BAC Information

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BAC

Clone NameB6Ng01-265O18
Chromosome4 (Build37)
Map Location 36,020,352 - 36,181,360
singlet/doubletdoublet
Overlap genenone
Upstream geneMobkl2b, Ifnk, 3110043O21Rik, LOC620559, LOC621227, Lingo2
Downstream geneLOC100042132, LOC545600
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265O18.bB6Ng01-265O18.g
ACCGA069445GA069446
length1,0151,139
definitionB6Ng01-265O18.b B6Ng01-265O18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,020,352 - 36,021,146)(36,180,227 - 36,181,360)
sequence
gaattccagaaaatttaagtagacaatttttattaagtatttagtaagca
ttggtaaaaaataaacagtgtacaaaggggctggagactataatactata
gggtattatggtgtcaggaaaatgccatggagaaggcatactaaaggaaa
aactacatttgtaaaggcaataacatagagtctaatgctcagcaaatcac
tcttctgtgtgataagtataataacagcccaacagaagatttcaataaca
ttaagtatttaagcatgtagttattgagactagatatttaaaagtataga
gaagtttttatattgttgagaatagttctcactctcctgggtttcttttc
ctttcttttcttttcttttcttctcttttcttttcttttcttttcttttc
ttttcttttcttttcttttcaaattccacatgaatttgagaattgctttt
tctatctctgtgaagaagtgagttggaattttgatggagattgcattgaa
tctgtagattgattttgttaacatggccatttttactatgttaatcctgc
tgatccatgaggatgggagatgtttccatcttctgaggtcttctatttct
ttcttcagaaacttgaagttcttgtcatacagatctttctctcatttggt
tagagtcacaccaagatattttatattatatttgtgacagttgtgaaggg
tcttttttccttaatttatttcacagcccatttatcctttgtgtagagga
aggctaccgaattgagttaattttatacccagccactttgtttaccaagg
ataggagttctctggtcgaagttttagggttacttatgtatgttagcaaa
tatcatctgcaaaccttgacttcttcctttctaatttgtatcactttgac
tcccttttgtttctcgttgttctggctagaactagatactgtattgaata
aaaagagagtaggcagccttgacttgtcccaatattagtgggattgcttc
aagtttccctacatt

gaattcttccaaaactggcaggaggtttttgaaaggtgacaggggctagg
gaactgagagtaagtcctccactccaatgaggaccaggttccagagaaga
aatatctgactctaacagaatcaaactgagacagaacaactttggtacta
acttttgttattgctcattagcaatatttttaaacatgagaagactcaca
tacatcaataatgatggaaaatgtaacttaaattcatttgtcaggattgg
tgagataagcatttgtttagataagccaaggttaaaaactatcatttgac
aaagaactaggctgatttgtaaagaataataatgctcttgagttctgaat
acgtgtttgtcttataatatataaaaatatagatcagtgagcgattaaga
aattgttactaagagaaaatcttcctatataaaaaagtgacttttatctt
acaaaaaatattttagcaaattgtataggctgtcataagccaaatcatat
ataattcatcctttgatttaaatctaaaataatttatttatttttattga
ttaaaagtatttctactacttaataaattactattaagccttttcttcca
gatagttttctccttacaaactataaacctaagtagcatgggagaaaatt
gataactacagactcctttgtaataggccttgtgcactattctcatttag
attctcttttgctccctgcttagattgctaattcttcccagtgacattgc
tttggctgagttgtgtcattaatcaaaatttatgcctcctactaacttct
tctgtgtgagtaaaagaaattagtgttgacacaggagataaagaaagcat
taatattaaattcacatgtaatgttcctgctaccacgactagccaagtga
gaagtagttttatattcctgtaactaatatcttcattaaaactttgtggc
ttcatagaatagtaagtgtgctgtatttgtcagtctcatttgtatcccca
aatacccattgtatgctttgctagaaatatgtgtcactttttgacagtct
cattaacctgtgatggagaatgtattaactggctataagtcttatgcaat
aaatactgtccaacacccagaagttcatgagcaatgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_36020352_36021146
seq2: B6Ng01-265O18.b_46_840

seq1  GAATTCCAGAAAATTTAAGTAGACAATTTTTATTAAGTATTTAGTAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAAATTTAAGTAGACAATTTTTATTAAGTATTTAGTAAGCA  50

seq1  TTGGTAAAAAATAAACAGTGTACAAAGGGGCTGGAGACTATAATACTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAAAAAATAAACAGTGTACAAAGGGGCTGGAGACTATAATACTATA  100

seq1  GGGTATTATGGTGTCAGGAAAATGCCATGGAGAAGGCATACTAAAGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATTATGGTGTCAGGAAAATGCCATGGAGAAGGCATACTAAAGGAAA  150

seq1  AACTACATTTGTAAAGGCAATAACATAGAGTCTAATGCTCAGCAAATCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACATTTGTAAAGGCAATAACATAGAGTCTAATGCTCAGCAAATCAC  200

seq1  TCTTCTGTGTGATAAGTATAATAACAGCCCAACAGAAGATTTCAATAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGTGTGATAAGTATAATAACAGCCCAACAGAAGATTTCAATAACA  250

seq1  TTAAGTATTTAAGCATGTAGTTATTGAGACTAGATATTTAAAAGTATAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTATTTAAGCATGTAGTTATTGAGACTAGATATTTAAAAGTATAGA  300

seq1  GAAGTTTTTATATTGTTGAGAATAGTTCTCACTCTCCTGGGTTTCTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTTTATATTGTTGAGAATAGTTCTCACTCTCCTGGGTTTCTTTTC  350

seq1  CTTTCTTTTCTTTTCTTTTCTTCTCTTTTCTTTTCTTTTCTTTTCTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTTCTTTTCTTTTCTTCTCTTTTCTTTTCTTTTCTTTTCTTTTC  400

seq1  TTTTCTTTTCTTTTCTTTTCAAATTCCACATGAATTTGAGAATTGCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTCTTTTCTTTTCAAATTCCACATGAATTTGAGAATTGCTTTT  450

seq1  TCTATCTCTGTGAAGAAGTGAGTTGGAATTTTGATGGAGATTGCATTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTCTGTGAAGAAGTGAGTTGGAATTTTGATGGAGATTGCATTGAA  500

seq1  TCTGTAGATTGATTTTGTTAACATGGCCATTTTTACTATGTTAATCCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGATTGATTTTGTTAACATGGCCATTTTTACTATGTTAATCCTGC  550

seq1  TGATCCATGAGGATGGGAGATGTTTCCATCTTCTGAGGTCTTCTATTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCATGAGGATGGGAGATGTTTCCATCTTCTGAGGTCTTCTATTTCT  600

seq1  TTCTTCAGAAACTTGAAGTTCTTGTCATACAGATCTTTCTCTCATTTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAGAAACTTGAAGTTCTTGTCATACAGATCTTTCTCTCATTTGGT  650

seq1  TAGAGTCACACCAAGATATTTTATATTATATTTGTGACAGTTGTGAAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCACACCAAGATATTTTATATTATATTTGTGACAGTTGTGAAGGG  700

seq1  TCTTTTTTCCTTAATTTATTTCACAGCCCATTTATCCTTTGTGTAGAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTCCTTAATTTATTTCACAGCCCATTTATCCTTTGTGTAGAGGA  750

seq1  AGGCTACCGAATTGAGTTAATTTTATACCCAGCCACTTTGTTTAC  795
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTACCGAATTGAGTTAATTTTATACCCAGCCACTTTGTTTAC  795


seq1: chr4_36180227_36181360
seq2: B6Ng01-265O18.g_66_1204 (reverse)

seq1  AAACA-TGCTCATGAAC-TCTGTGTGT--GACAGTA-TTATTGCATAAGA  45
      ||||| ||||||||||| |||| ||||  ||||||| |||||||||||||
seq2  AAACATTGCTCATGAACTTCTGGGTGTTGGACAGTATTTATTGCATAAGA  50

seq1  ACTATAGCCAG-TAATACA-TCT-CATCACAGGGTTAAATGAGACTGTCA  92
        ||||||||| ||||||| ||| |||||||||  | |||||||||||||
seq2  CTTATAGCCAGTTAATACATTCTCCATCACAGG--TTAATGAGACTGTCA  98

seq1  AAAAGTGACACATA-TTCTAGCAAAGCATACAATGGGGTATTTGGGGATA  141
      |||||||||||||| ||||||||||||||||||| |||||||||||||||
seq2  AAAAGTGACACATATTTCTAGCAAAGCATACAAT-GGGTATTTGGGGATA  147

seq1  CAAATGAGACTGACAAATACAGCACACCTTACTATTCTATGAAGCCACAA  191
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAAATGAGACTGACAAATACAGCACA-CTTACTATTCTATGAAGCCACAA  196

seq1  AGTTTTAATGAAGATATTAGTTACAGGAATATAAAACTACTTCTCACTTG  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAATGAAGATATTAGTTACAGGAATATAAAACTACTTCTCACTTG  246

seq1  GCTAGTCGTGGTAGCAGGAACATTACATGTGAATTTAATATTAATGCTTT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTCGTGGTAGCAGGAACATTACATGTGAATTTAATATTAATGCTTT  296

seq1  CTTTATCTCCTGTGTCAACACTAATTTCTTTTACTCACACAGAAGAAGTT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCTCCTGTGTCAACACTAATTTCTTTTACTCACACAGAAGAAGTT  346

seq1  AGTAGGAGGCATAAATTTTGATTAATGACACAACTCAGCCAAAGCAATGT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGAGGCATAAATTTTGATTAATGACACAACTCAGCCAAAGCAATGT  396

seq1  CACTGGGAAGAATTAGCAATCTAAGCAGGGAGCAAAAGAGAATCTAAATG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGAAGAATTAGCAATCTAAGCAGGGAGCAAAAGAGAATCTAAATG  446

seq1  AGAATAGTGCACAAGGCCTATTACAAAGGAGTCTGTAGTTATCAATTTTC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGTGCACAAGGCCTATTACAAAGGAGTCTGTAGTTATCAATTTTC  496

seq1  TCCCATGCTACTTAGGTTTATAGTTTGTAAGGAGAAAACTATCTGGAAGA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGCTACTTAGGTTTATAGTTTGTAAGGAGAAAACTATCTGGAAGA  546

seq1  AAAGGCTTAATAGTAATTTATTAAGTAGTAGAAATACTTTTAATCAATAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTTAATAGTAATTTATTAAGTAGTAGAAATACTTTTAATCAATAA  596

seq1  AAATAAATAAATTATTTTAGATTTAAATCAAAGGATGAATTATATATGAT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAATTATTTTAGATTTAAATCAAAGGATGAATTATATATGAT  646

seq1  TTGGCTTATGACAGCCTATACAATTTGCTAAAATATTTTTTGTAAGATAA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTATGACAGCCTATACAATTTGCTAAAATATTTTTTGTAAGATAA  696

seq1  AAGTCACTTTTTTATATAGGAAGATTTTCTCTTAGTAACAATTTCTTAAT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACTTTTTTATATAGGAAGATTTTCTCTTAGTAACAATTTCTTAAT  746

seq1  CGCTCACTGATCTATATTTTTATATATTATAAGACAAACACGTATTCAGA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCACTGATCTATATTTTTATATATTATAAGACAAACACGTATTCAGA  796

seq1  ACTCAAGAGCATTATTATTCTTTACAAATCAGCCTAGTTCTTTGTCAAAT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGAGCATTATTATTCTTTACAAATCAGCCTAGTTCTTTGTCAAAT  846

seq1  GATAGTTTTTAACCTTGGCTTATCTAAACAAATGCTTATCTCACCAATCC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTTTTTAACCTTGGCTTATCTAAACAAATGCTTATCTCACCAATCC  896

seq1  TGACAAATGAATTTAAGTTACATTTTCCATCATTATTGATGTATGTGAGT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAATGAATTTAAGTTACATTTTCCATCATTATTGATGTATGTGAGT  946

seq1  CTTCTCATGTTTAAAAATATTGCTAATGAGCAATAACAAAAGTTAGTACC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCATGTTTAAAAATATTGCTAATGAGCAATAACAAAAGTTAGTACC  996

seq1  AAAGTTGTTCTGTCTCAGTTTGATTCTGTTAGAGTCAGATATTTCTTCTC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGTTCTGTCTCAGTTTGATTCTGTTAGAGTCAGATATTTCTTCTC  1046

seq1  TGGAACCTGGTCCTCATTGGAGTGGAGGACTTACTCTCAGTTCCCTAGCC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACCTGGTCCTCATTGGAGTGGAGGACTTACTCTCAGTTCCCTAGCC  1096

seq1  CCTGTCACCTTTCAAAAACCTCCTGCCAGTTTTGGAAGAATTC  1134
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCACCTTTCAAAAACCTCCTGCCAGTTTTGGAAGAATTC  1139


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