BAC Information

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BAC

Clone NameB6Ng01-275J13
Chromosome4 (Build37)
Map Location 134,077,969 - 134,216,083
singlet/doubletdoublet
Overlap gene2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1
Upstream gene1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7
Downstream geneLdlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3, Clic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275J13.bB6Ng01-275J13.g
ACCGA076593GA076594
length1,205448
definitionB6Ng01-275J13.b B6Ng01-275J13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,214,890 - 134,216,083)(134,077,969 - 134,078,422)
sequence
gaattcagtcttgcgggagtgagagagagagccaccggtcctcattaggc
acctagaagggccgccacgtgtcgtccatcaccacagacctagaaaaatg
agaagcaagcctgcctgagcaggctgatgaatgcagacaccaggagcgct
tatggggtggcagctctccggctccgggatgaatgagtccgggacccagt
cgctttatgacatttgtaaggctgagccgtgctgtttgctgttgctgcag
agccccctcctagtgcgagcagatagccttctctgtcggtttggcaagct
tttctagccgagatctgcaagctatgctggagtccgtgctgatgggggtc
tggggtgcacaaggggatttcttaggctgcagatgcagaaacaagcttat
cctttttagtgttcactaggggcgcagtccagctgttactgtagaaccat
tcacagccaccccacccccatttgctgaggggcgctgggttttctttcat
agtgtttaaccccagttgaatttctcgtgttcattgttgtctgtttgatc
atacgaggatgtgtgagctacgagtcacacagagtgctatgcagtcggtc
ctcagggagtgttatctgagtggatgaggtggaagcagggacaggaagag
gcaaagattgcagtcaggctgggtccaaaccttcttctactattggctgt
gtgtctttggttcctgtcccttgtctgtgatggctatgtgtctcaggttc
ctgtctgtcccttgtctgtgatggctatgtgtcttaggtttctgtcccct
gtctgtgaatgctgtgactctcaggttcttgtttgtcccttgtttgtgat
ggctgtgtgtcctgggttcttgtctcctgtctgtgagctaggttttatac
ctgcttcctggagtggccatgggctaggaggttgtcgtgttccgctctcg
accagcaagaacgacacgaccaccaagttcttctacagcaacttcagtct
ttcatcttctcctcgcttcatcttttttcctcatctttcctcccccgaaa
ccagggcctcctccacttcttatatactctcagttccccatccactcaca
gcaaggcacatcacttcacagcatgccagcttcagtcaatttcaagggcg
ccaggccgtgtcactactatatggacttgttttaactgccagaccattca
tggtg
tttttttttgaggggggggggtttcaagacaggatttctctgtgtagccc
tggctgtcctggaactcactttgtagaccaggctggcctcgaactcagaa
atccgcctgcctctgccgagtgctgggtttaaaggcgtgcgccaccacgc
ccagtgaagattctcacagaatagtttctgcagtgtaccttattagagaa
gtaaaaaaagaaatccaacattctgctttctaaaatggtatctttatata
atttgagtggactaggaatcctgtttcattcctctttaagggagaacggg
atccatcccacacttactgaaatgggtaggctagacagacaccagtttgt
tttcagtttctaactggttgatttagcatcctactatcttcattggcttt
cccatgaaatgtctgaggagggcggggctgggtaggggagggtttagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_134214890_134216083
seq2: B6Ng01-275J13.b_42_1246 (reverse)

seq1  CACCATG-ATG--CTGGCAGTTTAAACAAGTCCATATTTGGTGGTGACAC  47
      ||||||| |||  ||||||||| |||||||||||||  | || |||||||
seq2  CACCATGAATGGTCTGGCAGTTAAAACAAGTCCATA--TAGTAGTGACAC  48

seq1  GCCCCTGCCGCCCT---GATTGGCTGAAGCT-GCATGCCTGGTGAGGTGA  93
      |  |||| ||||||    |||| |||||||| ||||||   |||| ||||
seq2  G-GCCTGGCGCCCTTGAAATTGACTGAAGCTGGCATGC--TGTGAAGTGA  95

seq1  TGTGGCCTGCTGTGAGTGGATGGGG-ACTGAGAGTATATAAG-AGTG--A  139
      |||| | |||||||||||||||||| |||||||||||||||| ||||   
seq2  TGTGCCTTGCTGTGAGTGGATGGGGAACTGAGAGTATATAAGAAGTGGAG  145

seq1  GAGGCCCTGGGTTCGGGGGA-GAAAGATGAGG-AAAAAGATGAAGCGA-G  186
      |||||||||| ||||||||| ||||||||||| ||||||||||||||| |
seq2  GAGGCCCTGGTTTCGGGGGAGGAAAGATGAGGAAAAAAGATGAAGCGAGG  195

seq1  AG-AGATG-AAGACTGAAGTTTGCTGTTAGAAGAAC-TGGTGGTCGTGTC  233
      || ||||| |||||||||| |||||| ||||||||| |||||||||||||
seq2  AGAAGATGAAAGACTGAAG-TTGCTG-TAGAAGAACTTGGTGGTCGTGTC  243

seq1  GTTCTTGCTGGTCGAGAGCGG-ACACGACAACCTCCTAGCCCATGGCCAC  282
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTTCTTGCTGGTCGAGAGCGGAACACGACAACCTCCTAGCCCATGGCCAC  293

seq1  TCCAGGAAGCAGGTATAAAACCTAGCTCACAGACAGGAGACAAGAACCCA  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGAAGCAGGTATAAAACCTAGCTCACAGACAGGAGACAAGAACCCA  343

seq1  GGACACACAGCCATCACAAACAAGGGACAAACAAGAACCTGAGAGTCACA  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACACAGCCATCACAAACAAGGGACAAACAAGAACCTGAGAGTCACA  393

seq1  GCATTCACAGACAGGGGACAGAAACCTAAGACACATAGCCATCACAGACA  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCACAGACAGGGGACAGAAACCTAAGACACATAGCCATCACAGACA  443

seq1  AGGGACAGACAGGAACCTGAGACACATAGCCATCACAGACAAGGGACAGG  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACAGACAGGAACCTGAGACACATAGCCATCACAGACAAGGGACAGG  493

seq1  AACCAAAGACACACAGCCAATAGTAGAAGAAGGTTTGGACCCAGCCTGAC  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAGACACACAGCCAATAGTAGAAGAAGGTTTGGACCCAGCCTGAC  543

seq1  TGCAATCTTTGCCTCTTCCTGTCCCTGCTTCCACCTCATCCACTCAGATA  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATCTTTGCCTCTTCCTGTCCCTGCTTCCACCTCATCCACTCAGATA  593

seq1  ACACTCCCTGAGGACCGACTGCATAGCACTCTGTGTGACTCGTAGCTCAC  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCCTGAGGACCGACTGCATAGCACTCTGTGTGACTCGTAGCTCAC  643

seq1  ACATCCTCGTATGATCAAACAGACAACAATGAACACGAGAAATTCAACTG  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTCGTATGATCAAACAGACAACAATGAACACGAGAAATTCAACTG  693

seq1  GGGTTAAACACTATGAAAGAAAACCCAGCGCCCCTCAGCAAATGGGGGTG  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTAAACACTATGAAAGAAAACCCAGCGCCCCTCAGCAAATGGGGGTG  743

seq1  GGGTGGCTGTGAATGGTTCTACAGTAACAGCTGGACTGCGCCCCTAGTGA  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGCTGTGAATGGTTCTACAGTAACAGCTGGACTGCGCCCCTAGTGA  793

seq1  ACACTAAAAAGGATAAGCTTGTTTCTGCATCTGCAGCCTAAGAAATCCCC  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAAAAAGGATAAGCTTGTTTCTGCATCTGCAGCCTAAGAAATCCCC  843

seq1  TTGTGCACCCCAGACCCCCATCAGCACGGACTCCAGCATAGCTTGCAGAT  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCACCCCAGACCCCCATCAGCACGGACTCCAGCATAGCTTGCAGAT  893

seq1  CTCGGCTAGAAAAGCTTGCCAAACCGACAGAGAAGGCTATCTGCTCGCAC  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGCTAGAAAAGCTTGCCAAACCGACAGAGAAGGCTATCTGCTCGCAC  943

seq1  TAGGAGGGGGCTCTGCAGCAACAGCAAACAGCACGGCTCAGCCTTACAAA  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGGGGGCTCTGCAGCAACAGCAAACAGCACGGCTCAGCCTTACAAA  993

seq1  TGTCATAAAGCGACTGGGTCCCGGACTCATTCATCCCGGAGCCGGAGAGC  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATAAAGCGACTGGGTCCCGGACTCATTCATCCCGGAGCCGGAGAGC  1043

seq1  TGCCACCCCATAAGCGCTCCTGGTGTCTGCATTCATCAGCCTGCTCAGGC  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCCCATAAGCGCTCCTGGTGTCTGCATTCATCAGCCTGCTCAGGC  1093

seq1  AGGCTTGCTTCTCATTTTTCTAGGTCTGTGGTGATGGACGACACGTGGCG  1132
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGCTTCTCATTTTTCTAGGTCTGTGGTGATGGACGACACGTGGCG  1143

seq1  GCCCTTCTAGGTGCCTAATGAGGACCGGTGGCTCTCTCTCTCACTCCCGC  1182
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTCTAGGTGCCTAATGAGGACCGGTGGCTCTCTCTCTCACTCCCGC  1193

seq1  AAGACTGAATTC  1194
      ||||||||||||
seq2  AAGACTGAATTC  1205

seq1: chr4_134077969_134078422
seq2: B6Ng01-275J13.g_65_518

seq1  GAATTCTTTTTTTTTGAGGGGGGGGGGTTTCAAGACAGGATTTCTCTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTTTTGAGGGGGGGGGGTTTCAAGACAGGATTTCTCTGTG  50

seq1  TAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAAC  100

seq1  TCAGAAATCCGCCTGCCTCTGCCGAGTGCTGGGTTTAAAGGCGTGCGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATCCGCCTGCCTCTGCCGAGTGCTGGGTTTAAAGGCGTGCGCCA  150

seq1  CCACGCCCAGTGAAGATTCTCACAGAATAGTTTCTGCAGTGTACCTTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCCCAGTGAAGATTCTCACAGAATAGTTTCTGCAGTGTACCTTATT  200

seq1  AGAGAAGTAAAAAAAGAAATCCAACATTCTGCTTTCTAAAATGGTATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGTAAAAAAAGAAATCCAACATTCTGCTTTCTAAAATGGTATCTT  250

seq1  TATATAATTTGAGTGGACTAGGAATCCTGTTTCATTCCTCTTTAAGGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAATTTGAGTGGACTAGGAATCCTGTTTCATTCCTCTTTAAGGGAG  300

seq1  AACGGGATCCATCCCACACTTACTGAAATGGGTAGGCTAGACAGACACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGGATCCATCCCACACTTACTGAAATGGGTAGGCTAGACAGACACCA  350

seq1  GTTTGTTTTCAGTTTCTAACTGGTTGATTTAGCATCCTACTATCTTCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTTCAGTTTCTAACTGGTTGATTTAGCATCCTACTATCTTCATT  400

seq1  GGCTTTCCCATGAAATGTCTGAGGAGGGCGGGGCTGGGTAGGGGAGGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCCCATGAAATGTCTGAGGAGGGCGGGGCTGGGTAGGGGAGGGTT  450

seq1  TAGG  454
      ||||
seq2  TAGG  454