BAC Information

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BAC

Clone NameB6Ng01-263H21
Chromosome4 (Build37)
Map Location 88,355,767 - 88,485,300
singlet/doubletdoublet
Overlap geneKlhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5
Upstream geneMllt3, BC057079, Ptplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835
Downstream geneIfna4, Ifna1, Ifne1, LOC100040617, Mtap, LOC625574, Cdkn2a, Cdkn2b, LOC664785, Dmrta1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263H21.bB6Ng01-263H21.g
ACCGA067646GA067647
length1,1081,185
definitionB6Ng01-263H21.b B6Ng01-263H21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,475,864 - 88,485,300)(88,355,767 - 88,356,963)
sequence
gaattcctaccctgtggttggttgtctcagtttcacaatgcttttcctac
tgatcaaaagggtgtgagtttgtctgcgaatccctactacttgactgcac
acagactcctcattcttgagatcactttgttataggaggatagagggaaa
ggacacaaaagaccttgctatgcatagttatctgtgcattgctcaaaaga
cacggcctggggaaccgagaaggtttcccttctgaagatgaatttgaagg
gaacaaactcttcctgaagtcagttcatcttgagaaaagtgtgtttccat
gaggaggaaactctgccagaaaacaattctgtaaagaacttgacagagtt
ggattaggtttgttcattgcaggccaggccagtaggtggagcacttcttc
tctaaaactttctaataattgaatattcggtttccttttcctttctctct
ttatatcctttcttctttctttcctcctttctcctttcttccttccttct
atccttcctctttactccatttgctcagaacttccttcctttcttttttc
tgtctttcatcttttttttgtttttcttcttttttgttaaagcagaaagc
attaggtctctagaaggtaattgtctaaggtctaaaattaagaggaaatt
cttatacatgagagattcattcaaaccttgaactctttcattctggtttt
cacagtggtcatgtgttttcaaaaataaaagctccagtcaggaatcaaga
tgaaacagacagcagctgtacggtgagcagcgctgggtaatgcggagaga
atgaggagcacacggtagggctttctgcatcaggggagggggagacaaga
actgaagacactaaaagatggggtctgtgacagcagggaggtactggggt
ctatcagagaggaagctgtgtgtgtgcacataggaacatatacatttaca
catatatatgcatatataaaattaatggtatatacatcatatatacagga
tatcattatatgatatatacatttattctgtagtctactttcagtatcag
tgtaacacactggtgcccatataatattatttggtcagcatccattcctt
atggaata
gaattcagatcttcatacttgctcaccaaactctctgccccatgtagctg
ggcagtgatggtgcacacctttaatcctagcacttgggaggcagaggcag
gtggatttctaaattcgaggccagcctgggtctacagagtgagttccagg
acagccaaggctacacagagaaaaaaaaaaaaaaaaaaaaaaaaggaaag
attaatgaaatgcaaactatgtgtttagttcatagaatcaaagcacactc
agtattcatgttaagcataaggaatatatacaaattatccaatggtaggc
caatgcatgtgaggagagagacaaaaatccaaaacaggaaaatctcagtc
ttctactgtctgtcattttagcattaatcttgtacacattttatttatgt
tctatgaattcaatgtcaatggttctcacaggatatacaagatgtaaaac
acgttttaaagaaatagtaagactgtgttagagttgagctttagaggcct
atcaatcattataataacccagattattttcagtcccacacaaccaatct
cctatcacatggaagaaatattattcccagtgatcatactcaatagagag
atctcattgaattttttaaacttgcattagaattcacattcctcaagaat
tttcagcaatcaactcctagttaattttaataaataatagaaaagtgatg
ttaatgctacatgtcaataatgggatccagatataacaagataaatagct
agctggacagtagccttatacaacatgtaggtggcagacattcttgtttc
tcattgccttctttatagaaagcaaaacatctctgcaccccaatgactga
ggacaagaagaaaacaaaagtgcatctaaatgtaatgaaaaaaggagcca
agggaggtgacatcccactggcaaacagtgaaaaagtgtaagcagccagt
ctccagcagatggagggtagaaataagatagagcagagcagatggccaaa
gggcagagctctagacagcacagaggctgccaagcagtcactcctagctc
ttcagcttgctaaatctggcttcacagaagccttcaggaagtcatgctgg
ctaacacgaaagaactatacagcaaaatctgaacacctctgctgacaggg
tttaataatatccaggttctcccctaataaacggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_88475864_88485300
seq2: B6Ng01-263H21.b_52_1159 (reverse)

seq1  TATTCAATAAGAATTGATGACTGACAAATATATTATATGGGGACCAGTGT  50
                                                        
seq2  --------------------------------------------------  0

seq1  GTTAAACTGAAACTGAAAGTGGAATTACAGATATATGTATATATTATATA  100
                                                        
seq2  --------------------------------------------------  0

seq1  TGATGTCCTGTATATATGTTTTATATACTATTAATTATATATGTGTACAT  150
                                                        
seq2  --------------------------------------------------  0

seq1  ATGTGTGCACACACAGCTTTCTCTCTGATAGACTCCCAGTACCTCCCTGC  200
                                                        
seq2  --------------------------------------------------  0

seq1  TGTCCCAGACCCCAACGTTCAGTGTCACTGTCTTTGTCTCCCCCTCCCTG  250
                                                        
seq2  --------------------------------------------------  0

seq1  ATGTAGGAAGCCCCCGTGTGTGCTCCTCATTCTCTCTGCATTACCCAGCT  300
                                                        
seq2  --------------------------------------------------  0

seq1  CTCCTCACTGTACAGCTGCTGTCTGTTTCATCTTGATTCCTGACTGGAGT  350
                                                        
seq2  --------------------------------------------------  0

seq1  TTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTGTTTTTGTTTGTTTGTT  400
                                                        
seq2  --------------------------------------------------  0

seq1  TGTTTTTCTGAAAACACATGACCACTGTGGAAACCAGAATGAATGAGTTC  450
                                                        
seq2  --------------------------------------------------  0

seq1  AAGGCTTCAATGAAACTTTCATATATGAGAATTTCCTCTTAATTTTAGAC  500
                                                        
seq2  --------------------------------------------------  0

seq1  TTTAGAAAATATTCTTCTAATGACCTAATACTGATTATTTCATCAAAGGA  550
                                                        
seq2  --------------------------------------------------  0

seq1  AAAGAAAAACAAGGGAATAAAGGAGAAAGTCAGAAAAGAAAAAGAAGATG  600
                                                        
seq2  --------------------------------------------------  0

seq1  AAGGAAAGAAAAAAAAGGAAGTAAGGAAGGGAGGGAGGGACGGAGGGAGG  650
                                                        
seq2  --------------------------------------------------  0

seq1  TAGGAGTGGGGGGAAAAGAAGAAAGTTAAAAAAAAAGAAAAAAAGAAAGG  700
                                                        
seq2  --------------------------------------------------  0

seq1  AAAAGGAAACCAAATCTTCAATCATGAGAAAAATTTAGAGACGAAGAGAG  750
                                                        
seq2  --------------------------------------------------  0

seq1  CCACCTACTGGCCAGGCCTGCAAAGAACAAACAGGAAAGTTCCTCATGAA  800
                                                        
seq2  --------------------------------------------------  0

seq1  TTCTATTTCCTGGCACTTTCCTCCAAACTAAAATACACTTTCCCCAGATA  850
                                                        
seq2  --------------------------------------------------  0

seq1  AGCTGACTTCAGGAAGACTTCATTCCCTTCAAACTCATCTTCGGAAGGGA  900
                                                        
seq2  --------------------------------------------------  0

seq1  AACTCTCTCGGTTCCCCAGGTCATATCTTCTGGACAATGGACAGATAATT  950
                                                        
seq2  --------------------------------------------------  0

seq1  ATGCATAACAAGGTCTTTTGTGTCCTTTCCCTCTATCCTCCTATAACCGA  1000
                                                        
seq2  --------------------------------------------------  0

seq1  AGTGATCTCGAGAAGGAGGTGCCTGTGTGCGATCCCTCTAGTAAGGATTC  1050
                                                        
seq2  --------------------------------------------------  0

seq1  ACAGCCAAACTCACATCATTTTGATCAGTAGGTAATGCTCTGTGAAATTG  1100
                                                        
seq2  --------------------------------------------------  0

seq1  AGACAACCAACTCTGAGCTAGGAATTCTGTAAGATTGCATGTGAACCCAT  1150
                                                        
seq2  --------------------------------------------------  0

seq1  AGAAAAGACTCTTCACCCTGCTTTGCCTGCTGAGGCCAGCAACAGTGGGT  1200
                                                        
seq2  --------------------------------------------------  0

seq1  TTGGCAAATGCACTGATTTATGACTGTCTTTTGATCTGTGATCTCAATAG  1250
                                                        
seq2  --------------------------------------------------  0

seq1  CTCAGGTAATTACACAATGTCACATGCACATGGAACAATGTGAATCTGTG  1300
                                                        
seq2  --------------------------------------------------  0

seq1  TTCCAGGCCATAGTCAGTCTACACTGAAGCAGAATAGCTTAGTTCATATT  1350
                                                        
seq2  --------------------------------------------------  0

seq1  TCTACTGGATCAAGATCTGTGATTTGCAGGTGCATGGCTCAACATATCAG  1400
                                                        
seq2  --------------------------------------------------  0

seq1  GGCTCTTGAGCCCTCAGCCTCTTTGAGTTTTGAAGGACACTTGAACAGAA  1450
                                                        
seq2  --------------------------------------------------  0

seq1  ACACACAATGTGTATCTGTACATAGACCTGCCAAGAAAAGGCTAGAACTT  1500
                                                        
seq2  --------------------------------------------------  0

seq1  CAGTTCCTTCTTAAGAAAGATTTCTCTGTCTCTTTGGAAGGAGAAAATGC  1550
                                                        
seq2  --------------------------------------------------  0

seq1  CCACATGAGTATTGCCATGTCTGAGTCCTCACAGGGAACAGAGGAATAAG  1600
                                                        
seq2  --------------------------------------------------  0

seq1  AAAAAAATATATATGATAGGGAAGTATGTTGGTGATTTGTATATTTGCAG  1650
                                                        
seq2  --------------------------------------------------  0

seq1  AAAATCAAGTGATATCAAGGTGAGTTGCAGTGGTAAAGATCTGGTAATTG  1700
                                                        
seq2  --------------------------------------------------  0

seq1  AAGTAGACTTTGTTGGGGGTTTTAATTACTGGAAAAACAGCTATTGGTGT  1750
                                                        
seq2  --------------------------------------------------  0

seq1  GACTACTAAACATGTTTCAGATATGACTTCCTGTAATGTTTCTTTGGCAG  1800
                                                        
seq2  --------------------------------------------------  0

seq1  TTATTTTTACTGTTAGCTTTCATGGTTAAATAATAATAAAAAATATGAAC  1850
                                                        
seq2  --------------------------------------------------  0

seq1  TAGGTCCAGATATGAAACTGCTCAAAAAATATGTTGTGTTTTACAGCGTT  1900
                                                        
seq2  --------------------------------------------------  0

seq1  GATTTAATAACTTGTTTTTATTAAACAAAATTTGAAAAATCAAGACACAG  1950
                                                        
seq2  --------------------------------------------------  0

seq1  AAATGGAAGAACTGAGACAGGAGAATGCAGTAGGGGACAAAGTACTGAGC  2000
                                                        
seq2  --------------------------------------------------  0

seq1  TATCATTCCTGCGCACATAAGGAGACTAGATTCAATGCATACCCAGGCCA  2050
                                                        
seq2  --------------------------------------------------  0

seq1  CATAGAAAGGATATTAGAGTCAGGGAGCATCACACAGCTGTCCATGAAGA  2100
                                                        
seq2  --------------------------------------------------  0

seq1  CATATCTGTGTACAGTAACACCATGTAAGCTGGAGACTGCCAAGTTTGTC  2150
                                                        
seq2  --------------------------------------------------  0

seq1  AAGTTTCAGGATTGAGAGTGTGAACATGGCCATATCCAGGTCTCTGTGTC  2200
                                                        
seq2  --------------------------------------------------  0

seq1  TGCTATTGCTGAGCTGCAGTGACCAGTACCCACTGATGTAAAGCAGGACA  2250
                                                        
seq2  --------------------------------------------------  0

seq1  GAGAAACATCTTAACTAAAGGAGGAAGTCCACCCAATGATCTGGCTAACA  2300
                                                        
seq2  --------------------------------------------------  0

seq1  TCCTAGCTAAATCAGTGAGGTTCAAGGCCATTGTGAGGCACTGTGAGGAA  2350
                                                        
seq2  --------------------------------------------------  0

seq1  GGCATCAGGAAGAGAGCAATAGAGCATACCTGACACCCATCTCTGTCTTC  2400
                                                        
seq2  --------------------------------------------------  0

seq1  CATACACACATGCACATGCACAGGCCAGCACAGCTGAAAGTCTTTGCACT  2450
                                                        
seq2  --------------------------------------------------  0

seq1  TGCCGAGGTGGTGAAGCCTATTCACCACTTTCTCCTTTATCAGATTGTGT  2500
                                                        
seq2  --------------------------------------------------  0

seq1  CAAGTCATACATCAAGGTACTGGCTGCTAGGCAGTTCATTATTTTACTGT  2550
                                                        
seq2  --------------------------------------------------  0

seq1  ATGATGAATATGGATCTATTTTGATTCTTTAGAGGCAACCATGTAATTAG  2600
                                                        
seq2  --------------------------------------------------  0

seq1  ATGAGCACCATTTGTTGACAATTGTCTCTCAATTCCAGCGTTTTTTTTGT  2650
                                                        
seq2  --------------------------------------------------  0

seq1  TTTGTTTTGTTTTTGTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT  2700
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTTTTTTTTGCAAAAAATGAGATTACAGTAAGTGTTAGGAATTGTGAC  2750
                                                        
seq2  --------------------------------------------------  0

seq1  TGGGTCTTTAATCCTCTAAACCTATGCTCTTCTTATCATTATTGGTCTGT  2800
                                                        
seq2  --------------------------------------------------  0

seq1  AATACATTGTGAGTTCAAGGCTGGTGACACCTGTACCAGTTCTTTCATTT  2850
                                                        
seq2  --------------------------------------------------  0

seq1  TTCAGTATTGCTATAGAACTTGTACTCAATTTATGTAAAATAGTTGATTT  2900
                                                        
seq2  --------------------------------------------------  0

seq1  TAGTTAACTGCAATATATATTTGTTACATGTTTTAGATTAAAAAAATTCT  2950
                                                        
seq2  --------------------------------------------------  0

seq1  GATTGTACACCCATGCTGTGTGTTTACATTTGCATGTGTGTACAGTGGTG  3000
                                                        
seq2  --------------------------------------------------  0

seq1  CCAGATGTCAATCAATGTCAGGTTTTTACCTCATTTTCTGTGACTGGATC  3050
                                                        
seq2  --------------------------------------------------  0

seq1  TCTCACTTAAGCAAGGGCTCACCATTGCTGTAGCCTGACTGGCTGGTGAG  3100
                                                        
seq2  --------------------------------------------------  0

seq1  CTTGTGATGGCTGTTCTTGGATGTCAACTTAACTAAATGTGGGATTAACT  3150
                                                        
seq2  --------------------------------------------------  0

seq1  GAAAGCTCAAAAGATAAGGGCACATCTGAGACTTAGTTTTGCTCAACTTG  3200
                                                        
seq2  --------------------------------------------------  0

seq1  GAGTGGGAAAATCCACTCTAATCAGGATCTCTAAAATGGGAAGACACAGC  3250
                                                        
seq2  --------------------------------------------------  0

seq1  TTTAATTGGGATCTTTGAGGTGTGAAGACTCACCTGTGCTATGAGCCAGG  3300
                                                        
seq2  --------------------------------------------------  0

seq1  CCTTCTGCCGGAAGCCTGTGTAAGTCCATGAAGAAAAGATGCTTTTGCTG  3350
                                                        
seq2  --------------------------------------------------  0

seq1  TTTGCCTGTGTGCTTTCCCCTTGCCAGCAATCCATTCCTTCACTGGCACT  3400
                                                        
seq2  --------------------------------------------------  0

seq1  AGAGCCTAATGGTGTTGGAATCTGGCACATAGTGAATGTCAGCTAAGAAA  3450
                                                        
seq2  --------------------------------------------------  0

seq1  TCCACCCTAGTGAACAATTACTGGATTCTTTGAAATTATGCTCATAGGCA  3500
                                                        
seq2  --------------------------------------------------  0

seq1  GACATTTTCTGAATTGGTTAGACCACATTCTTAAGCCATTCTAACATCAG  3550
                                                        
seq2  --------------------------------------------------  0

seq1  GCATACACATATATATGTGTGTTTGCATTTCACATACATACATATACATA  3600
                                                        
seq2  --------------------------------------------------  0

seq1  CGCATACATACACATACACATACACACACACACACACACATACACATACA  3650
                                                        
seq2  --------------------------------------------------  0

seq1  CATACACACACATACACATATACATATACATACATAGAAAGAGAGAGTAA  3700
                                                        
seq2  --------------------------------------------------  0

seq1  AAGAGAAAAATTCTATAAATTCTAATTCTCTTGAAGATACTAACTAGTAT  3750
                                                        
seq2  --------------------------------------------------  0

seq1  AGTGTTTCAGGTAACTCTCTGTATCTCCTTTTCACTGTCAGGATTATAGG  3800
                                                        
seq2  --------------------------------------------------  0

seq1  CATGCACTCCTCTACAGGACTTTGTGTGGGTTCTGAAACACCGATCAGCT  3850
                                                        
seq2  --------------------------------------------------  0

seq1  ATTTCTGCATTTTCTGCAATAACTTTCCTGACTCAGCTATCTCCGCATTG  3900
                                                        
seq2  --------------------------------------------------  0

seq1  TGTAGTTTAATTATCAAGTAAGTCTCCAAAATTATACCGTATTTGTGTTT  3950
                                                        
seq2  --------------------------------------------------  0

seq1  GAAAAAGTACTAGCCATAGTGACATTCAGAAAAAAAAATGTGACAAATAA  4000
                                                        
seq2  --------------------------------------------------  0

seq1  TGCTACTGGTATTTAACTTGTGAAAAAGGGAGACTGTGATGTTTGCTTCA  4050
                                                        
seq2  --------------------------------------------------  0

seq1  GGAGATGGCATAAATAAGGCAGAGTTTCTGATTCATCAGTTTATAGAGAT  4100
                                                        
seq2  --------------------------------------------------  0

seq1  GGATGCAAAACATTATGACTAGTCGTTCTGGATTATCAACACAAAGGGCA  4150
                                                        
seq2  --------------------------------------------------  0

seq1  AAGAAGAGAAATGATGGTCTCCAAGAAGACGCTGTTGTGTGAATACTGCT  4200
                                                        
seq2  --------------------------------------------------  0

seq1  TGGTTGGGATTGTAAATCAGCCTGAATTTTTTTTGGTCCAGTGTTTTGAA  4250
                                                        
seq2  --------------------------------------------------  0

seq1  GTCCAAAATGTGCAAGACCCTTGTAGATCAAGTAAAGTTTTGAGTTGCTT  4300
                                                        
seq2  --------------------------------------------------  0

seq1  GAAAAAGATTTAAAAGTGATAGTCAGAGACACAGGTAGCTACAATTCATG  4350
                                                        
seq2  --------------------------------------------------  0

seq1  TACAAATATATCAAATAAAATCAGAACAACATTCCATGCAATGAAAGAGA  4400
                                                        
seq2  --------------------------------------------------  0

seq1  AAATCATGGAAAAGTTGCTGTAAACACAGAGAAGAAATCTCAGACTTGAA  4450
                                                        
seq2  --------------------------------------------------  0

seq1  CAATTCATGATGTCAAAGAAGAATCTAGACAGAGGTTCATAGCACATATG  4500
                                                        
seq2  --------------------------------------------------  0

seq1  AGGCACCTGTGTCACAAATGAGTGAGTGTATGAATATGTGATTGTGTTTC  4550
                                                        
seq2  --------------------------------------------------  0

seq1  TGTGCTTCTGTGTGTGTGAAAGAGAGAGAGAACATAGACACACACACACA  4600
                                                        
seq2  --------------------------------------------------  0

seq1  CACTAGAGAGCGACAGAGAGAGAGAGGGTGCATATGCACAGCCTGCAGTG  4650
                                                        
seq2  --------------------------------------------------  0

seq1  CTGTGAATGTTGTGATGCGGGCTCCTGTGCATGCACTGGTTCTCTACTGC  4700
                                                        
seq2  --------------------------------------------------  0

seq1  ATCCGTGGGTTCCAGGAATCACACTCAGCTCATCAAGTTTGACAGTGAGC  4750
                                                        
seq2  --------------------------------------------------  0

seq1  GTTTCTGGACCCTGCATCCTCCTGATGGTCCTAAAATCATCAGATAAATA  4800
                                                        
seq2  --------------------------------------------------  0

seq1  GCTAACATACATTGAGGATTAAAATAAATTGTATATAAATTTATATTACA  4850
                                                        
seq2  --------------------------------------------------  0

seq1  CTTAATGAAGGCAACTCGAGAAACCCAATTTTAGGACTTTTTATTTTTTT  4900
                                                        
seq2  --------------------------------------------------  0

seq1  ACTTTTATCGAGACAGGGTTTCTCTGTATAGTCCTGGCTGTCCTGGAACA  4950
                                                        
seq2  --------------------------------------------------  0

seq1  CAGTTTGTATATCAGGCTGGCCTCAAACTCAGAATTCTGCCTGCCTATGC  5000
                                                        
seq2  --------------------------------------------------  0

seq1  CTCCCGAGTGCTGGGATTAAAGTGGTGCACCACCACTGCCCAGTGGACTT  5050
                                                        
seq2  --------------------------------------------------  0

seq1  TAAATATTTTAAAGTATACCTTTACTTCAATGTATATTAATTGAGAGACA  5100
                                                        
seq2  --------------------------------------------------  0

seq1  CTTGCAACAATACCTTGCATTATTATTTACATACTTTGTAAACAATACAA  5150
                                                        
seq2  --------------------------------------------------  0

seq1  ATAAAACAAAAATTGTCAATTCAATATAGTTAACGTTTACAGAATATATT  5200
                                                        
seq2  --------------------------------------------------  0

seq1  ACAGGAAATTTTGATTTACAATAAATATGTAAATTACAAACAAAGACAGT  5250
                                                        
seq2  --------------------------------------------------  0

seq1  TTATTGGTGCTGGAACAGTTAATGAAAATTCAAATTAGGAAGAAAAACCC  5300
                                                        
seq2  --------------------------------------------------  0

seq1  TCAAAACCAGCTTTGGGTATGGAGCAGTGAAAGAGGAAGCAATAATGGAA  5350
                                                        
seq2  --------------------------------------------------  0

seq1  ATCTCAATGGGTTAGAAAAATGCCCAAACACAAGTGGAGAATGAGTTAAA  5400
                                                        
seq2  --------------------------------------------------  0

seq1  GAAAGTGAAAAGACAAGTGGAAAGTGATGGAAGGGCATTCAGAAAGTAAA  5450
                                                        
seq2  --------------------------------------------------  0

seq1  AACTAGTGTTTGCCCTATTTAAGACACATCCACCCAGGATGGTCTTCAGA  5500
                                                        
seq2  --------------------------------------------------  0

seq1  GAACCTAGAGGGGAAGGATCAGAACCAAACAGCCCAGAAGACCAGCAGCA  5550
                                                        
seq2  --------------------------------------------------  0

seq1  TTGGCAACATTCACCATGGCTAGGCTCTGTGCTTTCCTGATGGTCCTGGC  5600
                                                        
seq2  --------------------------------------------------  0

seq1  GGTGCTGAGCTACTGGCCAACCTGCTCTCTAGGATGTGACCTTCCTCAGA  5650
                                                        
seq2  --------------------------------------------------  0

seq1  CTCATAACCTCAGGAACAAGAGAGCCTTAACCCTCCTGGTAAAAATGAGG  5700
                                                        
seq2  --------------------------------------------------  0

seq1  AGACTCTCCCCTCTCTCCTGCCTGAAGGACAGAAAGGACTTTGGATTCCC  5750
                                                        
seq2  --------------------------------------------------  0

seq1  ACAGGAGAAGGTGGGTGCCCAGCAGATCCAGGAGGCTCAAGCCATCCCTG  5800
                                                        
seq2  --------------------------------------------------  0

seq1  TCCTGAGTGAGCTGACCCAGCAGGTCCTGAACATCTTCACATCAAAGGAC  5850
                                                        
seq2  --------------------------------------------------  0

seq1  TCATCTGCTGCATGGAATGCAACCCTCCTAGACTCATTCTGCAATGAAGT  5900
                                                        
seq2  --------------------------------------------------  0

seq1  CCATCAGCAGCTCAATGACCTCAAAGCCTGTGTGATGCAACAGGTCGGGG  5950
                                                        
seq2  --------------------------------------------------  0

seq1  TGCAGGAATCTCCCCTGACCCAGGAAGACTCCCTGCTGGCTGTGAGGAAA  6000
                                                        
seq2  --------------------------------------------------  0

seq1  TACTTCCACAGGATCACTGTGTACCTGAGAGAGAAGAAACACAGCCCCTG  6050
                                                        
seq2  --------------------------------------------------  0

seq1  TGCCTGGGAGGTGGTCAGAGCAGAAGTCTGGAGAGCCCTGTCTTCCTCAG  6100
                                                        
seq2  --------------------------------------------------  0

seq1  TTAACTTGCTGGCAAGATTGAGCAAGGAGGAGTGAGTCCTGAGACAAAGT  6150
                                                        
seq2  --------------------------------------------------  0

seq1  GTGGAGAGGACTTTTCTGAACCAGAACACTGCATCTCACTTTATAAGATC  6200
                                                        
seq2  --------------------------------------------------  0

seq1  TCCTTTAAAAACTCTCATAACTTTCACATATGAGTATAAACAACCTGCAC  6250
                                                        
seq2  --------------------------------------------------  0

seq1  AGATGTTTCAGCAATCTTGAGCGATCATTTTCAATATGTAAAACCATGTT  6300
                                                        
seq2  --------------------------------------------------  0

seq1  GGTATCTGAATCCACTTGTCCTTTCTTATTTGTTTGTTTATTTATTTATT  6350
                                                        
seq2  --------------------------------------------------  0

seq1  TATTATTCTGCTTTTAATAATTTAAGGTAATTATGCTAAATCTTCAGTCT  6400
                                                        
seq2  --------------------------------------------------  0

seq1  TATATTTTTAATTTAGCAAATTATTATGTGCAATTAACTTATTTTGTATT  6450
                                                        
seq2  --------------------------------------------------  0

seq1  CAAATAAATTTGCATTATAAGACACTTGGGATTTGTTAATTTGGTATCTC  6500
                                                        
seq2  --------------------------------------------------  0

seq1  TTTAACATTATCAAATATTTTTAACATTAGAGCATACTGCATAAGTACTG  6550
                                                        
seq2  --------------------------------------------------  0

seq1  TACAAATGAACAGTTTCCAAATACCAGAGAGGATACACACATACACTGCA  6600
                                                        
seq2  --------------------------------------------------  0

seq1  CAGTATTTAGACAAACATCAAACATATTCCTCTTCTCTGCATGTAGTGTT  6650
                                                        
seq2  --------------------------------------------------  0

seq1  CCTCGGAATGTGTAGACACCATGCTGTGCAGTAGAAAACCAGAGAAACCT  6700
                                                        
seq2  --------------------------------------------------  0

seq1  TTTGTTTGTTTGTTTGGTTTGGGTTTTGTTTTGTTTTGTTTTTGAGTCAG  6750
                                                        
seq2  --------------------------------------------------  0

seq1  GGTTTTTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTATAGACCAGG  6800
                                                        
seq2  --------------------------------------------------  0

seq1  CTGGCCTCCAACTAAGAAATCCACCTGACTCTGCCTCCCAAGTGCTGGAA  6850
                                                        
seq2  --------------------------------------------------  0

seq1  TTAAAGGCATGTGCCACCACTGCCTGGCTAAACCAGAGAATCTTGCTCCT  6900
                                                        
seq2  --------------------------------------------------  0

seq1  ATTATATTCCTTGGTTCACATTGACCAAATATTCCCTGGATTAATTTAGC  6950
                                                        
seq2  --------------------------------------------------  0

seq1  ATCTGATTTCCTTGATGTTGTATATGGATCATCTACCCTTATTGCTAATG  7000
                                                        
seq2  --------------------------------------------------  0

seq1  AGTTTAATTGTTTAGAGTTCTAAGTATGAGGAAGATGATGTATAGCAATG  7050
                                                        
seq2  --------------------------------------------------  0

seq1  CAAACCAATCAAGAAAAAGGAGTAGTCTGCCTATATAGCACAGAAAAGCA  7100
                                                        
seq2  --------------------------------------------------  0

seq1  GGACAAGAAGAAACTGGGAATTAGCTCCACTCGTAATAAGACTCCTATAC  7150
                                                        
seq2  --------------------------------------------------  0

seq1  CAGTCCTGGTAATGAATTTCATGAGGAACCTGAAATGACTCTAGAATTAA  7200
                                                        
seq2  --------------------------------------------------  0

seq1  CCCTCTGAAACACCACTACTCTTTCTCCATTTCCTGGACCCTACCTCTTC  7250
                                                        
seq2  --------------------------------------------------  0

seq1  ACATTTTCTACTTCTCTCTCTATTCCTCCTCCTCCTCCTCCTCCTCCTCC  7300
                                                        
seq2  --------------------------------------------------  0

seq1  TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGT  7350
                                                        
seq2  --------------------------------------------------  0

seq1  TCCATCTTCTTTGAACTACTTGTTGTGCATGATACAGCACCATCTCTGGA  7400
                                                        
seq2  --------------------------------------------------  0

seq1  ACATGATCTCTCTGGGGGGCGCAACCCTGAGGAAACCAGAATCTGTTTCT  7450
                                                        
seq2  --------------------------------------------------  0

seq1  CCAAGCAGCCATAAGTGGACATAGTTTCTTAACTGGAGATCGAATTGCCT  7500
                                                        
seq2  --------------------------------------------------  0

seq1  CTATTTTCCAAGCTCATATTTTGTCTGGCTTGGTCTTTTTCATTCAGTCA  7550
                                                        
seq2  --------------------------------------------------  0

seq1  TTGCCACTCTCAACCCACATGAGTAACTATTCTGCTGTGTTTAAGAACAC  7600
                                                        
seq2  --------------------------------------------------  0

seq1  ATCTTTGCTGCAGTCATCCACTGCTTCTGGCTCTTCCAATTCTTCTACTC  7650
                                                        
seq2  --------------------------------------------------  0

seq1  CCTCTCAAAGGATCCCTGAGGCAAGGAAATCAGCCCTTTATTTCCTGCCT  7700
                                                        
seq2  --------------------------------------------------  0

seq1  AGTGACCAGTTGAGAGTCTCTCTGTTCACTGGAATGGACGGCTAGAGGTG  7750
                                                        
seq2  --------------------------------------------------  0

seq1  TCTGTTGTAACCATTGGCCTCTGCAGGAACCCTCTCTATAATGCAAGTTC  7800
                                                        
seq2  --------------------------------------------------  0

seq1  TAATTTCAAATCAGGTATTGTGACAGCATAAATACAACACTTCTTTATTC  7850
                                                        
seq2  --------------------------------------------------  0

seq1  ATTGTTATCCTGATGGCTTCACATTTTTTAAATATGATAGTTCTGAGCAA  7900
                                                        
seq2  --------------------------------------------------  0

seq1  AATATTTCTGAAAATTTTACATGGATTGCATTGACACTGAAGATCAAGTG  7950
                                                        
seq2  --------------------------------------------------  0

seq1  AAAACATAGTCACTTTCATAACATTATATTGCTAATGGCCATAGATCTTG  8000
                                                        
seq2  --------------------------------------------------  0

seq1  TCCTTATTATCTTAGTACCTAACATTATTGCTACTACTTTGTCTTTGTGT  8050
                                                        
seq2  --------------------------------------------------  0

seq1  TAGATGACAAGTCAGTTCATTGTTCAGCTTTCACTTCCAATAACGTCATA  8100
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTGGTTCTGTGCTTCAAACCAATATCAGGGTTTTCTTTCTCGGAAAGT  8150
                                                        
seq2  --------------------------------------------------  0

seq1  AGAGGAGAGAAATAGAACAGAATTGGAGATTTTGGCGATCAAACCAACAC  8200
                                                        
seq2  --------------------------------------------------  0

seq1  CTCATGATAGAAGAAAAAGTAAATGGGAAAGTACAGACAGTTGAGGCACT  8250
                                                        
seq2  --------------------------------------------------  0

seq1  GAAAGCCATTCTGTCTGTTACAAGTAGCTGAACGACTATACCATTAAACA  8300
                                                        
seq2  --------------------------------------------------  0

seq1  CATTGGGCCCTGAAGATTAATCACTGAATTCAATATTCAATAA-GAATTG  8349
                                       ||||| |||| |||| |
seq2  ---------------------------------TATTCCATAAGGAATGG  17

seq1  ATGGCTGA-CAAAT-ATATTATATGGGCACCAGTGTGTTACACTGATACT  8397
      || ||||| ||||| |||||||||||||||||||||||||||||||||||
seq2  AT-GCTGACCAAATAATATTATATGGGCACCAGTGTGTTACACTGATACT  66

seq1  GAAAGTAGAATTACAG-ATAAATGTATATATCATAT-ATGATATCCTGTA  8445
      |||||||| | ||||| ||||||||||||||||||| |||||||||||||
seq2  GAAAGTAG-ACTACAGAATAAATGTATATATCATATAATGATATCCTGTA  115

seq1  TATATGATGTATATACCATTAATTTTATATATGCATATATATGTGTAAAT  8495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGATGTATATACCATTAATTTTATATATGCATATATATGTGTAAAT  165

seq1  GTATATGTTCCTATGTGCACACACACAGCTTCCTCTCTGATAGACCCCAG  8545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGTTCCTATGTGCACACACACAGCTTCCTCTCTGATAGACCCCAG  215

seq1  TACCTCCCTGCTGTCACAGACCCCATCTTTTAGTGTCTTCAGTTCTTGTC  8595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCCCTGCTGTCACAGACCCCATCTTTTAGTGTCTTCAGTTCTTGTC  265

seq1  TCCCCCT-CCCTGATGCAGAAAGCCCTACCGTGTGCTCCTCATTCTCTCC  8644
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTCCCCTGATGCAGAAAGCCCTACCGTGTGCTCCTCATTCTCTCC  315

seq1  GCATTACCCAGCGCTGCTCACCGTACAGCTGCTGTCTGTTTCATCTTGAT  8694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTACCCAGCGCTGCTCACCGTACAGCTGCTGTCTGTTTCATCTTGAT  365

seq1  TCCTGACTGGAGCTTTTATTTTTGAAAACACATGACCACTGTGAAAACCA  8744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACTGGAGCTTTTATTTTTGAAAACACATGACCACTGTGAAAACCA  415

seq1  GAATGAAAGAGTTCAAGGTTTGAATGAATCTCTCATGTATAAGAATTTCC  8794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAAAGAGTTCAAGGTTTGAATGAATCTCTCATGTATAAGAATTTCC  465

seq1  TCTTAATTTTAGACCTTAGACAATTACCTTCTAGAGACCTAATGCTTTCT  8844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATTTTAGACCTTAGACAATTACCTTCTAGAGACCTAATGCTTTCT  515

seq1  GCTTTAACAAAAAAGAAGAAAAACAAAAAAAAGATGAAAGACAGAAAAAA  8894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAACAAAAAAGAAGAAAAACAAAAAAAAGATGAAAGACAGAAAAAA  565

seq1  GAAAGGAAGGAAGTTCTGAGCAAATGGAGTAAAGAGGAAGGATAGAAGGA  8944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAAGGAAGTTCTGAGCAAATGGAGTAAAGAGGAAGGATAGAAGGA  615

seq1  AGGAAGAAAGGAGAAAGGAGGAAAGAAAGAAGAAAGGATATAAAGAGAGA  8994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAAAGGAGAAAGGAGGAAAGAAAGAAGAAAGGATATAAAGAGAGA  665

seq1  AAGGAAAAGGAAACCGAATATTCAATTATTAGAAAGTTTTAGAGAAGAAG  9044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAAGGAAACCGAATATTCAATTATTAGAAAGTTTTAGAGAAGAAG  715

seq1  TGCTCCACCTACTGGCCTGGCCTGCAATGAACAAACCTAATCCAACTCTG  9094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCACCTACTGGCCTGGCCTGCAATGAACAAACCTAATCCAACTCTG  765

seq1  TCAAGTTCTTTACAGAATTGTTTTCTGGCAGAGTTTCCTCCTCATGGAAA  9144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTCTTTACAGAATTGTTTTCTGGCAGAGTTTCCTCCTCATGGAAA  815

seq1  CACACTTTTCTCAAGATGAACTGACTTCAGGAAGAGTTTGTTCCCTTCAA  9194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTTTCTCAAGATGAACTGACTTCAGGAAGAGTTTGTTCCCTTCAA  865

seq1  ATTCATCTTCAGAAGGGAAACCTTCTCGGTTCCCCAGGCCGTGTCTTTTG  9244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCTTCAGAAGGGAAACCTTCTCGGTTCCCCAGGCCGTGTCTTTTG  915

seq1  AGCAATGCACAGATAACTATGCATAGCAAGGTCTTTTGTGTCCTTTCCCT  9294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGCACAGATAACTATGCATAGCAAGGTCTTTTGTGTCCTTTCCCT  965

seq1  CTATCCTCCTATAACAAAGTGATCTCAAGAATGAGGAGTCTGTGTGCAGT  9344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTCCTATAACAAAGTGATCTCAAGAATGAGGAGTCTGTGTGCAGT  1015

seq1  CAAGTAGTAGGGATTCGCAGACAAACTCACACCCTTTTGATCAGTAGGAA  9394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAGTAGGGATTCGCAGACAAACTCACACCCTTTTGATCAGTAGGAA  1065

seq1  AAGCATTGTGAAACTGAGACAACCAACCACAGGGTAGGAATTC  9437
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTGTGAAACTGAGACAACCAACCACAGGGTAGGAATTC  1108

seq1: chr4_88355767_88356963
seq2: B6Ng01-263H21.g_68_1252

seq1  GAATTCAGATCTTCATACTTGCTCACCAAACTCTCTGCCCCATGTAGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATCTTCATACTTGCTCACCAAACTCTCTGCCCCATGTAGCTG  50

seq1  GGCAGTGATGGTGCACACCTTTAATCCTAGCACTTGGGAGGCAGAGGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGATGGTGCACACCTTTAATCCTAGCACTTGGGAGGCAGAGGCAG  100

seq1  GTGGATTTCTAAATTCGAGGCCAGCCTGGGTCTACAGAGTGAGTTCCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTTCTAAATTCGAGGCCAGCCTGGGTCTACAGAGTGAGTTCCAGG  150

seq1  ACAGCCAAGGCTACACAGAGAAAAAAAAAAAAAAAAAAAAAAAAGGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAAGGCTACACAGAGAAAAAAAAAAAAAAAAAAAAAAAAGGAAAG  200

seq1  ATTAATGAAATGCAAACTATGTGTTTAGTTCATAGAATCAAAGCACACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGAAATGCAAACTATGTGTTTAGTTCATAGAATCAAAGCACACTC  250

seq1  AGTATTCATGTTAAGCATAAGGAATATATACAAATTATCCAATGGTAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTCATGTTAAGCATAAGGAATATATACAAATTATCCAATGGTAGGC  300

seq1  CAATGCATGTGAGGAGAGAGACAAAAATCCAAAACAGGAAAATCTCAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCATGTGAGGAGAGAGACAAAAATCCAAAACAGGAAAATCTCAGTC  350

seq1  TTCTACTGTCTGTCATTTTAGCATTAATCTTGTACACATTTTATTTATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTGTCTGTCATTTTAGCATTAATCTTGTACACATTTTATTTATGT  400

seq1  TCTATGAATTCAATGTCAATGGTTCTCACAGGATATACAAGATGTAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGAATTCAATGTCAATGGTTCTCACAGGATATACAAGATGTAAAAC  450

seq1  ACGTTTTAAAGAAATAGTAAGACTGTGTTAGAGTTGAGCTTTAGAGGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTTAAAGAAATAGTAAGACTGTGTTAGAGTTGAGCTTTAGAGGCCT  500

seq1  ATCAATCATTATAATAACCCAGATTATTTTCAGTCCCACACAACCAATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATCATTATAATAACCCAGATTATTTTCAGTCCCACACAACCAATCT  550

seq1  CCTATCACATGGAAGAAATATTATTCCCAGTGATCATACTCAATAGAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCACATGGAAGAAATATTATTCCCAGTGATCATACTCAATAGAGAG  600

seq1  ATCTCATTGAATTTTTTAAACTTGCATTAGAATTCACATTCCTCAAGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATTGAATTTTTTAAACTTGCATTAGAATTCACATTCCTCAAGAAT  650

seq1  TTTCAGCAATCAACTCCTAGTTAATTTTAATAAATAATAGAAAAGTGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCAATCAACTCCTAGTTAATTTTAATAAATAATAGAAAAGTGATG  700

seq1  TTAATGCTACATGTCAATAATGGGATCCAGATATAACAAGATAAATAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGCTACATGTCAATAATGGGATCCAGATATAACAAGATAAATAGCT  750

seq1  AGCTGGACAGTAGCCTTATACAACATGTAGGTGGCAGACATTCTTGTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGACAGTAGCCTTATACAACATGTAGGTGGCAGACATTCTTGTTTC  800

seq1  TCATTGCCTTCTTTATAGAAAGCAAAACATCTCTGCACCCCAATGACTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCCTTCTTTATAGAAAGCAAAACATCTCTGCACCCCAATGACTGA  850

seq1  GGACAAGAAGAAAACAAAAGTGCATCTAAATGTAATGAAAAAA-GAGCCA  899
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGACAAGAAGAAAACAAAAGTGCATCTAAATGTAATGAAAAAAGGAGCCA  900

seq1  AGGGAGGTGACATCCCACTGGCAAACAGTGAAAAAGTGTAAGCAGCCAGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGTGACATCCCACTGGCAAACAGTGAAAAAGTGTAAGCAGCCAGT  950

seq1  CTCCAGCAAGATGGAGGGTAGAAATAAGATAGAGCAGAAGCAAGATGGCC  999
      ||||||| ||||||||||||||||||||||||||||| ||| ||||||||
seq2  CTCCAGC-AGATGGAGGGTAGAAATAAGATAGAGCAG-AGC-AGATGGCC  997

seq1  AAAGGGGCAGAGCTCTAGGAACCAAGCACAGAGGCTGCAAAGCAGTCACT  1049
      ||| ||||||||||||||  ||  |||||||||||||| |||||||||||
seq2  AAA-GGGCAGAGCTCTAG--AC--AGCACAGAGGCTGCCAAGCAGTCACT  1042

seq1  CCCTAGCTCCTTTCAGCCTTGCTAAATCTGGCCTTCACAG-AGCTTCAAG  1098
       ||||||||  ||||| |||||||||||||| |||||||| ||| |  ||
seq2  -CCTAGCTC--TTCAG-CTTGCTAAATCTGG-CTTCACAGAAGCCTTCAG  1087

seq1  GAAGTCATGCTGCCCAACACCAAAAGACTATACAGCAAAAAACCAGACAC  1148
      |||||||||||| | ||||| |||  |||||||||| |||| |   ||||
seq2  GAAGTCATGCTGGCTAACACGAAAGAACTATACAGC-AAAATCTGAACAC  1136

seq1  ACTCTGCTGACAAGTGTTAATTATAT-CAAGTTCTCCCCTAATAAACTGC  1197
       ||||||||||| |  ||||| |||| || ||||||||||||||||| ||
seq2  -CTCTGCTGACAGGGTTTAATAATATCCAGGTTCTCCCCTAATAAACGGC  1185