BAC Information

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BAC

Clone NameB6Ng01-276I15
Chromosome4 (Build37)
Map Location 147,135,897 - 147,137,050
singlet/doubletsinglet
Overlap geneLOC100041677
Upstream geneOTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652
Downstream geneLOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572, LOC100041733, LOC100041742
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276I15.bB6Ng01-276I15.g
ACCGA077297GA077298
length1,1561,179
definitionB6Ng01-276I15.b B6Ng01-276I15.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttcaagtgggtaagagaataattatacatgtgcaggatgtgaa
catcttatccagagatataaaaatctaaggaatgctcactctgaaataaa
ctgtaagcctggtggtaactcaatggccaatatgtgaagatacaccattc
aaacaaacaaacaaacaaacaaaaaatcagctcgtcaatgaaaggtcttt
catcctagctgtcagggatgtaacctaaaagccattctggtctctatata
aggacatgtgaaagttagaaatagagtgtgggaccctgttttacaaacaa
acaaacacacaaacaaacaaacaggaaacccatacaaaaaattagagctt
tgtcttctacattgatatcaaaatcaattttaaaagtacaaggatattag
aaggctgattctcctattggataatacttttatcttttaaagttgggtcc
tcagtgggtcacaatcgtttgaggaatttagctgttggaacattactgaa
ttaagtatgacactgggggttggctatgagaaaaaagaatagatagatcc
aagccatcttaattctttcttcctctttagtgactggggttgaagatgtg
atctttcacctttctacttcaacaacatggcaatgttctatctgtcctcc
ctgtcatggttgatggctatcctctggaagcattacccaaagtagtcttt
ttcttctattagtttccttgaacatggtgctttatgaaagcagcagacaa
aaaccaattacagtaaaacatattctgattggatttaaggttacctttca
gagagagaattcctgtcatattctgaaacctaatcaagaacaggaagtat
gttaggtcatgagaactatgaggccgttttaagaaatggtatcatctaaa
attatcatagtcataattgtgttgtcttctctcagtaaaaggtagatgag
ttaatggactcagactcacagcataatttagacattgtaatgtatatata
tgaggtctacatccaggaatatacgtttatgaacatttttttgataaaaa
gaaacaaatgccagtgttacatctagttacaagaaatagttaaagtgatg
gtgagtaaaccttgttgcttcccaaattcctacacctgtccaattttgcc
tcagat
gaattcatacaggagagaaaccttacaaatgcagtgagtgtgacaaatgc
tttacccaaccatcccatcttagtattcatcgtagaattcattcaggaga
gaaaccttacaaatgtagtgaatgcgacaaatgctttacccaaccatccc
ctcttagtattcatcgtagaattcattcaggagagaaaccttacaaatgt
agtgaatgcgacaaatgctttactgacaaaggcagtctcagagttcatca
gagaattcatataggagagaaaccgtacaaatgcagtgagtgtgacaaat
gctttacccaaccatcccatcttagtattcatcgtagaattcattcagga
gagaaaccttacaaatgtagtgaatgcgacaaatgctttactgacaaaag
cagtctgagagttcatcagagaattcatacaggagagaaaccgtaccaat
gcagtgagtgtgacaaatgctttactgacaaaggcagtcttagagttcat
catagaattcatgcaggagagaaaccttacaaatgtagtgaatgcgacaa
atgctttactgacaaaggctatctgagagttcatcatagaattcatgcag
gagagaaaccttacaaatgtagtgaatgtgacaaatgctttactcacaaa
ggctctctgagagttcatcatagaattcatgcaggagagaaaccttacaa
atgtagtgaatgtgacaaatgttttactgagaaaaacagtctgagaaggc
atcagagaattcatacaggagagaaaccttataaatgcagtgaatgtgac
aaatgctttacccgaaaatcacatcttagtattcatcagagaattcatac
aggagagaaactgtacaaatgcagtgaatgtgacaaatgctttacccaac
aatgccatcttagtattcatcagaaaatttcattcagagagaacccttac
aaatgcaatgaatgcgacaaatgctttagtgacaaacacagtctgagagg
catcagagaattcatacaggagagaccaccttacaaatgtaatgatgttg
acaaatgcttttactgaaaatcacatcttagtattcattcagataatcca
tacagggaaagaaaaccgtaccaatgtcaatggagtgacaatctttacct
gaaatgggcgtgttcttgaagaaatatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_147135897_147137050
seq2: B6Ng01-276I15.b_44_1199

seq1  GAATTCCTTCAAGTGGGTAAGAGAATAATTATACATGTGCAGGATGTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCAAGTGGGTAAGAGAATAATTATACATGTGCAGGATGTGAA  50

seq1  CATCTTATCCAGAGATATAAAAATCTAAGGAATGCTCACTCTGAAATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTATCCAGAGATATAAAAATCTAAGGAATGCTCACTCTGAAATAAA  100

seq1  TTCTGTAAGCCTGGTGGTAACTCAATGGCCAATATGTGAAGATACACCAT  150
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  --CTGTAAGCCTGGTGGTAACTCAATGGCCAATATGTGAAGATACACCAT  148

seq1  TCAAACAAACAAACAAACAAACAAACAAACAAAAAATCAGCTCGTCAAAG  200
      |        ||||||||||||||||||||||||||||||||||||||| |
seq2  T--------CAAACAAACAAACAAACAAACAAAAAATCAGCTCGTCAATG  190

seq1  AAAGGTCTTTCATCCTAGCTGTCAGGGATGTAACCTAAAAGCCATTCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTCTTTCATCCTAGCTGTCAGGGATGTAACCTAAAAGCCATTCTGG  240

seq1  TCTCTATATAAGGACATGTGAAAGTTAGAAATAGAGTGTGGGACCCTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATATAAGGACATGTGAAAGTTAGAAATAGAGTGTGGGACCCTGTT  290

seq1  TTACAAACAAACAAACACACAAACAAACAAACAGGAAACCCATACAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAACAAACAAACACACAAACAAACAAACAGGAAACCCATACAAAAA  340

seq1  ATTAGAGCTTTGTCTTCTACATTGATATCAAAATCAATTTTAAAAGTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAGCTTTGTCTTCTACATTGATATCAAAATCAATTTTAAAAGTACA  390

seq1  AGGATATTAGAAGGCTGATTCTCCTATTGGATAATACTTTTATCTTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATTAGAAGGCTGATTCTCCTATTGGATAATACTTTTATCTTTTAA  440

seq1  AGTTGGGTCCTCAGTGGGTCACAATCGTTTGAGGAATTTAGCTGTTGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGTCCTCAGTGGGTCACAATCGTTTGAGGAATTTAGCTGTTGGAA  490

seq1  CATTACTGAATAAAGTATGACACTGGGGGTTGGCTATGAGAAAAAAGAAT  550
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CATTACTGAATTAAGTATGACACTGGGGGTTGGCTATGAGAAAAAAGAAT  540

seq1  AGATAGATCCAAGCCATCTTAATTCTTTCTTCCTCTTTAGTGACTGGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGATCCAAGCCATCTTAATTCTTTCTTCCTCTTTAGTGACTGGGGT  590

seq1  TGAAGATGTGATCTTTCACCTTTCTACTTCAACAACATGGCAATGTTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATGTGATCTTTCACCTTTCTACTTCAACAACATGGCAATGTTCTA  640

seq1  TGTGTCCTCCCTGTCATGGTTGATGGCTATCCTCTGGAAGCATTACCCAA  700
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCTCCCTGTCATGGTTGATGGCTATCCTCTGGAAGCATTACCCAA  690

seq1  AGTAGTCTTTTTCTTCTATTAGTTTCCTTGAACATGGTGCTTTATGAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTCTTTTTCTTCTATTAGTTTCCTTGAACATGGTGCTTTATGAAAG  740

seq1  CAGCAGACAAAAACCAATTACAGTAAAACATATTCTGATTGGATTTAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGACAAAAACCAATTACAGTAAAACATATTCTGATTGGATTTAAGG  790

seq1  TTACCTTTCAGAGAGAGAATTCCTGTCATATTCTGAAACCTAATCAAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTTCAGAGAGAGAATTCCTGTCATATTCTGAAACCTAATCAAGAA  840

seq1  CAGGAAGTATGTTAGGTCATGAGAACTATGAGGCCATTTTAAGAAATGGT  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CAGGAAGTATGTTAGGTCATGAGAACTATGAGGCCGTTTTAAGAAATGGT  890

seq1  ATCATCTAAAATTATCATAGTCATAATTGTGTTGTCTTCTCTCAGTAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTAAAATTATCATAGTCATAATTGTGTTGTCTTCTCTCAGTAAAA  940

seq1  GGTAGATGAGTTAATGGACTCAGACTCACAGCATAATTTAGACATTGTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGATGAGTTAATGGACTCAGACTCACAGCATAATTTAGACATTGTAA  990

seq1  TGTATATATATGAGGTCTACATCCAGGAATACACGTTTATGAACA-TTTT  1049
      ||||||||||||||||||||||||||||||| ||||||||||||| ||||
seq2  TGTATATATATGAGGTCTACATCCAGGAATATACGTTTATGAACATTTTT  1040

seq1  TTGATAAAAAGAA--CAATGCCAGTGTTACATCTAGTT--TACAGATAG-  1094
      |||||||||||||   ||||||||||||||||||||||   | | |||| 
seq2  TTGATAAAAAGAAACAAATGCCAGTGTTACATCTAGTTACAAGAAATAGT  1090

seq1  TAAAGTGATGGTGAGTAAAACT--GTGCTT-CCAAATT-CTACAACTGTC  1140
      ||||||||||||||||||| ||   ||||| ||||||| ||||| |||||
seq2  TAAAGTGATGGTGAGTAAACCTTGTTGCTTCCCAAATTCCTACACCTGTC  1140

seq1  --ATTTTTGCTCAGAT  1154
        |||||  |||||||
seq2  CAATTTTGCCTCAGAT  1156