BAC Information

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BAC

Clone NameB6Ng01-270A13
Chromosome4 (Build37)
Map Location 20,667,119 - 20,798,472
singlet/doubletdoublet
Overlap geneE130310K16Rik
Upstream geneSlc7a13, Atp6v0d2, LOC667282, Ttpa, LOC667301, EG664800
Downstream genePrdm13, Ccnc, 2610029I01Rik, Usp45, 4930528A17Rik, 5730406M06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270A13.bB6Ng01-270A13.g
ACCGA072479GA072480
length1,0991,125
definitionB6Ng01-270A13.b B6Ng01-270A13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,667,119 - 20,668,236)(20,797,324 - 20,798,472)
sequence
gaattcacacatgacttgcacatctggctagaggttcctcctctcatacc
tcctgaacatttaatatcactttctaggacataaacaataccctaataaa
tagtaaaaaaaaaaaaaaaaaaaagtgaagcagtattgaactaatggaga
aacaaattgaattgctgacgtctaaaaaatgaggaggcagttcaacagtg
tctgactacaggacatttttgatcctctgggaagcagaattcattgacaa
tggccaactaggagttacttccctcctctgctaagtcccttaatgcttct
ctgagtactgttcagtgtgactgcactgaacacagtggatactaagagaa
ccagtgtgttccctattactaaagtttgcaatggcataactttttaaagc
tgttgtgtttttttaaatccactttctatcagaataatttgaaactatta
aagttttaaagtcacatttactagaaatgtgttttgtataattaagagta
agtgatatgttttagtgaacatagccactgattaactggccactgtgttc
ctgtttccattacacggggccataatactccttaaccaaacacatagcta
atatcaatttatacataaggtaataagtgactaagtgtcacacagctatt
aggatcaggatagatctggtcagaattttcctcatggatcttctttccac
tataatcaaggcttcttttttaaaagatagaaaaggaaagtttccttttt
aattttgttattgggcatgctgggattaaaagtatagtctttcatctata
aggtaaaagccccatcactgagtggtaatagcagtcttacacctgcccat
gttgatgttaacgcagtttttttgctgacttttgaactttgtgctgaata
ttcacatgccacggacatgaccctaggagacatggaactctcatgaattc
agagcagaggctggcagctctagctctctagtgtgtttgactttatgcta
tgaacatttagatcatagacattaaaccctagtgtttcagtactaaccca
aacactgcatcagcaggcgaatgagaaaacagcttatactgctggctgt
gaattcaactgactggaaactcatcaagtttcagctttgaagggaatctc
attaaatcatcaacatggataggaaacatagacagaatatgaagcctaga
gtcaaagatgaagagaaagaaaatctgtccaaatcaaggagtttaagaaa
gttgactgaggctgggcgtggtggcgtatgcctttaatcccagcatttag
gaggcagaggcaggcggacttctgagttcgaggccagcctggtctacaga
gtgcgttccaggacagtcagggctacacagagaaaccctgtctcaaaaaa
aaaaaagactgaaagttgagtgacagagggaggaaacattttgtttgctg
aagtttgggagaagtcgagcagtacaggatgccccaaagggttcatgagt
tgctcttgttcccttgctggtgttgcttttcaaaaggtagtgagcaccag
gcctgactggaggaattagatccgaggaacatgtcttgaggattctatct
gatccttgttctgcccacatcctctgcttactattttccttgctcctggt
gctatggtgttctgcttgactgtcaatacagaaatagtggagctaagggc
tgggcactgttatggctgaaactgagcagcccctttaaattcttctctct
agaattctggttacaattacacaaaattccaagcacagcagagtcataga
gagagctttgtgcattcttgatattgtgaaggacccatgttgaaggcaag
atggagaaatgggtaaatcaattggaagattgtggctgtaagtcaagtaa
tgcagaactagacagagacagcaaaattctgctgaattagagttcttatt
tgccctctaattaaagcttacaatcatgccgattaatttgtaacataagg
ttgtagaccttgtgtccttcagcatgtttttctaattttacaaggaagaa
aattaaagatgaatagatctatttgcgcactggttgagaccctttgtgtt
tcatgagactgacgcctatagagccactacacatgtcatagtctgatgat
tttttcttctccatttttattagtatttagctcaatgacatttcatgcta
tacaaagttccttacaccacgccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_20667119_20668236
seq2: B6Ng01-270A13.b_47_1145

seq1  GAATTCACACATGACTTGCACATCTGGCTAGAGGTTCCTCCTCTCATACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACATGACTTGCACATCTGGCTAGAGGTTCCTCCTCTCATACC  50

seq1  TCCTGAACATTTAATATCACTTTCTAGGACATAAACAATACCCTAATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAACATTTAATATCACTTTCTAGGACATAAACAATACCCTAATAAA  100

seq1  TAGTAAAAAAAAAAAAAAAAAAAAGTGAAGCAGTATTGAACTAATGGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAAAAAAAAAAAAAAAAAAGTGAAGCAGTATTGAACTAATGGAGA  150

seq1  AACAAATTGAATTGCTGACGTCTAAAAAATGAGGAGGCAGTTCAACAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATTGAATTGCTGACGTCTAAAAAATGAGGAGGCAGTTCAACAGTG  200

seq1  TCTGACTACAGGACATTTTTGATCCTCTGGGAAGCAGAATTCATTGACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTACAGGACATTTTTGATCCTCTGGGAAGCAGAATTCATTGACAA  250

seq1  TGGCCAACTAGGAGTTACTTCCCTCCTCTGCTAAGTCCCTTAATGCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAACTAGGAGTTACTTCCCTCCTCTGCTAAGTCCCTTAATGCTTCT  300

seq1  CTGAGTACTGTTCAGTGTGACTGCACTGAACACAGTGGATACTAAGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTACTGTTCAGTGTGACTGCACTGAACACAGTGGATACTAAGAGAA  350

seq1  CCAGTGTGTTCCCTATTACTAAAGTTTGCAATGGCATAACTTTTTAAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTGTTCCCTATTACTAAAGTTTGCAATGGCATAACTTTTTAAAGC  400

seq1  TGTTGTGTTTTTTTAAATCCACTTTCTATCAGAATAATTTGAAACTATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGTTTTTTTAAATCCACTTTCTATCAGAATAATTTGAAACTATTA  450

seq1  AAGTTTTAAAGTCACATTTACTAGAAATGTGTTTTGTATAATTAAGAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTAAAGTCACATTTACTAGAAATGTGTTTTGTATAATTAAGAGTA  500

seq1  AGTGATATGTTTTAGTGAACATAGCCACTGATTAACTGGCCACTGTGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATATGTTTTAGTGAACATAGCCACTGATTAACTGGCCACTGTGTTC  550

seq1  CTGTTTCCATTACACGGGGCCATAATACTCCTTAACCAAACACATAGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCCATTACACGGGGCCATAATACTCCTTAACCAAACACATAGCTA  600

seq1  ATATCAATTTATACATAAGGTAATAAGTGACTAAGTGTCACACAGCTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAATTTATACATAAGGTAATAAGTGACTAAGTGTCACACAGCTATT  650

seq1  AGGATCAGGATAGATCTGGTCAGAATTTTCCTCATGGATCTTCTTTCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCAGGATAGATCTGGTCAGAATTTTCCTCATGGATCTTCTTTCCAC  700

seq1  TATAATCAAGGCTTCTTTTTTAAAAGATAGAAAAGGAAAGTTTCCTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCAAGGCTTCTTTTTTAAAAGATAGAAAAGGAAAGTTTCCTTTTT  750

seq1  AATTTTGTTATTGGGCATGCTGGGATTAAAAGTATAGTCTTTCATCTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGTTATTGGGCATGCTGGGATTAAAAGTATAGTCTTTCATCTATA  800

seq1  AGGTAAAAGCCCCATCACTGAGTGGTAATAGCAGTCTTACACCTGCCCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAAAGCCCCATCACTGAGTGGTAATAGCAGTCTTACACCTGCCCAT  850

seq1  GTTGATGTTAACGCAGTTTTTTTGCTGACTTTTGAACTTTGTGCTGAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATGTTAACGCAGTTTTTTTGCTGACTTTTGAACTTTGTGCTGAATA  900

seq1  TTCACATGCCACGGACATGACCCTAGGAGAACAATGGAACTCTCATGAAT  950
      ||||||||||||||||||||||||||||||   |||||||||||||||||
seq2  TTCACATGCCACGGACATGACCCTAGGAGA--CATGGAACTCTCATGAAT  948

seq1  TCAGAGCAGAGGCTGGCAGGCTTCCTAAGCTCTCTAGTGGTGTTTGAACT  1000
      |||||||||||||||||| |||  || ||||||||||| ||||||| |||
seq2  TCAGAGCAGAGGCTGGCA-GCT--CT-AGCTCTCTAGT-GTGTTTG-ACT  992

seq1  TTATGCTTATGAACATTTTAGATCATAGACCATTAAACCCTAGTGTTTCA  1050
      |||||| |||||||| ||||||||||||| ||||||||||||||||||||
seq2  TTATGC-TATGAACA-TTTAGATCATAGA-CATTAAACCCTAGTGTTTCA  1039

seq1  GTTACTACACCCAAACACCTGGCCATTCAGCAGCAGATTGAAGAAAACAG  1100
      | ||||| ||||||||| |||  || |||||||  || || |||||||||
seq2  G-TACTA-ACCCAAACA-CTG--CA-TCAGCAGGCGAATG-AGAAAACAG  1082

seq1  CTTATACTTGCTGGCTGT  1118
      ||||||| ||||||||||
seq2  CTTATAC-TGCTGGCTGT  1099

seq1: chr4_20797324_20798472
seq2: B6Ng01-270A13.g_66_1190 (reverse)

seq1  GTGG-GTGG-GTAAGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGA  48
      |||| |||| ||||  || |||||  |||||||||  ||||||| | |||
seq2  GTGGCGTGGTGTAA--GGAACTTT--GTATAGCAT--GAAATGTCATTGA  44

seq1  GCTAAATACCTAATAAAAAATGGAAAAAAAAAAAAAAAAAAAATTCATCA  98
      |||||||| ||||| ||||||||| || ||||||          ||||||
seq2  GCTAAATA-CTAAT-AAAAATGGAGAAGAAAAAA----------TCATCA  82

seq1  GACTATGACAATTGTGTAGTGGCTCTTATAGGCCTTCAGTTCCTCATGAA  148
      ||||||||||  ||||||||||||| |||||| | |||||  ||||||||
seq2  GACTATGACA--TGTGTAGTGGCTC-TATAGG-CGTCAGT--CTCATGAA  126

seq1  ACACAAAGGGTTCTCAACCAGTGCCGCAAATAGATCTATTCATCTTTAAT  198
      |||||||||| |||||||||||| ||||||||||||||||||||||||||
seq2  ACACAAAGGG-TCTCAACCAGTG-CGCAAATAGATCTATTCATCTTTAAT  174

seq1  TTTCTTCCTTGTAAAATTAGAAAAACATGCTGAAGGACACAAGGTCTACA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCTTGTAAAATTAGAAAAACATGCTGAAGGACACAAGGTCTACA  224

seq1  ACCTTATGTTACAAATTAATCGGCATGATTGTAAGCTTTAATTAGAGGGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTATGTTACAAATTAATCGGCATGATTGTAAGCTTTAATTAGAGGGC  274

seq1  AAATAAGAACTCTAATTCAGCAGAATTTTGCTGTCTCTGTCTAGTTCTGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGAACTCTAATTCAGCAGAATTTTGCTGTCTCTGTCTAGTTCTGC  324

seq1  ATTACTTGACTTACAGCCACAATCTTCCAATTGATTTACCCATTTCTCCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTGACTTACAGCCACAATCTTCCAATTGATTTACCCATTTCTCCA  374

seq1  TCTTGCCTTCAACATGGGTCCTTCACAATATCAAGAATGCACAAAGCTCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCTTCAACATGGGTCCTTCACAATATCAAGAATGCACAAAGCTCT  424

seq1  CTCTATGACTCTGCTGTGCTTGGAATTTTGTGTAATTGTAACCAGAATTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGACTCTGCTGTGCTTGGAATTTTGTGTAATTGTAACCAGAATTC  474

seq1  TAGAGAGAAGAATTTAAAGGGGCTGCTCAGTTTCAGCCATAACAGTGCCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGAAGAATTTAAAGGGGCTGCTCAGTTTCAGCCATAACAGTGCCC  524

seq1  AGCCCTTAGCTCCACTATTTCTGTATTGACAGTCAAGCAGAACACCATAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTAGCTCCACTATTTCTGTATTGACAGTCAAGCAGAACACCATAG  574

seq1  CACCAGGAGCAAGGAAAATAGTAAGCAGAGGATGTGGGCAGAACAAGGAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGGAGCAAGGAAAATAGTAAGCAGAGGATGTGGGCAGAACAAGGAT  624

seq1  CAGATAGAATCCTCAAGACATGTTCCTCGGATCTAATTCCTCCAGTCAGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGAATCCTCAAGACATGTTCCTCGGATCTAATTCCTCCAGTCAGG  674

seq1  CCTGGTGCTCACTACCTTTTGAAAAGCAACACCAGCAAGGGAACAAGAGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGCTCACTACCTTTTGAAAAGCAACACCAGCAAGGGAACAAGAGC  724

seq1  AACTCATGAACCCTTTGGGGCATCCTGTACTGCTCGACTTCTCCCAAACT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATGAACCCTTTGGGGCATCCTGTACTGCTCGACTTCTCCCAAACT  774

seq1  TCAGCAAACAAAATGTTTCCTCCCTCTGTCACTCAACTTTCAGTCTTTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAAACAAAATGTTTCCTCCCTCTGTCACTCAACTTTCAGTCTTTTT  824

seq1  TTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGACTGTCCTGGAACGCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGACTGTCCTGGAACGCA  874

seq1  CTCTGTAGACCAGGCTGGCCTCGAACTCAGAAGTCCGCCTGCCTCTGCCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAGACCAGGCTGGCCTCGAACTCAGAAGTCCGCCTGCCTCTGCCT  924

seq1  CCTAAATGCTGGGATTAAAGGCATACGCCACCACGCCCAGCCTCAGTCAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAATGCTGGGATTAAAGGCATACGCCACCACGCCCAGCCTCAGTCAA  974

seq1  CTTTCTTAAACTCCTTGATTTGGACAGATTTTCTTTCTCTTCATCTTTGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTAAACTCCTTGATTTGGACAGATTTTCTTTCTCTTCATCTTTGA  1024

seq1  CTCTAGGCTTCATATTCTGTCTATGTTTCCTATCCATGTTGATGATTTAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGCTTCATATTCTGTCTATGTTTCCTATCCATGTTGATGATTTAA  1074

seq1  TGAGATTCCCTTCAAAGCTGAAACTTGATGAGTTTCCAGTCAGTTGAATT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTCCCTTCAAAGCTGAAACTTGATGAGTTTCCAGTCAGTTGAATT  1124

seq1  C  1149
      |
seq2  C  1125