BAC Information

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BAC

Clone NameB6Ng01-277L04
Chromosome4 (Build37)
Map Location 15,618,295 - 15,721,098
singlet/doubletdoublet
Overlap geneLOC100040095
Upstream gene1700034K16Rik, Otud6b, LOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1, Tmem64
Downstream geneLOC633695, Calb1, Decr1, Nbn, Osgin2, Ripk2, LOC667150, LOC383994
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277L04.bB6Ng01-277L04.g
ACCGA078147GA078148
length1,051557
definitionB6Ng01-277L04.b B6Ng01-277L04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,618,295 - 15,619,356)(15,720,536 - 15,721,098)
sequence
gaattcatacaaaggtcaaagtcaagattggacccttaactctgaccttc
atgtgcatgctgcagtatgtaccccatgcacaaaataataaataaacaaa
attttttttagaaaatatctgtgtattttaaaaccaattcttcaggataa
aaacataaaataattacttaagtcatttttatatttttattccatgtaag
ggcaaaatttgatgaataagaatagcaagctactaaaggattattccaat
ggtacccaagttttacaattcatattaaatgatatatacatgcaatgata
tgaattttaaagcttcatttgtacaaattttactgaaactaatgcctata
agtacaaatatttcaaactagtactatcaattttttgataaaataatttc
ttataccctttcccctacctcctctcattaatattctcaacaagaggtga
caattttgcatccatctattccagtatagatagcttacaaaatgttcatc
aacattactaaccattacagaggggcttattctggaccattttcaagccc
actaagtcccttcatcaccaccatccttctgctgaaccttcatttgctat
ttgggtcatctcgcctacttctaaggaattgtcattaacctcaatggaga
gacaaagatgtgtgaccagaagtctttgaggattcttcctgatgcttcac
tgtctgagtaagacactgacgtgtgtgtcttctcaagcccttttcagctc
cacttgtaagtcaagccacacacatccttattctcctcattaacatgctt
tcctggggatgctattactgccaacacaccttctgtgaaactgtaattat
tcaaatacttaatgaattggcatgtccatccacaaatcaatgttcaccat
tttgtcttgtctcatatttcatgcacttgcccctatacacaaactgtgta
aatacttaaagcaccatctaaagcataatttgccattgctatctttgtct
ctagtgagtatacccaattctgagttgatacaagactacaatcttagtta
g

cagtggcaacggaatagctgagcacttgagggagctgacaaaatcctaca
gaaagttgtgttgttgacatgggtgtggcgaagcttccccctgaagaagc
tcagagggaaggtgaagtcttccttggctgagtgtgcatgttggcagtgt
gcacacattagccactgctgcttcttcctcctgtgtgatttaccctgaga
ctgttcaccctcagagacccctacctaggatagcgaactcctttccctgt
gctggaaagaataagcccactgagcttctccgtttgtttaactgctgccc
ctccatcttggtgagcacaacacaccttcattttctcacggcctgaatca
ggtttcctggaccaagctatgttgaatgtgtcagtctgtgttgtgaatcc
tttccaagccaaccacccttgtgagtgtgtggcagttgctcactgatttt
atttcctcctcactggaaatgattataaggtgctcgcacatcctgaaaac
ccatctacttctgtgcgtgcttgtgtgtgtgtgtgtatgtgtgtgtgtgt
gtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_15618295_15619356
seq2: B6Ng01-277L04.b_42_1092

seq1  GAATTCATACAAAGGTCAAAGTCAAGATTGGACCCTTAACTCTGACCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACAAAGGTCAAAGTCAAGATTGGACCCTTAACTCTGACCTTC  50

seq1  ATGTGCATGCTGCAGTATGTACCCCATGCACAAAATAATAAATAAACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCATGCTGCAGTATGTACCCCATGCACAAAATAATAAATAAACAAA  100

seq1  ATTTTTTTTAGAAAATATCTGTGTATTTTAAAACCAATTCTTCAGGATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTAGAAAATATCTGTGTATTTTAAAACCAATTCTTCAGGATAA  150

seq1  AAACATAAAATAATTACTTAAGTCATTTTTATATTTTTATTCCATGTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAAAATAATTACTTAAGTCATTTTTATATTTTTATTCCATGTAAG  200

seq1  GGCAAAATTTGATGAATAAGAATAGCAAGCTACTAAAGGATTATTCCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAATTTGATGAATAAGAATAGCAAGCTACTAAAGGATTATTCCAAT  250

seq1  GGTACCCAAGTTTTACAATTCATATTAAATGATATATACATGCAATGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCCAAGTTTTACAATTCATATTAAATGATATATACATGCAATGATA  300

seq1  TGAATTTTAAAGCTTCATTTGTACAAATTTTACTGAAACTAATGCCTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTAAAGCTTCATTTGTACAAATTTTACTGAAACTAATGCCTATA  350

seq1  AGTACAAATATTTCAAACTAGTACTATCAATTTTTTGATAAAATAATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAAATATTTCAAACTAGTACTATCAATTTTTTGATAAAATAATTTC  400

seq1  TTATACCCTTTCCCCTACCTCCTCTCATTAATATTCTCAACAAGAGGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACCCTTTCCCCTACCTCCTCTCATTAATATTCTCAACAAGAGGTGA  450

seq1  CAATTTTGCATCCATCTATTCCAGTATAGATAGCTTACAAAATGTTCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTGCATCCATCTATTCCAGTATAGATAGCTTACAAAATGTTCATC  500

seq1  AACATTACTAACCATTACAGAGGGGCTTATTCTGGACCATTTTCAAGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTACTAACCATTACAGAGGGGCTTATTCTGGACCATTTTCAAGCCC  550

seq1  ACTAAGTCCCTTCATCACCACCATCCTTCTGCTGAACCTTCATTTGCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGTCCCTTCATCACCACCATCCTTCTGCTGAACCTTCATTTGCTAT  600

seq1  TTGGGTCATCTCGCCTACTTCTAAGGAATTGTCATTAACCTCAATGGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTCATCTCGCCTACTTCTAAGGAATTGTCATTAACCTCAATGGAGA  650

seq1  GACAAAGATGTGTGACCAGAAGTCTTTGAGGATTCTTCCTGATGCTTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGATGTGTGACCAGAAGTCTTTGAGGATTCTTCCTGATGCTTCAC  700

seq1  TGTCTGAGTAAGACACTGACGTGTGTGTCTTCTCAAGCCCTTTTCAGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAGTAAGACACTGACGTGTGTGTCTTCTCAAGCCCTTTTCAGCTC  750

seq1  CACTTGTAAGTCAAGCCACACACATCCTTATTCTCCTCATTAACATGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGTAAGTCAAGCCACACACATCCTTATTCTCCTCATTAACATGCTT  800

seq1  TCCTGGGGATGCTATTACTGCCAACACACCTTCTGTGAAACTGTAATTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGGATGCTATTACTGCCAACACACCTTCTGTGAAACTGTAATTAT  850

seq1  TCAAATACTTAATGAATTGGCATGTCCATCCACAAATCAATGTTCACCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATACTTAATGAATTGGCATGTCCATCCACAAATCAATGTTCACCAT  900

seq1  TTTGTCTTGTCTCATATTTCATGCACTTGCCCCTATACACAAACTGTGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTGTCTCATATTTCATGCACTTGCCCCTATACACAAACTGTGTA  950

seq1  AATACTTAAAGCACCATCTAAAGCATAATTTGCCCATTGCTATCTTTTGT  1000
      |||||||||||||||||||||||||||||||| ||||||||||| |||||
seq2  AATACTTAAAGCACCATCTAAAGCATAATTTG-CCATTGCTATC-TTTGT  998

seq1  CTTCTAGTGAGTATACCCAAATTCTGGAGTTGATACAAAAGAACAAACAA  1050
      | |||||||||||||||| |||||| |||||||||||| |  ||      
seq2  C-TCTAGTGAGTATACCC-AATTCT-GAGTTGATACAAGACTAC------  1039

seq1  AATCTTAGTTAG  1062
      ||||||||||||
seq2  AATCTTAGTTAG  1051


seq1: chr4_15720536_15721098
seq2: B6Ng01-277L04.g_65_627 (reverse)

seq1  CACACACACACACACACACATACACACACACACACAAGCACGCACAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACATACACACACACACACAAGCACGCACAGAAG  50

seq1  TAGATGGGTTTTCAGGATGTGCGAGCACCTTATAATCATTTCCAGTGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGGGTTTTCAGGATGTGCGAGCACCTTATAATCATTTCCAGTGAGG  100

seq1  AGGAAATAAAATCAGTGAGCAACTGCCACACACTCACAAGGGTGGTTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATAAAATCAGTGAGCAACTGCCACACACTCACAAGGGTGGTTGGC  150

seq1  TTGGAAAGGATTCACAACACAGACTGACACATTCAACATAGCTTGGTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAGGATTCACAACACAGACTGACACATTCAACATAGCTTGGTCCA  200

seq1  GGAAACCTGATTCAGGCCGTGAGAAAATGAAGGTGTGTTGTGCTCACCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCTGATTCAGGCCGTGAGAAAATGAAGGTGTGTTGTGCTCACCAA  250

seq1  GATGGAGGGGCAGCAGTTAAACAAACGGAGAAGCTCAGTGGGCTTATTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGGGGCAGCAGTTAAACAAACGGAGAAGCTCAGTGGGCTTATTCT  300

seq1  TTCCAGCACAGGGAAAGGAGTTCGCTATCCTAGGTAGGGGTCTCTGAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCACAGGGAAAGGAGTTCGCTATCCTAGGTAGGGGTCTCTGAGGG  350

seq1  TGAACAGTCTCAGGGTAAATCACACAGGAGGAAGAAGCAGCAGTGGCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGTCTCAGGGTAAATCACACAGGAGGAAGAAGCAGCAGTGGCTAA  400

seq1  TGTGTGCACACTGCCAACATGCACACTCAGCCAAGGAAGACTTCACCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCACACTGCCAACATGCACACTCAGCCAAGGAAGACTTCACCTTC  450

seq1  CCTCTGAGCTTCTTCAGGGGGAAGCTTCGCCACACCCATGTCAACAACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGAGCTTCTTCAGGGGGAAGCTTCGCCACACCCATGTCAACAACAC  500

seq1  AACTTTCTGTAGGATTTTGTCAGCTCCCTCAAGTGCTCAGCTATTCCGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCTGTAGGATTTTGTCAGCTCCCTCAAGTGCTCAGCTATTCCGTT  550

seq1  GCCACTGGAATTC  563
      |||||||||||||
seq2  GCCACTGGAATTC  563


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