BAC Information

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BAC

Clone NameB6Ng01-276A16
Chromosome4 (Build37)
Map Location 49,259,681 - 49,327,855
singlet/doubletdoublet
Overlap geneE130309F12Rik
Upstream geneTxndc4, Invs, Tex10, 5730528L13Rik, Tmeff1, 2310039E09Rik
Downstream geneLOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2, LOC666663
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276A16.bB6Ng01-276A16.g
ACCGA076919GA076920
length8421,078
definitionB6Ng01-276A16.b B6Ng01-276A16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,327,313 - 49,327,855)(49,259,681 - 49,260,761)
sequence
gaattcaagagtgcagcaggcacgccaggcccataagtcattattctttc
ccactctccctaccttcaacttccctccagctcttacattctttctgtcc
cttcttctgtaatattcaatgagccttggagggatagtatagacgttcca
tttttggctgagcattcaacaattattagaagccctatgctcacttacgc
atctctgcagttaccaccgactactaaagaaaaaatagtctctgaccaaa
gatgacagcaccaccaatataaataataaacaaaactatttagaagataa
cttggctgatacaccatgttcatttagcaaaataaataaataaataaata
aataaataaacaaacaaataaacaaataaataacagcagtagttttccca
tggtagcctgtgatctcctcagccatggtattattctgaatgtcttcttg
cgcagcagacctcaatacaatcagaaagcagttgattaccccagagcagc
tatgtcactactgcaccagaaggaacatcttgcctagccagatggtagtg
tttcatgatggctttacagctggctaacattgctgatgatattttttttt
ctgaaaaaaaaaatgacatttaaacttatattgtgtacaacagtgggatg
cagcgtgatgtctccaggtgcacacagcatgcaccgtacaaactgaaggg
aactttcccacctctaactcctctcccaaagccccccgaacacggctcta
tttctaagtcaccattctttagtgtttatgagggggggaagaaaggagag
cgaggaaggaagaaggggtgaaaagagagtgggagagagaaa
gaattcttagcctcgattaaggtgtagatatgaacctagcatggtggtac
acacacctggaactctggcactcagaaagctgagacaggagtactttgag
ttcaaggtcaacctcagctatataatgagattctgtcttaaagaaataaa
tacaaagggaaaaaagtgaggttgatgaagacatcagttggacggaccct
cagtgtgctttcgggaacacacagatacatgcaccacactcacacaaaac
acacacttacacacacacaagcattgattcctttgtgttaccacattaaa
acaattactttagagaaaggtgcagctatcacccactctctttctagtgt
tctgactctgttgatctacttgtgagtagagtaggatttttttcccctct
tgttcctctaggaacaagagatgccagttcttctgactcatgactgaccg
tttttggatttctctcattctcttactttcagttttacaagtttaatatt
ctgcttccaaggttctatgtttgatcatcaaactgtgccatagttgaaat
gtaatctttaaagcattagacagaaaagggtagataaaaagatcatacac
aatgtaggtcagaaggacccagacctggaggaagatctaggtggagtcac
cagtaaataaacaaacctcttatgtagatccagttagtgacaggaagata
ctctgatttgtggaaagccagcttttatggcactgctttggttttttgtt
tgtttgtttgcttgcttgttttgttttgttttgtttttgaaataacttgt
tttccgaagcttcctctttgggcctagaagtatcgctgagaacccccagg
aaagcagcatgtctgtcccaggtgagctataacattcccagtagatgagt
gtcttgacctgcagtgagctcacagagcgtctaagcccctaaattcctgt
cttggtgcctttctttgagtgtatgagtatttctgacactccttttctta
agaaagaaactgagcactacaaattgttggtgatttgtccatagacctta
gtacacacacacactcttagaccacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_49327313_49327855
seq2: B6Ng01-276A16.b_345_888 (reverse)

seq1  TTTCTCTCTCCCACTCTCTTTTCACCCCTTCTTCCTTCCTCGCTCTCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCTCCCACTCTCTTTTCACCCCTTCTTCCTTCCTCGCTCTCCTT  50

seq1  TCTT-CCCCCCTCATAAACACTAAAGAATGGTGACTTAGAAATAGAGCCG  99
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCCCCCTCATAAACACTAAAGAATGGTGACTTAGAAATAGAGCCG  100

seq1  TGTTCGGGGGGCTTTGGGAGAGGAGTTAGAGGTGGGAAAGTTCCCTTCAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCGGGGGGCTTTGGGAGAGGAGTTAGAGGTGGGAAAGTTCCCTTCAG  150

seq1  TTTGTACGGTGCATGCTGTGTGCACCTGGAGACATCACGCTGCATCCCAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACGGTGCATGCTGTGTGCACCTGGAGACATCACGCTGCATCCCAC  200

seq1  TGTTGTACACAATATAAGTTTAAATGTCATTTTTTTTTTCAGAAAAAAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTACACAATATAAGTTTAAATGTCATTTTTTTTTTCAGAAAAAAAA  250

seq1  ATATCATCAGCAATGTTAGCCAGCTGTAAAGCCATCATGAAACACTACCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATCAGCAATGTTAGCCAGCTGTAAAGCCATCATGAAACACTACCA  300

seq1  TCTGGCTAGGCAAGATGTTCCTTCTGGTGCAGTAGTGACATAGCTGCTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTAGGCAAGATGTTCCTTCTGGTGCAGTAGTGACATAGCTGCTCT  350

seq1  GGGGTAATCAACTGCTTTCTGATTGTATTGAGGTCTGCTGCGCAAGAAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTAATCAACTGCTTTCTGATTGTATTGAGGTCTGCTGCGCAAGAAGA  400

seq1  CATTCAGAATAATACCATGGCTGAGGAGATCACAGGCTACCATGGGAAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGAATAATACCATGGCTGAGGAGATCACAGGCTACCATGGGAAAA  450

seq1  CTACTGCTGTTATTTATTTGTTTATTTGTTTGTTTATTTATTTATTTATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGCTGTTATTTATTTGTTTATTTGTTTGTTTATTTATTTATTTATT  500

seq1  TATTTATTTATTTTGCTAAATGAACATGGTGTATCAGCCAAGTT  543
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTATTTTGCTAAATGAACATGGTGTATCAGCCAAGTT  544

seq1: chr4_49259681_49260761
seq2: B6Ng01-276A16.g_66_1143

seq1  GAATTCTTAGCCTCGA-GAAGGTGTAGATATGAACCTAGCATGGTGGTAC  49
      ||||||||||||||||  ||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGCCTCGATTAAGGTGTAGATATGAACCTAGCATGGTGGTAC  50

seq1  ACACACCTGGAACTCTGGCACTCAGAAAGCTGAGACAGGAGTACTTTGAG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCTGGAACTCTGGCACTCAGAAAGCTGAGACAGGAGTACTTTGAG  100

seq1  TTCAAGGTCAACCTCAGCTATATAATGAGATTCTGTCTTAAAGAAATAAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGTCAACCTCAGCTATATAATGAGATTCTGTCTTAAAGAAATAAA  150

seq1  TACAAAGGGAAAAAAGTGAGGTTGATGAAGACATCAGTTGGACGGACCCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGGGAAAAAAGTGAGGTTGATGAAGACATCAGTTGGACGGACCCT  200

seq1  CAGTGTGCTTTCGGGAACACACAGATACATGCACCACACTCACACAAAAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGCTTTCGGGAACACACAGATACATGCACCACACTCACACAAAAC  250

seq1  ACACACTTACACACACACAAGCATTGATTCCTTTGTGTTACCACATTAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTTACACACACACAAGCATTGATTCCTTTGTGTTACCACATTAAA  300

seq1  ACAATTACTTTAGAGAAAGGTGCAGCTATCACCCACTCTCTTTCTAGTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTACTTTAGAGAAAGGTGCAGCTATCACCCACTCTCTTTCTAGTGT  350

seq1  TCTGACTCTGTTGATCTACTTGTGAGTAGAGTAGGATTTTTTTCCCCTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTCTGTTGATCTACTTGTGAGTAGAGTAGGATTTTTTTCCCCTCT  400

seq1  TGTTCCTCTAGGAACAAGAGATGCCAGTTCTTCTGACTCATGACTGACCG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTCTAGGAACAAGAGATGCCAGTTCTTCTGACTCATGACTGACCG  450

seq1  TTTTTGGATTTCTCTCATTCTCTTACTTTCAGTTTTACAAGTTTAATATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGATTTCTCTCATTCTCTTACTTTCAGTTTTACAAGTTTAATATT  500

seq1  CTGCTTCCAAGGTTCTATGTTTGATCATCAAACTGTGCCATAGTTGAAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCCAAGGTTCTATGTTTGATCATCAAACTGTGCCATAGTTGAAAT  550

seq1  GTAATCTTTAAAGCATTAGACAGAAAAGGGTAGATAAAAAGATCATACAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCTTTAAAGCATTAGACAGAAAAGGGTAGATAAAAAGATCATACAC  600

seq1  AATGTAGGTCAGAAGGACCCAGACCTGGAGGAAGATCTAGGTGGAGTCAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGGTCAGAAGGACCCAGACCTGGAGGAAGATCTAGGTGGAGTCAC  650

seq1  CAGTAAATAAACAAACCTCTTATGTAGATCCAGTTAGTGACAGGAAGATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAATAAACAAACCTCTTATGTAGATCCAGTTAGTGACAGGAAGATA  700

seq1  CTCTGATTTGTGGAAAGCCAGCTTTTATGGCACTGCTTTGGTTTTTTGTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATTTGTGGAAAGCCAGCTTTTATGGCACTGCTTTGGTTTTTTGTT  750

seq1  TGTTTGTTTGCTTGCTTGTTTTGTTTTGTTTTGTTTTTGAAATAACTTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGCTTGCTTGTTTTGTTTTGTTTTGTTTTTGAAATAACTTGT  800

seq1  TTTCCGAAGCTTCCTCTTTGGGCCTAGAAGTATCGCTGAGAACCCCCAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCGAAGCTTCCTCTTTGGGCCTAGAAGTATCGCTGAGAACCCCCAGG  850

seq1  -AAGCAGCATGTCTGTCCCAGGTGAGCTATAACATT-CCAGTAGATGAGT  897
       ||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAAGCAGCATGTCTGTCCCAGGTGAGCTATAACATTCCCAGTAGATGAGT  900

seq1  GTCTTGACCTGCAGTGAGCTCACAGAGCGTCTAAGCCCCTAAATTCCTGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTCTTGACCTGCAGTGAGCTCACAGAGCGTCTAAGCCCCTAAATTCCTG-  949

seq1  TCTTGGTG-CTTTCTTTGAGTTGTATGAGTATTCTTGACACTCCTTTTCT  996
      |||||||| ||||||||||| ||||||||||||  |||||||||||||||
seq2  TCTTGGTGCCTTTCTTTGAG-TGTATGAGTATTTCTGACACTCCTTTTCT  998

seq1  TAAAGAAAGAAACTGAGGCACTACAAAATGTTGGTGATTTGTCCATAGAC  1046
      | |||||||||||||| |||||||||| ||||||||||||||||||||||
seq2  T-AAGAAAGAAACTGA-GCACTACAAATTGTTGGTGATTTGTCCATAGAC  1046

seq1  CTAAGGTACACACACCACACTCTTAGACACACACA  1081
      || | ||||||||| ||||||||||||| ||||||
seq2  CTTA-GTACACACA-CACACTCTTAGAC-CACACA  1078