BAC Information

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BAC

Clone NameB6Ng01-276J08
Chromosome4 (Build37)9 (Build37)
Map Location 27,913,293 - 27,914,43772,674,996 - 72,675,061
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040691
Downstream geneTpm3-rs2, LOC100040842, LOC100040735, LOC230044, LOC665141, LOC100040773, Epha7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276J08.bB6Ng01-276J08.g
ACCGA077331GA077332
length1,140399
definitionB6Ng01-276J08.b B6Ng01-276J08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(27,913,293 - 27,914,437)(72,674,996 - 72,675,061)
sequence
gaattctttcagcagcagctaaaacttctaaatcttgggattcattccac
cagtaagaacagttctcctgaatgcatttctgaaaggaattgtggcagaa
gtaggaactattttagcttaacaattttcagtatctgaaataaattatta
ttctagagtaactgttagaacaagagaggaaattgggtatattccatagc
ttcatatttatttagtgcctgcttcctataacactttctttttgatttta
ttgatttaaatatgaattttaagcatgtggaagatcctataaaatataaa
gcaaatgcctcttacataattaagtgaaattataattctctcagtgttgg
tttattttgaaacttaatatccaacagagatcttcatactagagtgtagg
taaatacaaaatacaaggatgctacttgcctgatacttcattaccagaat
tgcttttctccaactgtataaattattatttgattgtgtaccttaaagta
tgaattactctaattcttcacatttattacagccagaaaaaacatgcaaa
gctttgtccaattaccacacaaatttaaatcaaattgatcaacggaattt
gtaaaagtaataactattatataataatttccttaaaaggtcaatttgaa
acaatcctatatattaaagtgaataatcatgtacatttagcaattatatt
aaaagaaatatgagcaaaattttatgtgttggattgcccctctttttatt
actgttaaaaattctcataattcattggattcaggaaaatgtctgcagtg
tttttaagacctgtgttctgagggatccacttttccagattcaggttcag
atgtctaccacactgaaaaactacaagatattttaataaggttctttttt
ctttttccctaatgtttactctcctttagcttgtttaggtcaatgccttt
ttttccaatgatacatatataatttctcatggtaaatatatcaagttgta
gctcatattataatatggtaaatatacatcattcaattttggggagagat
ttctactggatcaggaaacttattcatttaataatttaaataatatatac
aataatgatgataggtgaataaaatttttattccatcatt

tgtttacgcaatttcccactgtgccaatgagttcaaggcactttgtcttc
tattagattcaatgtatctggttttaggttgaggtccttgacacaattgg
acttgagctttgtgcaaggtgacatatataggttgattttcattttccta
catacaaaagccagttagacctgcaccatttattgaatatgctttctttt
tcccattgtatagttttggcttcttcaaagatcaagtgtccttaagtttg
tggttttatttctgggtcttcaagtctgttccattcgtcaatgtgtttgt
ctctgtaccaataccatgcagggtttttttttattttgtttttgtttttg
tttttgctttttgttttttgtttgtttggttgattggttggttgttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_27913293_27914437
seq2: B6Ng01-276J08.b_46_1185 (reverse)

seq1  AATGATGTGAAATAAAAATTTTAATCA-CTATCATCAATTAATTGTATAT  49
      |||||  || ||||||||||||| ||| |||||||||  | |||||||||
seq2  AATGA--TGGAATAAAAATTTTATTCACCTATCATCA--TTATTGTATAT  46

seq1  ATTATTTAAATTATTTAAATTGAATAAGTTTCCTGATCCAGTTAGAAATC  99
      |||||||||||||||  || ||||||||||||||||||||| ||||||||
seq2  ATTATTTAAATTATT--AAATGAATAAGTTTCCTGATCCAG-TAGAAATC  93

seq1  TCT-CCCAAAATTGAATGATGTATATTTA-CATATTTATAATATGAGCTA  147
      ||| ||||||||||||||||||||||||| |||| |||||||||||||||
seq2  TCTCCCCAAAATTGAATGATGTATATTTACCATA-TTATAATATGAGCTA  142

seq1  CAACTTTGATATATTTACCATGAGAAATTATATATGTATCATTGG-AAAA  196
      |||| |||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAAC-TTGATATATTTACCATGAGAAATTATATATGTATCATTGGAAAAA  191

seq1  AAGGCATTGACCTAAACAAGCTAAAGGAGAGTAAACATTTAGGGAAAAAG  246
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAGGCATTGACCTAAACAAGCTAAAGGAGAGTAAACA-TTAGGGAAAAAG  240

seq1  AAAAAAGAA-CTTATTAAAATATCTTGTAGTTTTTCAGTGTGGTAGACAT  295
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAACCTTATTAAAATATCTTGTAGTTTTTCAGTGTGGTAGACAT  290

seq1  CTGAACCTGAATCTGGAAAAGTGGATCCCTCAGAACACAGGTCTTAAAAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACCTGAATCTGGAAAAGTGGATCCCTCAGAACACAGGTCTTAAAAA  340

seq1  CACTGCAGACATTTTCCTGAATCCAATGAATTATGAGAATTTTTAACAGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCAGACATTTTCCTGAATCCAATGAATTATGAGAATTTTTAACAGT  390

seq1  AATAAAAAGAGGGGCAATCCAACACATAAAATTTTGCTCATATTTCTTTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAGAGGGGCAATCCAACACATAAAATTTTGCTCATATTTCTTTT  440

seq1  AATATAATTGCTAAATGTACATGATTATTCACTTTAATATATAGGATTGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAATTGCTAAATGTACATGATTATTCACTTTAATATATAGGATTGT  490

seq1  TTCAAATTGACCTTTTAAGGAAATTATTATATAATAGTTATTACTTTTAC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATTGACCTTTTAAGGAAATTATTATATAATAGTTATTACTTTTAC  540

seq1  AAATTCCGTTGATCAATTTGATTTAAATTTGTGTGGTAATTGGACAAAGC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCGTTGATCAATTTGATTTAAATTTGTGTGGTAATTGGACAAAGC  590

seq1  TTTGCATGTTTTTTCTGGCTGTAATAAATGTGAAGAATTAGAGTAATTCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATGTTTTTTCTGGCTGTAATAAATGTGAAGAATTAGAGTAATTCA  640

seq1  TACTTTAAGGTACACAATCAAATAATAATTTATACAGTTGGAGAAAAGCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTAAGGTACACAATCAAATAATAATTTATACAGTTGGAGAAAAGCA  690

seq1  ATTCTGGTAATGAAGTATCAGGCAAGTAGCATCCTTGTATTTTGTATTTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGTAATGAAGTATCAGGCAAGTAGCATCCTTGTATTTTGTATTTA  740

seq1  CCTACACTCTAGTATGAAGATCTCTGTTGGATATTAAGTTTCAAAATAAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACACTCTAGTATGAAGATCTCTGTTGGATATTAAGTTTCAAAATAAA  790

seq1  CCAACACTGAGAGAATTATAATTTCACTTAATTATGTAAGAGGCATTTGC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACTGAGAGAATTATAATTTCACTTAATTATGTAAGAGGCATTTGC  840

seq1  TTTATATTTTATAGGATCTTCCACATGCTTAAAATTCATATTTAAATCAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTTTATAGGATCTTCCACATGCTTAAAATTCATATTTAAATCAA  890

seq1  TAAAATCAAAAAGAAAGTGTTATAGGAAGCAGGCACTAAATAAATATGAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCAAAAAGAAAGTGTTATAGGAAGCAGGCACTAAATAAATATGAA  940

seq1  GCTATGGAATATACCCAATTTCCTCTCTTGTTCTAACAGTTACTCTAGAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGGAATATACCCAATTTCCTCTCTTGTTCTAACAGTTACTCTAGAA  990

seq1  TAATAATTTATTTCAGATACTGAAAATTGTTAAGCTAAAATAGTTCCTAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATTTATTTCAGATACTGAAAATTGTTAAGCTAAAATAGTTCCTAC  1040

seq1  TTCTGCCACAATTCCTTTCAGAAATGCATTCAGGAGAACTGTTCTTACTG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCACAATTCCTTTCAGAAATGCATTCAGGAGAACTGTTCTTACTG  1090

seq1  GTGGAATGAATCCCAAGATTTAGAAGTTTTAGCTGCTGCTGAAAGAATTC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAATGAATCCCAAGATTTAGAAGTTTTAGCTGCTGCTGAAAGAATTC  1140


seq1: chr9_72674996_72675061
seq2: B6Ng01-276J08.g_393_470 (reverse)

seq1  AAAACCAAACCAACCAACCAACCAAACAAACAA-----AAAAACCCCA--  43
      |||||  |||||||||| |||||||||||||||     ||||| |  |  
seq2  AAAAC--AACCAACCAATCAACCAAACAAACAAAAAACAAAAAGCAAAAA  48

seq1  -AAAAACAAAAAC------AAAAAAAACCC  66
       ||||||||||||      |||||||||||
seq2  CAAAAACAAAAACAAAATAAAAAAAAACCC  78


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