BAC Information

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BAC

Clone NameB6Ng01-272L22
Chromosome4 (Build37)
Map Location 6,004,161 - 6,090,916
singlet/doubletdoublet
Overlap genenone
Upstream gene1700012H17Rik, LOC669309
Downstream gene3110003A22Rik, Cyp7a1, Sdcbp, Nsmaf, LOC100039397, LOC100039414, Tox, LOC100039421, LOC666700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272L22.bB6Ng01-272L22.g
ACCGA074493GA074494
length1,165965
definitionB6Ng01-272L22.b B6Ng01-272L22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,004,161 - 6,005,047)(6,090,384 - 6,090,916)
sequence
gaattcattttaggaaagattcctgttattaatatgcttctcctgttatt
attaaacatatataataatcactaagtattagaccatccttttttagcag
atctctgcagatctacaaaatatagtgtattgtagtgatgctataagaat
aaatagatgacttcttgagtcttaatgatgatgctataagaacttctaaa
attatatcggtgattattaagctcttttatagtgggactgctattagagc
cttttcttatagtcaaaactgcaatgagaactctgtcagtctcccatgtg
tcaccagttaattgcctgttagatagtaaccagactttttcctactcaaa
gcacattccaagaggttgtaaaacaattaactaaaggtcataaaagggaa
ctaatgatttattataggtgtaggacagaaggatcttgactgggtttatc
tatacaaaacttcactaataacttagttatggattctcactttcaatgaa
cctgtggagctctgatgtttagccagataattactcctaatggatatgca
tgtaaacattctctgttgtaaacttctatttcaatttatggtttgatatt
ctgtgtgaatttgtggtgaactttttaacatgtgatcatgtatctgaaag
atattttaagtgctaagggcaaagagaatcctcacaactgagctgagaga
ggaactgggctgaggaaaacttttttggacagaatacttcttagacaaag
aggaaaagctaggagaatttttccctttcccctcttaggatctttccact
ttctccttagatagctttcacaggaatcgttttacaacttagtaatatac
actataatcacgtctcaacatgtccctttttcttcctgtgacttccgact
agtaggctgaaagttagagcagtgcagttcctgttgagatagtacaaagt
ggttacttaatcctttgctgttttaggaagaggttgctaagtgccagaaa
ctgcagtttcttgacctcacagaacacagagcagttcagctatagtagca
aagtacttagacttgataataaaatttattatacagcaccttaaatatct
cagaagaacaagtcttacacctgttctcgagacaagcttactcacgaagt
ctcttacccttccac

gaattcagtactgcccctggtattacactatctctttgagtaaaagttag
gtcactgcccttcacaggaatctaccatcaccaaggaagaaagaagtttc
tgaccgtaggagaaaccagaatagatacttagaattatagctgagttaca
cctatatacaggaatttacaatggtttaggaagtagatcaggctgtggtt
ttagagtattgcattattcatgagatggttagctagaacggaactcccta
gttagaaccatgacttgggtgtgaaagcccttgccctaggagtgaaaagt
tctcacacctggcttctaagactatagctgaccttagatagggctgactt
tgtctcagttattttattgcccagttcctgccagtctttgtgttttcatt
catctgttctgtgtaagagtcattaagcatccggttacctcatttgtacc
ttgccggtatgtcacccaccttccttattgtcttctgcataaaaattctg
atgttcgatttgaaaaattacattcagattcaacacaacctctcctgtgt
gcgtctgtccgtcaattcatcctacgctttgtccactcgcgagtagagac
ctgttccacgcagacaaaggggcccagagggtctgtggcagaaaagtagt
aaggtaaagaaaggaatgtagaatgttagagatgttgtagatttagatag
gagatgactggggttacccacagtgtgggatgtgcttcacatggaatgtg
caagccatagactatccacagcaccaagaaataaataactaaatcaaagg
aatgtgatgttaatagtgcaaaattatttacagttatattttatatagta
gttatattccttaaattatatatgtcaattattgtaagtatacataacat
tatatagaattttatttataatactcatgggaaatattcttttaataata
ggttattttaagttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_6004161_6005047
seq2: B6Ng01-272L22.b_320_1210

seq1  TGAGAACTCTGTCAGTCTCCCATGTGTCACCAGTTAATTGCCTGTTAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACTCTGTCAGTCTCCCATGTGTCACCAGTTAATTGCCTGTTAGAT  50

seq1  AGTAACCAGACTTTTTCCTACTCAAAGCACATTCCAAGAGGTTGTAAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACCAGACTTTTTCCTACTCAAAGCACATTCCAAGAGGTTGTAAAAC  100

seq1  AATTAACTAAAGGTCATAAAAGGGAACTAATGATTTATTATAGGTGTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACTAAAGGTCATAAAAGGGAACTAATGATTTATTATAGGTGTAGG  150

seq1  ACAGAAGGATCTTGACTGGGTTTATCTATACAAAACTTCACTAATAACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGGATCTTGACTGGGTTTATCTATACAAAACTTCACTAATAACTT  200

seq1  AGTTATGGATTCTCACTTTCAATGAACCTGTGGAGCTCTGATGTTTAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGGATTCTCACTTTCAATGAACCTGTGGAGCTCTGATGTTTAGCC  250

seq1  AGATAATTACTCCTAATGGATATGCATGTAAACATTCTCTGTTGTAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATTACTCCTAATGGATATGCATGTAAACATTCTCTGTTGTAAACT  300

seq1  TCTATTTCAATTTATGGTTTGATATTCTGTGTGAATTTGTGGTGAACTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTCAATTTATGGTTTGATATTCTGTGTGAATTTGTGGTGAACTTT  350

seq1  TTAACATGTGATCATGTATCTGAAAGATATTTTAAGTGCTAAGGGCAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATGTGATCATGTATCTGAAAGATATTTTAAGTGCTAAGGGCAAAG  400

seq1  AGAATCCTCACAACTGAGCTGAGAGAGGAACTGGGCTGAGGAAAACTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCCTCACAACTGAGCTGAGAGAGGAACTGGGCTGAGGAAAACTTTT  450

seq1  TTGGACAGAATACTTCTTAGACAAAGAGGAAAAGCTAGGAGAATTTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACAGAATACTTCTTAGACAAAGAGGAAAAGCTAGGAGAATTTTTCC  500

seq1  CTTTCCCCTCTTAGGATCTTTCCACTTTCTCCTTAGATAGCTTTCACAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCCTCTTAGGATCTTTCCACTTTCTCCTTAGATAGCTTTCACAGG  550

seq1  AATCGTTTTACAACTTAGTAATATACACTATAATCACGTCTCAACATGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGTTTTACAACTTAGTAATATACACTATAATCACGTCTCAACATGTC  600

seq1  CCTTTTTCTTCCTGTGACTTCCGACTAGTAGGCTGAAAGTTAGAGCAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTCTTCCTGTGACTTCCGACTAGTAGGCTGAAAGTTAGAGCAGTG  650

seq1  CAGTTCCTGTTGAGATAGTACAAAGGTGGTTTACTTAATCCTTTGCTGTT  700
      |||||||||||||||||||||||| |||| ||||||||||||||||||||
seq2  CAGTTCCTGTTGAGATAGTACAAA-GTGG-TTACTTAATCCTTTGCTGTT  698

seq1  TTAGGAAGAGG-TGCTAAGTGCCAGAAACTGCAGTTTC-TGACCTCAACA  748
      ||||||||||| |||||||||||||||||||||||||| ||||||| |||
seq2  TTAGGAAGAGGTTGCTAAGTGCCAGAAACTGCAGTTTCTTGACCTC-ACA  747

seq1  GAACACAGAAGGCAGGTCAGCTATAGTAGCAAAGTAACTTAGACTTTGAT  798
      |||||||||  |||| ||||||||||||||||||| |||||||| |||||
seq2  GAACACAGA--GCAGTTCAGCTATAGTAGCAAAGT-ACTTAGAC-TTGAT  793

seq1  AAATAAAATTTTATTATACAGCAACCCTAAATATCTCAGAAGACAAAGTC  848
       ||||||| ||||||||||||| ||| ||||||||||||||||  |||||
seq2  -AATAAAA-TTTATTATACAGC-ACCTTAAATATCTCAGAAGAACAAGTC  840

seq1  TTACACCTGTATCTC---AGAAG-------ACAAAG--TCTTACCC-TCC  885
      |||||||||| ||||   | |||       || |||  |||||||| |||
seq2  TTACACCTGT-TCTCGAGACAAGCTTACTCACGAAGTCTCTTACCCTTCC  889

seq1  AC  887
      ||
seq2  AC  891


seq1: chr4_6090384_6090916
seq2: B6Ng01-272L22.g_501_1032 (reverse)

seq1  AAACTTAAAATAACCTATTATTAAAAGAATATTTCCCATGAGTATTATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTAAAATAACCTATTATTAAAAGAATATTTCCCATGAGTATTATAA  50

seq1  ATAAAATTCTATATAATGTTTATGTATACTTACAATAATTGACATATATA  100
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATAAAATTCTATATAATG-TTATGTATACTTACAATAATTGACATATATA  99

seq1  ATTTAAGGAATATAACTACTATATAAAATATAACTGTAAATAATTTTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGGAATATAACTACTATATAAAATATAACTGTAAATAATTTTGCA  149

seq1  CTATTAACATCACATTCCTTTGATTTAGTTATTTATTTCTTGGTGCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAACATCACATTCCTTTGATTTAGTTATTTATTTCTTGGTGCTGTG  199

seq1  GATAGTCTATGGCTTGCACATTCCATGTGAAGCACATCCCACACTGTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTCTATGGCTTGCACATTCCATGTGAAGCACATCCCACACTGTGGG  249

seq1  TAACCCCAGTCATCTCCTATCTAAATCTACAACATCTCTAACATTCTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCCAGTCATCTCCTATCTAAATCTACAACATCTCTAACATTCTACA  299

seq1  TTCCTTTCTTTACCTTACTACTTTTCTGCCACAGACCCTCTGGGCCCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTCTTTACCTTACTACTTTTCTGCCACAGACCCTCTGGGCCCCTT  349

seq1  TGTCTGCGTGGAACAGGTCTCTACTCGCGAGTGGACAAAGCGTAGGATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCGTGGAACAGGTCTCTACTCGCGAGTGGACAAAGCGTAGGATGA  399

seq1  ATTGACGGACAGACGCACACAGGAGAGGTTGTGTTGAATCTGAATGTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACGGACAGACGCACACAGGAGAGGTTGTGTTGAATCTGAATGTAAT  449

seq1  TTTTCAAATCGAACATCAGAATTTTTATGCAGAAGACAATAAGGAAGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAATCGAACATCAGAATTTTTATGCAGAAGACAATAAGGAAGGTG  499

seq1  GGTGACATACCGGCAAGGTACAAATGAGGTAAC  533
      |||||||||||||||||||||||||||||||||
seq2  GGTGACATACCGGCAAGGTACAAATGAGGTAAC  532


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