BAC Information

Click to search

BAC

Clone NameB6Ng01-272H12
Chromosome4 (Build37)5 (Build37)
Map Location 61,218,036 - 61,219,16419,823,631 - 19,823,737
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100041687, LOC667221, LOC100038948, LOC620997, Mup1, LOC620942, LOC100039008, LOC100039028, LOC620982, LOC100039054, LOC100039063, LOC667234, LOC100039089, LOC667239, LOC100039116, LOC667242, LOC100039150, LOC100039019, LOC100039177, LOC621093
Downstream geneLOC100039206, LOC621127, LOC100039228, LOC384021, LOC100039247, LOC667278, Mup5, LOC435785, LOC667295, LOC100039305, LOC546832, OTTMUSG00000007485, Mup3, LOC100039345, OTTMUSG00000000231, Zfp37, Slc31a2, Fkbp15, Slc31a1, Cdc26, Prpf4, Rnf183, Wdr31, Bspry, Hdhd3, Alad, Pole3, 4933430I17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272H12.bB6Ng01-272H12.g
ACCGA074287GA074288
length1,128961
definitionB6Ng01-272H12.b B6Ng01-272H12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,218,036 - 61,219,164)(19,823,631 - 19,823,737)
sequence
gaattcacttttaaagttttcacatccgtggctaaagcatttttaggttc
tgtaatttaaaaccactaatcatgcttcagataaaaaaaaaatttactcc
tattatccgtaggtttgatcttctcattgtgtcctggatttcctggatgt
tttgagtttggatctttttgcatttttctatttctttgatagttgtgtcc
tatggaatcttctgtacctgagattctcccttccatctcttgtattctgt
tgctgaggctcacatctatggttcctgatttctttcctagggtttccatc
tccagagttgtctccctttgggttttgttcattgtgtctacttccatttt
tagatcttggatggttttgttcaatttcatcgcctgtttgttggtgtttt
cctgtaattcttaagggatttttgtgtttcttctacttgtttagcagtgg
tgttctcctgtaattccttgagggacttttgtacttcctttttaagggct
tctacctctttagcactgttctcttgtatttctttaagtgagttattaat
gcccttctttaaatcttctaccaccattatgagatatgattttaaataca
tgtcttgctttttgggtgtgctggggtatccaggactcgttgtggtgggc
gtactgggttttgatgattcccagtgttcttggtttctgttagtaagatt
cttacctttgccttttgccatctggaaatctggtgtttaatgatcaagct
gtctctggttggagcttgatcctcctgtgattttgttagcctctgtcagc
actcctgggagtccaactctcacctgagttccagtggtcagagcactctc
tgtaaggcaaactctcctcttgcagggcaggtgtccagcagtctggaacg
ctgatactcctcctgagttctggggtcagaaccctccctgtaagccaact
ctcctctggcaaggaatgtgcccaggggtctgggtctcagctcttcctcc
tagctgaggatgatggctgagggaaccttaccagagcttctgttgcttaa
tattggccatgtgctctcagttgtcaaggagttcctgggtgtgctaggtc
tgtggttggagagtgatctctggtgtcc
gaattcattaatttttcagtcctcaaggttggaagtcttagctgtttttc
agtatatgtctgaattccaaagaagtaggccctattggaaggaacatggg
gcccctaattaaggagctagagaaagtaaccaaggggctaatggggtctg
caaccctgtaggaggatcaaaaatattagctaactagtacctcccagatc
tatgtctctagttgcatatgtagcagaggatgacctagttggccatcaat
aagaagagaggcccttggttttgtgaagatcagatgtcccagtacagggg
gatgccgtgccagcatgcagaagtgggtagtttgaggagcagggcatgaa
gagggtataggcgacttttgggaaagcatttgaaatgtaaatgaagaaaa
tatctaataagaaaaaaagtaggtcctaatgctcatgaaggaatagactt
gctagcaagagtaaggggaagctctctagagggaacttccttcttccatg
tcttttatatatgctggcaaaacaaggtatgacccagttttaggtgtatc
ttcgatcctcaaaaaatctggattaaaggtgtgtctttccatcttcaatt
gaattttatttctcaaagagatagatttattatctatcaaaggtgtactg
acctgctaaagttttagttgattccagatgaggttaacaacaagaatagc
cattacaagcccaccccttgtcatctagacatacattcatatatcccttt
ttcatgcttatcttccaaatggaagtaatagccaagtcataattatacct
atatacctatcccatggacaatctcaaaagcattatatatttaacagagt
cataatttgtgtacaacatgatataaatatccctcatacaaccataaatg
cattataaatttttaatatgtccacttcaagggaaattacaagtagttca
tgatctttaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_61218036_61219164
seq2: B6Ng01-272H12.b_47_1172

seq1  ATTCACTTTTAAAGTTTTCACATCCGTGGCTAAAGCATTTTTAGGTTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTTTTAAAGTTTTCACATCCGTGGCTAAAGCATTTTTAGGTTCTG  50

seq1  TAATTTAAAACCACTAATCATGCTTCAGAT-AAAAAAGAATTTACTCCTA  99
      |||||||||||||||||||||||||||||| |||||| ||||||||||||
seq2  TAATTTAAAACCACTAATCATGCTTCAGATAAAAAAAAAATTTACTCCTA  100

seq1  TTATCCGTAGGTTTGATCTTCTCATTGTGTCCTGGATTTCCTGGATGTTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCGTAGGTTTGATCTTCTCATTGTGTCCTGGATTTCCTGGATGTTT  150

seq1  TGAGTTTCGATCTTTTTGCATTTTTCTATTTCTTTGATAGTTGTGTCCTA  199
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTGGATCTTTTTGCATTTTTCTATTTCTTTGATAGTTGTGTCCTA  200

seq1  TGGAATCTTCTGTACCTGAGATTCTCCCTTCCATCTCTTGTATTCTGTTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATCTTCTGTACCTGAGATTCTCCCTTCCATCTCTTGTATTCTGTTG  250

seq1  CTGATGCTCACATCTATGGTTCCTGATTTCTTTCCTAGGGTTTCCATCTC  299
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCTCACATCTATGGTTCCTGATTTCTTTCCTAGGGTTTCCATCTC  300

seq1  CAGAGTTGTCTCCCTTTGGGTTTTCTTCATTGTTTCTACTTCCATTTTTA  349
      |||||||||||||||||||||||| |||||||| ||||||||||||||||
seq2  CAGAGTTGTCTCCCTTTGGGTTTTGTTCATTGTGTCTACTTCCATTTTTA  350

seq1  GATCTTGGATGGTTTTGTTCAATTTCATCGCCTGTTTGTTGGTGTTTTCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTGGATGGTTTTGTTCAATTTCATCGCCTGTTTGTTGGTGTTTTCC  400

seq1  TGTAATTCTTAAGGGATTTTTGTGTTTCTTCTACTTGTTTAGCAGTGGTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTCTTAAGGGATTTTTGTGTTTCTTCTACTTGTTTAGCAGTGGTG  450

seq1  TTCTCCTGTAATTCCTTGAGGGACTTTTGTACTTCCTTTTTAAGGGCTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTGTAATTCCTTGAGGGACTTTTGTACTTCCTTTTTAAGGGCTTC  500

seq1  TACCTCTTTAGCACTGTTCTCCTGTATTTCTTTAAGTGAGTTATTAATGC  549
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TACCTCTTTAGCACTGTTCTCTTGTATTTCTTTAAGTGAGTTATTAATGC  550

seq1  CCTTCTTTAAATCTTCTACCACCATTATGAGATATGATTTTAAATACATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTTAAATCTTCTACCACCATTATGAGATATGATTTTAAATACATG  600

seq1  TCTTGCTTTTTGGGTGTGCTGGGGTATCCAGGACTCGTTGTGGTGGGCGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTTTTTGGGTGTGCTGGGGTATCCAGGACTCGTTGTGGTGGGCGT  650

seq1  ACTGGGTTTTGATGATTCCCAGTGTTCTTGGTTTCTGTTAGTAAGATTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTTTTGATGATTCCCAGTGTTCTTGGTTTCTGTTAGTAAGATTCT  700

seq1  TACCTTTGCCTTTTGCCATCTGGAAATCTCTGGTG-TTAATGATCAAGCT  748
      ||||||||||||||||||||||||||  ||||||| ||||||||||||||
seq2  TACCTTTGCCTTTTGCCATCTGGAAA--TCTGGTGTTTAATGATCAAGCT  748

seq1  GTCTCTGGTTGGAGCTTGATCCTCCTGTGATTCTGTTAGCCTCTGTCAGC  798
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTCTCTGGTTGGAGCTTGATCCTCCTGTGATTTTGTTAGCCTCTGTCAGC  798

seq1  ACTCCTGGGAGTCCAACTCTCACCTGATTTCCAGTGGTCAGAGCACTCTC  848
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACTCCTGGGAGTCCAACTCTCACCTGAGTTCCAGTGGTCAGAGCACTCTC  848

seq1  TGT-AGGCAAACTCTCCTCTTGCAGGGCAGGTGTCCAGCAGTCTGGAACG  897
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGGCAAACTCTCCTCTTGCAGGGCAGGTGTCCAGCAGTCTGGAACG  898

seq1  CTGATACTCCTCCTGAGTTCTGGGGTCAGAACCCTCCCTGTAGGCCAACT  947
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTGATACTCCTCCTGAGTTCTGGGGTCAGAACCCTCCCTGTAAGCCAACT  948

seq1  CTCCTCTGGCAAGGAATGTGCCCAGGGGTCTGGGTCTCAGCTCTGCCTCC  997
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTCCTCTGGCAAGGAATGTGCCCAGGGGTCTGGGTCTCAGCTCTTCCTCC  998

seq1  TAGCTGAGGATGAAGGCCTGAGGGGACCCTTACCAAGAAGCTCTGTTGCC  1047
      ||||||||||||| || |||| |||| ||||||| |||   |||||||| 
seq2  TAGCTGAGGATGATGG-CTGA-GGGAACCTTACC-AGAGCTTCTGTTGCT  1045

seq1  T-CTATTGGCCATGTGCTCTCAGTTGATCAGGAGTTCCTGGGTGTGCTAG  1096
      |  |||||||||||||||||||||||   |||||||||||||||||||||
seq2  TAATATTGGCCATGTGCTCTCAGTTGTCAAGGAGTTCCTGGGTGTGCTAG  1095

seq1  GGGTCCTGTGG-TGTGGAGTGTCCTCTGGTGTCC  1129
      |    |||||| ||  |||||  |||||||||||
seq2  G---TCTGTGGTTGGAGAGTGATCTCTGGTGTCC  1126

seq1: chr5_19823631_19823737
seq2: B6Ng01-272H12.g_267_481 (reverse)

seq1  --TTTTTTAATTAGTTATTTTCCTCATTTACATTTCAAATGCCATCCC--  46
        |||| | ||||| ||||||| |||||||||||||||||||  ||||  
seq2  TTTTTTCTTATTAGATATTTTCTTCATTTACATTTCAAATGCTTTCCCAA  50

seq1  --CTTTCCTAGTTTCCTCTCCA-------------AAAGT----------  71
         |  |||| |  ||||| ||             ||| |          
seq2  AAGTCGCCTA-TACCCTCTTCATGCCCTGCTCCTCAAACTACCCACTTCT  99

seq1  ------------------CCCCTATAC-----------------------  80
                        ||||| |||                       
seq2  GCATGCTGGCACGGCATCCCCCTGTACTGGGACATCTGATCTTCACAAAA  149

seq1  ---------------------------------------CCTCTGCTACA  91
                                             |||||||||||
seq2  CCAAGGGCCTCTCTTCTTATTGATGGCCAACTAGGTCATCCTCTGCTACA  199

seq1  TATGCAACTAGAGACA  107
      ||||||||||||||||
seq2  TATGCAACTAGAGACA  215