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTTGTATTCCCAGCATTTGGAAGGCAGAGGCAGGTGGATTTCTGA  250

seq1  GTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTA  300

seq1  CACAGAGAAACCCTGTCTCGGAAAAACAAACAAACAACAACAAAAGCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGAAACCCTGTCTCGGAAAAACAAACAAACAACAACAAAAGCATG  350

seq1  GCCTAAACATTCATAGTTCTGGTCTTGGCAATCAAGACAGAAAGACAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAACATTCATAGTTCTGGTCTTGGCAATCAAGACAGAAAGACAGGG  400

seq1  ATCACTCAGATTTCACCATCTGGGATGAGCTGTCTGATAGAGACAACAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTCAGATTTCACCATCTGGGATGAGCTGTCTGATAGAGACAACAAT  450

seq1  TTGGCTCTAAGCTCCAGGAGTAGGCTATTGGATTCACGTAGGAGTCGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTCTAAGCTCCAGGAGTAGGCTATTGGATTCACGTAGGAGTCGGGA  500

seq1  GTTCTGTGTTCTATGATGTAGTGATGACCTCAAGAAACTGCCGCCAGACT  550
      |||||||||||||||||| |||||||||||||| ||||||||||||||||
seq2  GTTCTGTGTTCTATGATGCAGTGATGACCTCAAAAAACTGCCGCCAGACT  550

seq1  GAAGAAAATGGAATGGCTGCCAGAAGGCTTGCTTTAGGGCTAAGGAAGAT  600
      |||||||||||||||||||||| |||||||||||||||| ||||||||||
seq2  GAAGAAAATGGAATGGCTGCCATAAGGCTTGCTTTAGGGTTAAGGAAGAT  600

seq1  ATGGGACTTCTCCAAGGTCAGCTGACCCATGCTCT  635
      |||||||||||||||||||||||||| ||||||||
seq2  ATGGGACTTCTCCAAGGTCAGCTGACTCATGCTCT  635

seq1: chr4_43108572_43109692
seq2: B6Ng01-259M15.g_67_1183 (reverse)

seq1  CTGTTATCTA-GCTCTCCTCAAAGGACTCCTTTTTTTTCCCCATTAGTGA  49
      |||||||||| |||  ||||||  |||||||||||||||||||| |||||
seq2  CTGTTATCTAGGCTTCCCTCAA--GACTCCTTTTTTTTCCCCATAAGTGA  48

seq1  GATCAGTCGTCTGGACCTGGGCCTAAGTGTGGAGGTGTGGAACAAGGGAC  99
      ||||||||||||||||||||| ||||||||||||  |||||  |||||||
seq2  GATCAGTCGTCTGGACCTGGG-CTAAGTGTGGAGTGGTGGACAAAGGGAC  97

seq1  TGATATGGGACACAATGGTGGGCACCGTGTGGATTGCACTGAAGACAATC  149
      |||||| ||||||||| |||||||||||||||||||||||||||||||||
seq2  TGATAT-GGACACAAT-GTGGGCACCGTGTGGATTGCACTGAAGACAATC  145

seq1  CGTCAGTCGGATGAGGTTAGTGTGCTGCC-TGTTTGGAAGAATGGTTGCC  198
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CGTCAGTCGGATGAGGTTAGTGTGCTGCCTTGTTTGGAAGAATGGTTGCC  195

seq1  GCCTCTGCCTTCCCTTATCTTAGCTCCACTTCAGCTGATATTTATCCATG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGCCTTCCCTTATCTTAGCTCCACTTCAGCTGATATTTATCCATG  245

seq1  CAGATCTATCTTTTCTAGGTAGAGGACACATGCCCTCACCATTTCTCACC  298
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CAGATCTATCTTTTCTAGGTAGAGGACACATGCCCTCACCA-TTCTCACC  294

seq1  TCTCCCAAAGGCTTAGGGGTTGTCTGAAAGCTGCTCTTCCCTATACCCAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCAAAGGCTTAGGGGTTGTCTGAAAGCTGCTCTTCCCTATACCCAC  344

seq1  TGGCTGATCTTGGAGATTCCTCAGCACCTTTTAGTCCTATCAGAAAGATA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGATCTTGGAGATTCCTCAGCACCTTTTAGTCCTATCAGAAAGATA  394

seq1  GTCTTGTCTGAGGAATGTGTATATGGTCTCTAATTCTCATCTTAGACACT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGTCTGAGGAATGTGTATATGGTCTCTAATTCTCATCTTAGACACT  444

seq1  GTCCTGGGAAGACCACCATTAAACTTCCTTAGCCAATTGGCTGGATACTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGGAAGACCACCATTAAACTTCCTTAGCCAATTGGCTGGATACTA  494

seq1  TTTTGGGGCCTATTTTTCTAAGCTACTCCCCATGCAACTGGTTTCAGATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGGCCTATTTTTCTAAGCTACTCCCCATGCAACTGGTTTCAGATT  544

seq1  TCTTCTATGTATAACACTATTGGAATTTACAGAATTACTGATGTACTTGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTATGTATAACACTATTGGAATTTACAGAATTACTGATGTACTTGG  594

seq1  TAGGTATTTATATTGTGCCTACTCATTTTCAGATTGAATTTTAGTTCACT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATTTATATTGTGCCTACTCATTTTCAGATTGAATTTTAGTTCACT  644

seq1  TTCCCAGATTCTACTGAGTATCACTATTTCCCCATTGGCTCTGTACTTAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGATTCTACTGAGTATCACTATTTCCCCATTGGCTCTGTACTTAC  694

seq1  ATAGAAGTGACTGTTCAGATTGACTGAGCACTAGAAACTTTCTCTGGAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGTGACTGTTCAGATTGACTGAGCACTAGAAACTTTCTCTGGAAG  744

seq1  TGGGGAAATCGAGGGCATTGACTTTCTGTATTTCTCTGTATTTCTTTGAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAATCGAGGGCATTGACTTTCTGTATTTCTCTGTATTTCTTTGAG  794

seq1  TTCTAAGTCTCTATGACTCTAGTCAGAGGAACAGCTCATTTTCATGGCAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGTCTCTATGACTCTAGTCAGAGGAACAGCTCATTTTCATGGCAG  844

seq1  CTCTATTCAATTCTGTTTACATGGTCATTAGGAATTATGAGAGTGAGTAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTCAATTCTGTTTACATGGTCATTAGGAATTATGAGAGTGAGTAT  894

seq1  TGGTCCATATGGATGCTTACTTTAAAGACCAGTACCCTGGAAAGTTGTCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCATATGGATGCTTACTTTAAAGACCAGTACCCTGGAAAGTTGTCC  944

seq1  TCACCAGTACTGCACAGCTGAGCACGGTGAAAACTGCCCCTGGAATCCTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGTACTGCACAGCTGAGCACGGTGAAAACTGCCCCTGGAATCCTT  994

seq1  ATCTCCGAAAAGGGGAGAACAGAGCCGCAGAATGATGGTGATAGTGGGGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCGAAAAGGGGAGAACAGAGCCGCAGAATGATGGTGATAGTGGGGT  1044

seq1  TTTGTTTTGTTTTTTTTTCCTCTTCATTATCAGGATGTGAGTGGTCTTCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTTTTTTTTTCCTCTTCATTATCAGGATGTGAGTGGTCTTCT  1094

seq1  GAAGCTCTCCAAGAAGGGAATTC  1121
      |||||||||||||||||||||||
seq2  GAAGCTCTCCAAGAAGGGAATTC  1117