BAC Information

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BAC

Clone NameB6Ng01-260N10
Chromosome4 (Build37)
Map Location 152,877,202 - 153,084,966
singlet/doubletdoublet
Overlap genenone
Upstream geneNphp4, LOC667039, Gm833, LOC100042089, Ajap1
Downstream geneBC039966, A430005L14Rik, Dffb, BC046331, Lrrc47, 1190007F08Rik, Ccdc27, Trp73, Wdr8, 1200015A19Rik, Megf6, Arhgef16, Prdm16, LOC100043342, LOC100042178, Actrt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260N10.bB6Ng01-260N10.g
ACCGA065661GA065662
length1,1021,107
definitionB6Ng01-260N10.b B6Ng01-260N10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(153,083,954 - 153,084,966)(152,877,202 - 152,878,315)
sequence
gaattcaggatggcaagaatgtagaacacacaccaagaaaagccgcaggc
catgagcagagcagacccagggcagaggccatggagagaggttgcatggg
cttcgagcagcaaggacagggtgggaagccccagggtccacaccactcac
agtgtgcatctgctgctgcacagagagctacggggtgggtgcagggtttg
ctctctgtgtctggcctcactttgggcatagacttcacagggcacctgtc
tgtcctgtccctcgtttggggatgggcaatgtttatttcttgcctttgca
ttgaacagcctgctctgagatgtgtgagtgcacacaccattgtgtgtttg
ccttgagtctcagagcagacttgggctgaggattgctggctgacttgggg
ttgtgacgatttgggggctgttcagaaccaaattcacccagtgtcagggg
cagacaggcagttgtgaaatctggggcagaaacttgaaccttggattcta
aatccacgagagacagcttggcctacaggtcagtgtaacactggagggag
ggctgtctgcaccgagtgggcactccagtttgtctcttctacatttcttt
agctcttccttctctctatttctctctcttctcagtctctgtctctctct
tctgtctctgtctctctcttctgtctctgtctctcctctctctgtctctc
ccttctgcctctctgtctctgtctctctgtctctcctctgtttcttccct
ctgcctttctcccctttatctctgtctctcagtctctctctatctctgtt
tctcactgtctctctcctctatttctgtctctcccctctctgtctgtctc
tctctatgtctctgtctatgtctcttcccctccccttgttctctcctcta
tctcttttctacatctctgtctctccccccccaccccgttctcttcctct
agcctctataaggtgagcagcttttaccttgactgtctcatgctcaaagc
aaaaatctgagtagggagggggttgggctcttgactctgtgagtcaatta
acttccttcctttactcaaggcatctgtacagtgaacagcaagaagtgag
gc
gaattcttgctggcgagatactagctcaggatgttgatgagcaaaaatgt
tcatctcctgtcaggaaagactcgggatgtgtctctgaggatagggctga
ggacaggctcctctctccctcacagaatccttggttccactcaggaaaag
aagagctcatgactctttgagtgttgatgtgccagacaggctgtgttttc
tgattcaattttcctaacaactcgacgagaggcggctcatatgtctagtt
gatttcagaaactcaattgagtgtagttaagtaactttccctaaatcata
cgactggtggtatttgacaccattctgtctgattctaaaatttattcttg
ttattttttttttttctcctagcagcctggttttgcttctgaaggctttg
aagaaccttcatgcctgggcgtgacctaaggccacagagatgtccagggg
tagaacagaaaggaaactcatgaattctcagacaatcctagctggccatg
tgcacgtctgaagtgtcccaccatcctagttcagtttatgttggtgtgat
aaatggcgtgaccagaagcagcttggggaaaaatggtttatttttgctta
tgacccatagtccatcaaggagggaagccagcataagaacgtaaaagtcc
ggaacctggaagcaggaactgaagcatagaccacggaggacttctattta
ccagcttggccttcatgacgtctcagcccaaggccagcagcgtccgatgg
gcctggtccttctaaacccagtacaatcaagaaaatgctccagagacctt
cctataggccagtcttcagaggcaactcctccactgacgtctgcccttcc
caggtggactgtagtctatgacaaattgacaaaaataaaaaataaaaaat
aacgagctcatccaggaacatcgagcacaaatgacctgacctcacagaag
ccatcccagagcagttattttgcatttgcttttctagcaagaaaaaaatg
aagtggtgcttcattgtcccatttgaggaacaaagctgccaatggcttaa
gtgggaaggcctgaatcttgcattcggcccttccttctcccatggaagaa
ctagcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_153083954_153084966
seq2: B6Ng01-260N10.b_133_1152 (reverse)

seq1  GCCTCAC-TCTTGCTG-TCACTGTTACAGATGCC-TGAGTTAAGGAAGG-  46
      ||||||| |||||||| |||||| |||||||||| ||||| |||||||| 
seq2  GCCTCACTTCTTGCTGTTCACTG-TACAGATGCCTTGAGTAAAGGAAGGA  49

seq1  AGTTATTTGACTCACAGAGTC-AGAGGCCAACCCCCTCCCTACTCAGATT  95
      ||||| ||||||||||||||| |||| |||||||||||||||||||||||
seq2  AGTTAATTGACTCACAGAGTCAAGAGCCCAACCCCCTCCCTACTCAGATT  99

seq1  TTTGCTTTGAGCATGAGACAGTCAAGGT-AAAGCTGCTCACCTTATAGAG  144
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTGCTTTGAGCATGAGACAGTCAAGGTAAAAGCTGCTCACCTTATAGAG  149

seq1  GCTAGAGG-AGAGAACGGGGTGGGGGGGGAGAGACAGAGATGTAG-AAAG  192
      |||||||| |||||||||||||||||||||||||||||||||||| ||||
seq2  GCTAGAGGAAGAGAACGGGGTGGGGGGGGAGAGACAGAGATGTAGAAAAG  199

seq1  AGATAGAGGAGAGAACAAGGGGAGGGGAAGAGACATAGACAGAGACATAG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGAGGAGAGAACAAGGGGAGGGGAAGAGACATAGACAGAGACATAG  249

seq1  AGAGAGACAGACAGAGAGGGGAGAGACAGAAATAGAGGAGAGAGACAGTG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGACAGACAGAGAGGGGAGAGACAGAAATAGAGGAGAGAGACAGTG  299

seq1  AGAAACAGAGATAGAGAGAGACTGAGAGACAGAGATAAAGGGGAGAAAGG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGAGATAGAGAGAGACTGAGAGACAGAGATAAAGGGGAGAAAGG  349

seq1  CAGAGGGAAGAAACAGAGGAGAGACAGAGAGACAGAGACAGAGAGGCAGA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGAAGAAACAGAGGAGAGACAGAGAGACAGAGACAGAGAGGCAGA  399

seq1  AGGGAGAGACAGAGAGAGGAGAGACAGAGACAGAAGAGAGAGACAGAGAC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAGACAGAGAGAGGAGAGACAGAGACAGAAGAGAGAGACAGAGAC  449

seq1  AGAAGAGAGAGACAGAGACTGAGAAGAGAGAGAAATAGAGAGAAGGAAGA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGAGAGACAGAGACTGAGAAGAGAGAGAAATAGAGAGAAGGAAGA  499

seq1  GCTAAAGAAATGTAGAAGAGACAAACTGGAGTGCCCACTCGGTGCAGACA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAGAAATGTAGAAGAGACAAACTGGAGTGCCCACTCGGTGCAGACA  549

seq1  GCCCTCCCTCCAGTGTTACACTGACCTGTAGGCCAAGCTGTCTCTCGTGG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCCCTCCAGTGTTACACTGACCTGTAGGCCAAGCTGTCTCTCGTGG  599

seq1  ATTTAGAATCCAAGGTTCAAGTTTCTGCCCCAGATTTCACAACTGCCTGT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGAATCCAAGGTTCAAGTTTCTGCCCCAGATTTCACAACTGCCTGT  649

seq1  CTGCCCCTGACACTGGGTGAATTTGGTTCTGAACAGCCCCCAAATCGTCA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCTGACACTGGGTGAATTTGGTTCTGAACAGCCCCCAAATCGTCA  699

seq1  CAACCCCAAGTCAGCCAGCAATCCTCAGCCCAAGTCTGCTCTGAGACTCA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCAAGTCAGCCAGCAATCCTCAGCCCAAGTCTGCTCTGAGACTCA  749

seq1  AGGCAAACACACAATGGTGTGTGCACTCACACATCTCAGAGCAGGCTGTT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAACACACAATGGTGTGTGCACTCACACATCTCAGAGCAGGCTGTT  799

seq1  CAATGCAAAGGCAAGAAATAAACATTGCCCATCCCCAAACGAGGGACAGG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCAAAGGCAAGAAATAAACATTGCCCATCCCCAAACGAGGGACAGG  849

seq1  ACAGACAGGTGCCCTGTGAAGTCTATGCCCAAAGTGAGGCCAGACACAGA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGGTGCCCTGTGAAGTCTATGCCCAAAGTGAGGCCAGACACAGA  899

seq1  GAGCAAACCCTGCACCCACCCCGTAGCTCTCTGTGCAGCAGCAGATGCAC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAACCCTGCACCCACCCCGTAGCTCTCTGTGCAGCAGCAGATGCAC  949

seq1  ACTGTGAGTGGTGTGGACCCTGGGGCTTCCCACCCTGTCCTTGCTGCTCG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGAGTGGTGTGGACCCTGGGGCTTCCCACCCTGTCCTTGCTGCTCG  999

seq1  AAGCCCATGCAACCTCTCTCC  1013
      |||||||||||||||||||||
seq2  AAGCCCATGCAACCTCTCTCC  1020

seq1: chr4_152877202_152878315
seq2: B6Ng01-260N10.g_68_1173

seq1  GAATTCTTGCTGGCGAGATACTAGCTCAGGATGTTGATGAGCAAAAATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCTGGCGAGATACTAGCTCAGGATGTTGATGAGCAAAAATGT  50

seq1  TCATCTCCTGTCAGGAAAGACTCGGGATGTGTCTCTGAGGATAGGGCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCCTGTCAGGAAAGACTCGGGATGTGTCTCTGAGGATAGGGCTGA  100

seq1  GGACAGGCTCCTCTCTCCCTCACAGAATCCTTGGTTCCACTCAGGAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGCTCCTCTCTCCCTCACAGAATCCTTGGTTCCACTCAGGAAAAG  150

seq1  AAGAGCTCATGACTCTTTGAGTGTTGATGTGCCAGACAGGCTGTGTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTCATGACTCTTTGAGTGTTGATGTGCCAGACAGGCTGTGTTTTC  200

seq1  TGATTCAATTTTCCTAACAACTCGACGAGAGGCGGCTCATATGTCTAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCAATTTTCCTAACAACTCGACGAGAGGCGGCTCATATGTCTAGTT  250

seq1  GATTTCAGAAACTCAATTGAGTGTAGTTAAGTAACTTTCCCTAAATCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAGAAACTCAATTGAGTGTAGTTAAGTAACTTTCCCTAAATCATA  300

seq1  CGACTGGTGGTATTTGACACCATTCTGTCTGATTCTAAAATTTATTCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTGGTGGTATTTGACACCATTCTGTCTGATTCTAAAATTTATTCTTG  350

seq1  TTATTTTTTTTTTTTCTCCTAGCAGCCTGGTTTTGCTTCTGAAGGCTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTTTTTTTCTCCTAGCAGCCTGGTTTTGCTTCTGAAGGCTTTG  400

seq1  AAGAACCTTCATGCCTGGGCGTGACCTAAGGCCACAGAGATGTCCAGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCTTCATGCCTGGGCGTGACCTAAGGCCACAGAGATGTCCAGGGG  450

seq1  TAGAACAGAAAGGAAACTCATGAATTCTCAGACAATCCTAGCTGGCCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACAGAAAGGAAACTCATGAATTCTCAGACAATCCTAGCTGGCCATG  500

seq1  TGCACGTCTGAAGTGTCCCACCATCCTAGTTCAGTTTATGTTGGTGTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGTCTGAAGTGTCCCACCATCCTAGTTCAGTTTATGTTGGTGTGAT  550

seq1  AAATGGCGTGACCAGAAGCAGCTTGGGGAAAAATGGTTTATTTTTGCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCGTGACCAGAAGCAGCTTGGGGAAAAATGGTTTATTTTTGCTTA  600

seq1  TGACCCATAGTCCATCAAGGAGGGAAGCCAGCATAAGAACGTAAAAGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCATAGTCCATCAAGGAGGGAAGCCAGCATAAGAACGTAAAAGTCC  650

seq1  GGAACCTGGAAGCAGGAACTGAAGCATAGACCACGGAGGACTTCTATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCTGGAAGCAGGAACTGAAGCATAGACCACGGAGGACTTCTATTTA  700

seq1  CCAGCTTGGCCTTCATGACGTCTCAGCCCAAGGCCAGCAGCGTCCGATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTGGCCTTCATGACGTCTCAGCCCAAGGCCAGCAGCGTCCGATGG  750

seq1  GCCTGGTCCTTCTAAACCCAGTACAATCAAGAAAATGCTCCAGAGACCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTCCTTCTAAACCCAGTACAATCAAGAAAATGCTCCAGAGACCTT  800

seq1  CCTATAGGCCAGTCTTCAGAGGCAACTCCTCCACTGACGTCTGCCCTTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAGGCCAGTCTTCAGAGGCAACTCCTCCACTGACGTCTGCCCTTCC  850

seq1  CAGGTGGACTGTAGTCTATGACAAATTGACAAAAATAAAAAAATAAAAAA  900
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CAGGTGGACTGTAGTCTATGACAAATTGACAAAAAT-AAAAAATAAAAAA  899

seq1  TAACGAGCTCATCCAGGAACATCGAGCACAAATGACCTGA-CTCACAGAA  949
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TAACGAGCTCATCCAGGAACATCGAGCACAAATGACCTGACCTCACAGAA  949

seq1  GCCATCCCAGAGCAGTTA-TTTGCATTTTGCTTTTCTAGCAAGAAAAAAA  998
      |||||||||||||||||| |||||| ||||||||||||||||||||||||
seq2  GCCATCCCAGAGCAGTTATTTTGCA-TTTGCTTTTCTAGCAAGAAAAAAA  998

seq1  TGAAGT-GTGCTTCATTTTGTCCCAATTTTGAGGAACAAAGGCTGCAAAA  1047
      |||||| ||||||||  ||||||||  ||||||||||||| ||||| || 
seq2  TGAAGTGGTGCTTCA--TTGTCCCA--TTTGAGGAACAAA-GCTGCCAAT  1043

seq1  GGGCTTTAAGTGGGGAAGGGCTGGGAATCCTGCATTCGGGCCCTTCCTTC  1097
      ||   |||||| ||||||| ||  ||||| ||||||| ||||||||||||
seq2  GG--CTTAAGT-GGGAAGGCCT--GAATCTTGCATTC-GGCCCTTCCTTC  1087

seq1  -CCCATGG-AGAACCAGCT  1114
       ||||||| ||||| ||||
seq2  TCCCATGGAAGAACTAGCT  1106