BAC Information

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BAC

Clone NameB6Ng01-277C20
Chromosome4 (Build37)
Map Location 19,479,219 - 19,627,563
singlet/doubletdoublet
Overlap geneCpne3, 2410005O16Rik, Wwp1
Upstream geneLOC667251, LOC435772, Cngb3, LOC623122, LOC100040306
Downstream geneSlc7a13, Atp6v0d2, LOC667282, Ttpa, LOC667301, EG664800, E130310K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277C20.bB6Ng01-277C20.g
ACCGA077764GA077765
length1,1081,112
definitionB6Ng01-277C20.b B6Ng01-277C20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,626,459 - 19,627,563)(19,479,219 - 19,480,342)
sequence
gaattcactgtagaccaggctggcctcaaactcagagacctgcctgcctt
tcctttgctagcgttgagaataaaggtatgcactacgacacctggtagac
ttaaaaaaaattaaaaatgtatctacttttttgtgtgaatgggtgttttg
cttgcatgaatgtgtgtataccatgtgtgcctggtgtccacagaaagcag
aagagaatgtcaggtcccctggaactgaggtacagaggactgtgagctac
catttgggtgctaggaactcaacctgggtcctctgtaagggcagccggta
ctcttactactgaaccatctctccaactccagtcagatcttatattgtaa
caacagacttttacaatgagggcagttcctggaaaaaccaaaggtatggt
tgaggttactgaaaatatccattgtggtggaaaacggagccctgctgcct
tgtaagctgaagtgaggagcccattgttactgtgtttcactgaggaaaag
gagatgacaatagaccatttctttttgtcctgtgacttgtgaaatatcca
gaatgcatggtacacattatatttggaaatttttttttttctgggttgaa
aaatttggtaacttgacattttacaatttctttgtaatctagatttttat
ttaaagtgtgacctaataaaagcccagaccttatagaaaggactacaaat
cgtgatttgagtcctggtactcattttactcgtgacagtgcatctgtaaa
cctgacttagggagttttatctaactgtgtctgttagctgttcatatgaa
agtgagaataatagcatccgatttatagaaatatatgctgacttaagcct
gacatttagcacgcactgggatgtttgtactatattttcattcactgatt
cagtctgtttcatcatttagtttcagaagataggctggtagatcattccg
agagcttagctgtgcaacaaggagacattgacttagatcccaagcaccct
ataagaaaggcctacccacctgttccgcattcttctaacctcagtgttag
gtgtgtggtggcgtggaggaagcagatggactctgctagcttctatgtct
actgccta

gaattcctacaattcactgttggcttttgttagcatggcagtttccatta
gtgatgacatgccagagtgaatagaacgcaatgttcaagatcaactgatc
agaaaaggctatagattatttgcttattagacttaagagactatttcttg
aagcaaaagatgttaattttaccgtaatactccctttccctgcaggtttg
ccatttttgagcaccagtggtcgagttagcttcttactggaaacaatctg
tcaaaagcggagagtaaaactttatcacttgctgaactgaatgcttaaaa
aacaaataaagaagttgaatataaagttcacttcaagtcattagagaggc
attaaaactgcatcccttaaagacttttaaaatgcatctccacagttaca
acccatttgaggtttcccaggccttccctctggcagatatgatctgtcgt
tgcattacctgaaacattagctccttcctcagaattgggaaaagtccagc
atttcatctcttacacagacgctgagctgaagcctgcctgccatgccttg
cctccatgatggactgcaacctcaaactgtgagccacaatcaatctttct
ctaggctgcttttgttaggcatttagtcccagcaatgagaaaaggtgagt
agcacaagaaaaacctatttatttcatgaaggatcttcaaagatcttgtc
acctccactccaaaaaggagccacatggtgaatggtgaatgatccaccct
gtctccaaccaggagctgcagactaaaccctgcccaaaggaaaatgaacc
cattctcccttaaggcctctgtcagatatttcatgagtgccttgagacac
tagctaacacagcacaatggtgactaagaggggcacagagcacccaagat
gcgggatggttactgctcactgctcagaccaggcaggtttacagtaggaa
agacaactggcaacaaggaaaattgtttaaaaaattacatcaggaaaaat
gaaaattcatgtagtggttatgtagagatttaaatataaataaatatatg
atcccatagatcatacattggacgccttggccataggagtggtgctactg
acaggattacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_19626459_19627563
seq2: B6Ng01-277C20.b_45_1152 (reverse)

seq1  TAGGCAGGTAGACATAG-AGCT-GCAGAGTCCTTCTGCCTCCTCCACGCC  48
      |||||| |||||||||| |||| ||||||||| ||||| |||||||||| 
seq2  TAGGCA-GTAGACATAGAAGCTAGCAGAGTCCATCTGCTTCCTCCACGC-  48

seq1  CACCCCACACACCTAACACTGAGGTTAGA--GATGCGG-ACAGGTGGGTA  95
        | |||||||||||||||||||||||||   |||||| |||||||||||
seq2  --CACCACACACCTAACACTGAGGTTAGAAGAATGCGGAACAGGTGGGTA  96

seq1  GGCCTTTC-TATAGGGTGCTTGGGATCTAAGTCAATGTCTCCTTGTTGCA  144
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTCTTATAGGGTGCTTGGGATCTAAGTCAATGTCTCCTTGTTGCA  146

seq1  CAGCTAAGCTCTCGGAATGATCTACCAGCCTATCTTCTGAAACTAAATGA  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAAGCTCTCGGAATGATCTACCAGCCTATCTTCTGAAACTAAATGA  196

seq1  TGAAACAGACTGAATCAGTGAATGAAAATATAGTACAAACAT-CCAGTGC  243
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGAAACAGACTGAATCAGTGAATGAAAATATAGTACAAACATCCCAGTGC  246

seq1  GTGCTAAATGTCAGGCTTAAGTCAGCATATATTTCTATAAATCGGATGCT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAAATGTCAGGCTTAAGTCAGCATATATTTCTATAAATCGGATGCT  296

seq1  ATTATTCTCACTTTCATATGAACAGCTAACAGACACAGTTAGATAAAACT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCTCACTTTCATATGAACAGCTAACAGACACAGTTAGATAAAACT  346

seq1  CCCTAAGTCAGGTTTACAGATGCACTGTCACGAGTAAAATGAGTACCAGG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAGTCAGGTTTACAGATGCACTGTCACGAGTAAAATGAGTACCAGG  396

seq1  ACTCAAATCACGATTTGTAGTCCTTTCTATAAGGTCTGGGCTTTTATTAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAATCACGATTTGTAGTCCTTTCTATAAGGTCTGGGCTTTTATTAG  446

seq1  GTCACACTTTAAATAAAAATCTAGATTACAAAGAAATTGTAAAATGTCAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACACTTTAAATAAAAATCTAGATTACAAAGAAATTGTAAAATGTCAA  496

seq1  GTTACCAAATTTTTCAACCCAGAAAAAAAAAAATTTCCAAATATAATGTG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCAAATTTTTCAACCCAGAAAAAAAAAAATTTCCAAATATAATGTG  546

seq1  TACCATGCATTCTGGATATTTCACAAGTCACAGGACAAAAAGAAATGGTC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGCATTCTGGATATTTCACAAGTCACAGGACAAAAAGAAATGGTC  596

seq1  TATTGTCATCTCCTTTTCCTCAGTGAAACACAGTAACAATGGGCTCCTCA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTCATCTCCTTTTCCTCAGTGAAACACAGTAACAATGGGCTCCTCA  646

seq1  CTTCAGCTTACAAGGCAGCAGGGCTCCGTTTTCCACCACAATGGATATTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCTTACAAGGCAGCAGGGCTCCGTTTTCCACCACAATGGATATTT  696

seq1  TCAGTAACCTCAACCATACCTTTGGTTTTTCCAGGAACTGCCCTCATTGT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAACCTCAACCATACCTTTGGTTTTTCCAGGAACTGCCCTCATTGT  746

seq1  AAAAGTCTGTTGTTACAATATAAGATCTGACTGGAGTTGGAGAGATGGTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCTGTTGTTACAATATAAGATCTGACTGGAGTTGGAGAGATGGTT  796

seq1  CAGTAGTAAGAGTACCGGCTGCCCTTACAGAGGACCCAGGTTGAGTTCCT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTAAGAGTACCGGCTGCCCTTACAGAGGACCCAGGTTGAGTTCCT  846

seq1  AGCACCCAAATGGTAGCTCACAGTCCTCTGTACCTCAGTTCCAGGGGACC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCAAATGGTAGCTCACAGTCCTCTGTACCTCAGTTCCAGGGGACC  896

seq1  TGACATTCTCTTCTGCTTTCTGTGGACACCAGGCACACATGGTATACACA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTCTCTTCTGCTTTCTGTGGACACCAGGCACACATGGTATACACA  946

seq1  CATTCATGCAAGCAAAACACCCATTCACACAAAAAAGTAGATACATTTTT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATGCAAGCAAAACACCCATTCACACAAAAAAGTAGATACATTTTT  996

seq1  AATTTTTTTTAAGTCTACCAGGTGTCGTAGTGCATACCTTTATTCTCAAC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTTTAAGTCTACCAGGTGTCGTAGTGCATACCTTTATTCTCAAC  1046

seq1  GCTAGCAAAGGAAAGGCAGGCAGGTCTCTGAGTTTGAGGCCAGCCTGGTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCAAAGGAAAGGCAGGCAGGTCTCTGAGTTTGAGGCCAGCCTGGTC  1096

seq1  TACAGTGAATTC  1105
      ||||||||||||
seq2  TACAGTGAATTC  1108


seq1: chr4_19479219_19480342
seq2: B6Ng01-277C20.g_66_1177

seq1  GAATTCCTACAATTCACTGTTGGCTTTTGTTAGCATGGCAGTTTCCATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACAATTCACTGTTGGCTTTTGTTAGCATGGCAGTTTCCATTA  50

seq1  GTGATGACATGCCAGAGTGAATAGAACGCAATGTTCAAGATCAACTGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGACATGCCAGAGTGAATAGAACGCAATGTTCAAGATCAACTGATC  100

seq1  AGAAAAGGCTATAGATTATTTGCTTATTAGACTTAAGAGACTATTTCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGCTATAGATTATTTGCTTATTAGACTTAAGAGACTATTTCTTG  150

seq1  AAGCAAAAGATGTTAATTTTACCGTAATACTCCCTTTCCCTGCAGGTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAAGATGTTAATTTTACCGTAATACTCCCTTTCCCTGCAGGTTTG  200

seq1  CCATTTTTGAGCACCAGTGGTCGAGTTAGCTTCTTACTGGAAACAATCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTTGAGCACCAGTGGTCGAGTTAGCTTCTTACTGGAAACAATCTG  250

seq1  TCAAAAGCGGAGAGTAAAACTTTATCACTTGCTGAACTGAATGCTTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGCGGAGAGTAAAACTTTATCACTTGCTGAACTGAATGCTTAAAA  300

seq1  AACAAATAAAGAAGTTGAATATAAAGTTCACTTCAAGTCATTAGAGAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATAAAGAAGTTGAATATAAAGTTCACTTCAAGTCATTAGAGAGGC  350

seq1  ATTAAAACTGCATCCCTTAAAGACTTTTAAAATGCATCTCCACAGTTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAACTGCATCCCTTAAAGACTTTTAAAATGCATCTCCACAGTTACA  400

seq1  ACCCATTTGAGGTTTCCCAGGCCTTCCCTCTGGCAGATATGATCTGTCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATTTGAGGTTTCCCAGGCCTTCCCTCTGGCAGATATGATCTGTCGT  450

seq1  TGCATTACCTGAAACATTAGCTCCTTCCTCAGAATTGGGAAAAGTCCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTACCTGAAACATTAGCTCCTTCCTCAGAATTGGGAAAAGTCCAGC  500

seq1  ATTTCATCTCTTACACAGACGCTGAGCTGAAGCCTGCCTGCCATGCCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATCTCTTACACAGACGCTGAGCTGAAGCCTGCCTGCCATGCCTTG  550

seq1  CCTCCATGATGGACTGCAACCTCAAACTGTGAGCCACAATCAATCTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATGATGGACTGCAACCTCAAACTGTGAGCCACAATCAATCTTTCT  600

seq1  CTAGGCTGCTTTTGTTAGGCATTTAGTCCCAGCAATGAGAAAAGGTGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCTGCTTTTGTTAGGCATTTAGTCCCAGCAATGAGAAAAGGTGAGT  650

seq1  AGCACAAGAAAAACCTATTTATTTCATGAAGGATCTTCAAAGATCTTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAAGAAAAACCTATTTATTTCATGAAGGATCTTCAAAGATCTTGTC  700

seq1  ACCTCCACTCCAAAAAGGAGCCACATGGTGAATGGTGAATGATCCACCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCACTCCAAAAAGGAGCCACATGGTGAATGGTGAATGATCCACCCT  750

seq1  GTCTCCAACCAGGAGCTGCAGACTAAACCCTGCCCAAAGGAAAATGAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCAACCAGGAGCTGCAGACTAAACCCTGCCCAAAGGAAAATGAACC  800

seq1  CATTCTCCCTTAAGGCCTCTGTCAGATATTTCATGAGTGCCTTGAGACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCCCTTAAGGCCTCTGTCAGATATTTCATGAGTGCCTTGAGACAC  850

seq1  TAGCTAACACAGCACAATGGTGACTAAGAGGGGCACAGAGCACCCAAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAACACAGCACAATGGTGACTAAGAGGGGCACAGAGCACCCAAGAT  900

seq1  GCGGGATGGTTACTGCTCACTGCTCAGACCAGGCAGGTTTACAGTAGGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGATGGTTACTGCTCACTGCTCAGACCAGGCAGGTTTACAGTAGGAA  950

seq1  AGAACAACTGGCAACAAGGAAAATTGTTTAAAAAATTACATCAAGGAAAA  1000
      || ||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AG-ACAACTGGCAACAAGGAAAATTGTTTAAAAAATTACATC-AGGAAAA  998

seq1  ATGAAAATTTCATGTTAGTGGTTATGTAGAGATTTAAATAATAAATTAAA  1050
      ||||||| |||||| |||||||||||||||||||||||| ||||| ||||
seq2  ATGAAAA-TTCATG-TAGTGGTTATGTAGAGATTTAAAT-ATAAA-TAAA  1044

seq1  TATATGATCCCCATAGGATCATACATTTGAACGCTTGGGCATTAGGGAGT  1100
      |||||||| |||||| ||||||||||| ||   ||||| |||   |||||
seq2  TATATGAT-CCCATA-GATCATACATTGGACGCCTTGGCCAT--AGGAGT  1090

seq1  GGTGCTACTTGACAAGGATTACAA  1124
      |||||||| |||| ||||||||||
seq2  GGTGCTAC-TGAC-AGGATTACAA  1112


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