BAC Information

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BAC

Clone NameB6Ng01-275A17
Chromosome4 (Build37)
Map Location 50,384,366 - 50,385,532
singlet/doubletsinglet
Overlap genenone
Upstream geneC730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2, LOC666663
Downstream geneLOC100040979, LOC666681, LOC100040814
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275A17.bB6Ng01-275A17.g
ACCGA076187GA076188
length1,1801,164
definitionB6Ng01-275A17.b B6Ng01-275A17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatttcacttaaattcaaacatgtacctttccttaattttgaatc
cacctccacaccactttacagataaaaggatttaagtaataccaataaaa
tctattacttacttcataatttcaaattggggaaatgactagaacatgaa
ttggttttgattgtgtagtgtgattacatacccatgtgaacttgcagtag
tttgcacacctggagctcaggcagaaagaatcagatcaggatgcagtcag
cagaggtcacaccgatctccctgtcttttctttttctggtcccctcactg
attcctttctccatttccatattcctcccttttcttcttttttctctttg
caattttccttcttctcccttattaagccttttaaattgtgaatgatatg
gttccaaagtaaggaaaaagaagtttcagggatggagccctctattagga
accaagacgtggttgtccatagttcttagctggaaatccattaacccttt
tgttgttcatgatcaccatttgcaagtgtatattcatggacaatttcata
gcacactttatgcaaaacatcactcatttgttcattagctcattcattta
ttctgatctaaaaactggtaactacctaataagtgtgaaatactcagtta
tatttgaggtagacaaaacatatgacttgatgctttttatgtttagtatt
taaaaaaatggctgggaaatacacatttaataagataccatcaatattac
tagcattatttaacattatgcctagtgaaatgttcatgcataaatcatac
tataaactagagatcttttatgagttgtgtgtgtgtctatgtgtgataac
tgaagaaattaaaatgtgaataatattttcaaaataccacaactattgaa
taaaaaagcctctatggtaagttaattctttgatgtttaaatttagactt
cttgaatcatattacatcatataccgtgatagtgtaggaatttgatagtt
taacaggatatgatcgaatgtttgagatgctggagttttcaaatgagcaa
ataacttcagctacagttttcacattatgggactcactggggagcacaag
acaaggcatttaggcacatgttcttttattgtctattaaatatatcaccc
ttctctttgaaagtgctgacataatgtatt
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaactg
ttcaacatccttaatcatcagggaaatggaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttatcatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacagtg
gagtactactcagctattaaaaagaatttatgaaattcctagccaaatgg
atggacctggagggcatcatcctgagtgaggtaacacattcacaaaggat
ctcacacaatatgtactcactgataagtggatattagccccaaacctagg
atacccaagatataagatacaatttgctaaacacatgaaactcaagaaga
atgaagactgaagtgtggacactatgcccctccttagaattgggaacaaa
acacccatggaaggagttacagagacaaagtttggagctgagatgaaagg
atggaccatgtagagactgccatatccagggatccaccccataatcagca
tccaaacgctgacaccattgcatatactagcatgattttatcgaaaggac
ccagatgtagctgtctcttgtgagactatgccagggcctagcaaacacag
aagtggatgctcacagtcagctaatggatggatcacagggctcccaatgg
agagctagagaaagtacccagagctaagggatctgcaaccctataggtga
cacattatgactaaccagtatcccgagctctgactctagctgcatatgta
tcaaagatgctagtcgcatcactgggaaagagagtccaatggacatgcaa
cttatatgccagtacaggcaacgtcaaggcaaataaggggcaatgcggtg
gtgtacatggagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_50384366_50385532
seq2: B6Ng01-275A17.b_45_1224

seq1  GAATTCATTTCACTTAAATTCAAACATGTACCTTTCCTTAATTTTGAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCACTTAAATTCAAACATGTACCTTTCCTTAATTTTGAATC  50

seq1  CACCTCCACACCACTTTACAGATAAAAGGATTTAAGTAATACCAATAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCACACCACTTTACAGATAAAAGGATTTAAGTAATACCAATAAAA  100

seq1  TCTATTACTTACTTCATAATTTCAAATTGGGGAAATGACTAGAACATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTACTTACTTCATAATTTCAAATTGGGGAAATGACTAGAACATGAA  150

seq1  TTGGTTTTGATTGTGTAGTGTGATTACATACCCATGTGAACTTGCAGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTGATTGTGTAGTGTGATTACATACCCATGTGAACTTGCAGTAG  200

seq1  TTTGCACACCTGGAGCTCAGGCAGAAAGAATCAGATCAGGATGCAGTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCACACCTGGAGCTCAGGCAGAAAGAATCAGATCAGGATGCAGTCAG  250

seq1  CAGAGGTCACACCGATCTCCCTGTCTTTTCTTTTTCTGGTCCCCTCACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTCACACCGATCTCCCTGTCTTTTCTTTTTCTGGTCCCCTCACTG  300

seq1  ATTCCTTTCTCCATTTCCATATTCCTCCCTTTTCTTCTTTTTTCTCTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTTCTCCATTTCCATATTCCTCCCTTTTCTTCTTTTTTCTCTTTG  350

seq1  CAATTTTCCTTCTTCTCCCTTATTAAGCCTTTTAAATTGTGAATGATATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTCCTTCTTCTCCCTTATTAAGCCTTTTAAATTGTGAATGATATG  400

seq1  GTTCCAAAGTAAGGAAAAAGAAGTTTCAGGGATGGAGCCCTCTATTAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAAAGTAAGGAAAAAGAAGTTTCAGGGATGGAGCCCTCTATTAGGA  450

seq1  ACCAAGACGTGGTTGTCCATAGTTCTTAGCTGGAAATCCATTAACCCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGACGTGGTTGTCCATAGTTCTTAGCTGGAAATCCATTAACCCTTT  500

seq1  TGTTGTTCATGATCACCATTTGCAAGTGTATATTCATGGACAATTTCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTCATGATCACCATTTGCAAGTGTATATTCATGGACAATTTCATA  550

seq1  GCACACTTTATGCAAAACATCACTCATTTGTTCATTAGCTCATTCATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTTTATGCAAAACATCACTCATTTGTTCATTAGCTCATTCATTTA  600

seq1  TTCTGATCTAAAAACTGGTAACTACCTAATAAGTGTGAAATACTCAGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATCTAAAAACTGGTAACTACCTAATAAGTGTGAAATACTCAGTTA  650

seq1  TATTTGAGGTAGACAAAACATATGACTTGATGCTTTTTATGTTTAGTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAGGTAGACAAAACATATGACTTGATGCTTTTTATGTTTAGTATT  700

seq1  TAAAAAAATGGCTGGGAAATACACATTTAATAAGATACCATCAATATTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAATGGCTGGGAAATACACATTTAATAAGATACCATCAATATTAC  750

seq1  TAGCATTATTTAACATTATGCCTAGTGAAATGTTCATGCATAAATCATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTATTTAACATTATGCCTAGTGAAATGTTCATGCATAAATCATAC  800

seq1  TATAAACTAGAGATCTTTTATGAGTTGTGTGTGTGTCTATGTGTGATAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACTAGAGATCTTTTATGAGTTGTGTGTGTGTCTATGTGTGATAAC  850

seq1  TGAAGAAATTAAAATGTGAATAATATTTTCAAAATACCACAACTATTGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAATTAAAATGTGAATAATATTTTCAAAATACCACAACTATTGAA  900

seq1  TAAAAAAGCCTCTATGGTAAGTTAATTCTTTGATGTTTAAATTTAGACTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAGCCTCTATGGTAAGTTAATTCTTTGATGTTTAAATTTAGACTT  950

seq1  CTTGAATCATATTACATCATATACCGTGATAGTGTAGGAA-TTGATAGTT  999
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTTGAATCATATTACATCATATACCGTGATAGTGTAGGAATTTGATAGTT  1000

seq1  TAACAGGATATGATCGAATGTTTGAGATGCT-GAGTTTTCAAATGAGCAA  1048
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TAACAGGATATGATCGAATGTTTGAGATGCTGGAGTTTTCAAATGAGCAA  1050

seq1  ATAACTTCAGCTACAGTTTTCACA-TAT-GGACTCACT--GGAGCAC-AG  1093
      |||||||||||||||||||||||| ||| |||||||||  ||||||| ||
seq2  ATAACTTCAGCTACAGTTTTCACATTATGGGACTCACTGGGGAGCACAAG  1100

seq1  ACAA-GCATTTA-GCACATGTTCTTTTATTGTCTCT--ATAATATCACCC  1139
      |||| ||||||| ||||||||||||||||||||| |  |  |||||||||
seq2  ACAAGGCATTTAGGCACATGTTCTTTTATTGTCTATTAAATATATCACCC  1150

seq1  T--CCTTGAAAAGTGCTGACTAATTGTATT  1167
      |   |||  |||||||||||  | ||||||
seq2  TTCTCTTTGAAAGTGCTGACATAATGTATT  1180