BAC Information

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BAC

Clone NameB6Ng01-268M13
Chromosome4 (Build37)
Map Location 22,425,329 - 22,426,478
singlet/doubletsinglet
Overlap genenone
Upstream genePrdm13, Ccnc, 2610029I01Rik, Usp45, 4930528A17Rik, 5730406M06Rik, Coq3, 6230409E13Rik, LOC100040379, Fbxl4, Pou3f2
Downstream geneLOC664911, 1700025O08Rik, LOC625462
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268M13.bB6Ng01-268M13.g
ACCGA071551GA071552
length1,1401,201
definitionB6Ng01-268M13.b B6Ng01-268M13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctcgcagcaagcgctagggcggggcctgggagaactaccctggc
gttggcgacctagggctcagcctcgcgcgctgagagtcgcgtcactaagt
gcttttgcgagcacccggttctatagaaaaccgaccgccttggatccttg
tgtattctcaaaatctctcctaagaagtctttggtggaaagatgcctctt
ccccaaaccccgcagactctcactgccacagctgccgggttcgaactttc
cagctcctctgctcaccggcgtaagctgcggcttccctggttgcctcggt
tcccctctcccggagcaggcggtctgagagatgctctgctcggccagagg
acgcctccgctgtggcgccctagagcgtgcccgtgccactccagaaattg
cattcaatactagttcagcatcttccgggagaggacgcactgtaagaagt
cactgggaggagtctgggcgctaggtgcgtctgccctttagaatttacaa
ggaaatgcaaaatgaatgacactcaggagcgttcctcaaaagaccactcg
gaaagccgtgcgctagtctggagaaacacctcttacttgctctttgtcta
cactgggagctcaaacgaactgaaacacgcttacactctgtttacccttc
ttgttttcttaaacgagttttgggtgactttggctggggccatttgcagc
agagacagactttgtacgcttgctgcaggcctctttcaaagttgtagttt
aaagagcattatgtaagcctctctatttacataagagctttaactcaaac
cgcccagaaaaccttttatcaccgaaggaaaaccatccagagcagcagct
aaccgagtctttaggacacgttgaaaaacagcagtagctcattcttttgg
ggggaaaaatgttaacaaaactcaatagtttccatttttattcggcttgg
tttctatcatttgaacataaacttaattcagctgtagagacttttagagt
atattcatcttcccccatgtgcagttagcatcctactggccacagaagat
gatttcccccccctccccacgccggttatctaaatataagacaaatctta
gccaaatcaaatcgaatttaccaaggcccttatttaaaat

gaattcagaagaaaatccatccaggctaaagtttcttttacttagaagaa
ttttattactgcctcaatctcattattccctataaatctgtttaaagtgc
ttctattctattggactaattttagtagatcgaaaatctttataacacta
tgtctctagattttctgatttattgcaatttattacaattattgaaatgt
ccctcagaggatcaatgatcatttgaattttgttagtatttgttgtaata
tctccacttttgacactgatcttactcatttggtttttctcagttggcta
aaagtttatcagtcttgtttattctttcaaagaaccaaccctatgtttca
ttgattctatatactgttatttttgttttcatttcattaatttctaacca
gatctttattatctctttccatgtagtgattctgaatttggttttctctt
ctctttctaagaactttaggtgcataatcaagttatgcattttaagatct
ctttaattttttattaaattattgtatttatttataataaaaatgttgtc
ccccttcctggtatcaccttccaaaattcttcatgccattcccccaccct
ttggctctgagtgggtgctcccccaccacccccttcactcatatgcagtc
ccacattcccctttcccagcatcccccttccctggggcatcaggtctcta
caagattaggtacatcctctcccactgaggccagacaagacagtcctctg
ctacatgtgtgccagggtacagtccatgtatgctctttggttggtgactt
agcctctgggagctctgaggggtctgggttagttgatactctcgttcttc
ctatagggttgccatccccttcacttccttcaatcctttccctaactttc
catagggggtccaatccaatagtttggctataagtatctgcgtctgtctc
agtcagctgctgggagagcctctcagagacagcatgtcagctcctgtctg
caagaacaatatgacatcagtatagtcaggtttgatatctgcccatgatg
ggttccagtgggccgtcactgaatggtctttcttcagtttcttgcttcat
tttttgtcctgcatttgttcaaatattttaaggtaggtggttgccctcct
cacttggaccctgtcctatatatattctacaaggtgtctctctcatcaga
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_22425329_22426478
seq2: B6Ng01-268M13.b_44_1183

seq1  GAATTCCTCGCAGCAAGCGCTAGGGCGGGGCCTGGGAGAACTACCCTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCGCAGCAAGCGCTAGGGCGGGGCCTGGGAGAACTACCCTGGC  50

seq1  GTTGGCGACCTAGGGCTCAGCCTCGCGCGCTGAGAGTCGCGTCACTAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCGACCTAGGGCTCAGCCTCGCGCGCTGAGAGTCGCGTCACTAAGT  100

seq1  GCTTTTGCGAGCACCCGGTTCTATAGAAAACCGACCGCCTTGGATCCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGCGAGCACCCGGTTCTATAGAAAACCGACCGCCTTGGATCCTTG  150

seq1  TGTATTCTCAAAATCTCTCCTAAGAAGTCTTTGGTGGAAAGATGCCTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCTCAAAATCTCTCCTAAGAAGTCTTTGGTGGAAAGATGCCTCTT  200

seq1  CCCCAAACCCCGCAGACTCTCACTGCCACAGCTGCCGGGTTCGAACTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAACCCCGCAGACTCTCACTGCCACAGCTGCCGGGTTCGAACTTTC  250

seq1  CAGCTCCTCTGCTCACCGGCGTAAGCTGCGGCTTCCCTGGTTGCCTCGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCTCTGCTCACCGGCGTAAGCTGCGGCTTCCCTGGTTGCCTCGGT  300

seq1  TCCCCTCTCCCGGAGCAGGCGGTCTGAGAGATGCTCTGCTCGGCCAGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCTCCCGGAGCAGGCGGTCTGAGAGATGCTCTGCTCGGCCAGAGG  350

seq1  ACGCCTCCGCTGTGGCGCCCTAGAGCGTGCCCGTGCCACTCCAGAAATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTCCGCTGTGGCGCCCTAGAGCGTGCCCGTGCCACTCCAGAAATTG  400

seq1  CATTCAATACTAGTTCAGCATCTTCCGGGAGAGGACGCACTGTAAGAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAATACTAGTTCAGCATCTTCCGGGAGAGGACGCACTGTAAGAAGT  450

seq1  CACTGGGAGGAGTCTGGGCGCTAGGTGCGTCTGCCCTTTAGAATTTACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGAGGAGTCTGGGCGCTAGGTGCGTCTGCCCTTTAGAATTTACAA  500

seq1  GGAAATGCAAAATGAATGACACTCAGGAGCGTTCCTCAAAAGACCACTCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGCAAAATGAATGACACTCAGGAGCGTTCCTCAAAAGACCACTCG  550

seq1  GAAAGCCGTGCGCTAGTCTGGAGAAACACCTCTTACTTGCTCTTTGTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCGTGCGCTAGTCTGGAGAAACACCTCTTACTTGCTCTTTGTCTA  600

seq1  CACTGGGAGCTCAAACGAACTGAAACACGCTTACACTCTGTTTACCCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGAGCTCAAACGAACTGAAACACGCTTACACTCTGTTTACCCTTC  650

seq1  TTGTTTTCTTAAACGAGTTTTGGGTGACTTTGGCTGGGGCCATTTGCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTCTTAAACGAGTTTTGGGTGACTTTGGCTGGGGCCATTTGCAGC  700

seq1  AGAGACAGACTTTGTACGCTTGCTGCAGGCCTCTTTCAAAGTTGTAGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGACTTTGTACGCTTGCTGCAGGCCTCTTTCAAAGTTGTAGTTT  750

seq1  AAAGAGCATTATGTAAGCCTCTCTATTTACATAAGAGCTTTAACTCAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCATTATGTAAGCCTCTCTATTTACATAAGAGCTTTAACTCAAAC  800

seq1  CGCCCAGAAAACCTTTTATCACCGAAGGAAAACCATCCAGAGCAGCAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCAGAAAACCTTTTATCACCGAAGGAAAACCATCCAGAGCAGCAGCT  850

seq1  AACCGAGTCTTTAGGACACGTTGAAAAACAGCAGTAGCTCATTCTTTTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGAGTCTTTAGGACACGTTGAAAAACAGCAGTAGCTCATTCTTTTGG  900

seq1  GGGGAAAAATGTTAACAAAAACTCAATAGTTTCCATTTTTATTCGGCTTG  950
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGGGAAAAATGTTAAC-AAAACTCAATAGTTTCCATTTTTATTCGGCTTG  949

seq1  GTTTTCTATCATTTGAACATTAAACTTAATTCAGGCTGTAGAGACTTTTA  1000
      | ||||||||||||||||| ||||||||||||| ||||||||||||||||
seq2  G-TTTCTATCATTTGAACA-TAAACTTAATTCA-GCTGTAGAGACTTTTA  996

seq1  GAGTATATTCATTCTTCCCCCATGTGCAGTTAGCATCTAACTGGGCCACA  1050
      ||||||||||| |||||||||||||||||||||||||  ||| |||||||
seq2  GAGTATATTCA-TCTTCCCCCATGTGCAGTTAGCATCCTACT-GGCCACA  1044

seq1  G-AGATGATTTCCCCCCC--TCCCACGCCGTTAATTCTAAATATAAGGAC  1097
      | ||||||||||||||||   ||||||||| | | ||||||||||| |||
seq2  GAAGATGATTTCCCCCCCCTCCCCACGCCGGTTA-TCTAAATATAA-GAC  1092

seq1  AAATCTTAGCAAAATCAAATCGACATTTTACCAAGGCCCCTATTTTTAAA  1147
      |||||||||| |||||||||||  | ||||||||||||| |||||   ||
seq2  AAATCTTAGCCAAATCAAATCG--AATTTACCAAGGCCCTTATTT---AA  1137

seq1  AAT  1150
      |||
seq2  AAT  1140


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