BAC Information

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BAC

Clone NameB6Ng01-279D20
Chromosome4 (Build37)
Map Location 35,743,606 - 35,807,702
singlet/doubletdoublet
Overlap geneLingo2
Upstream geneZfp292, Cga, Mobkl2b, Ifnk, 3110043O21Rik, LOC620559, LOC621227
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279D20.bB6Ng01-279D20.g
ACCGA079270GA079271
length1,1621,143
definitionB6Ng01-279D20.b B6Ng01-279D20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,743,606 - 35,744,786)(35,806,551 - 35,807,702)
sequence
gaattcctctatattattgaaacctaacagaaaaaaaggcccagtagagt
ggcttttcagatcctgcatttatctccattctattctcccggaaagttag
gacaccctttattgcatcacctttatggcttctgccttcctagctgtctg
gcttgacaacttacatttgaaaccaacaagtgggtcttcatgttccataa
ttaatgtaccctcactgttctggtaagtggcaaatgagaatgtgagcatg
agtgctggagagtagacttgtataaagcagccagcttctgaaacttgcag
tcaaattctgcatctaagaggggaaattcagcagtgtctccttagctctg
aaaaatgagtcaggtctggggtgggttggtggctatagaatttggtagtg
tttctggcactgcaccagcttcaggcagctcccatttgttttactgccta
gcaccagaccagaatcattgtttattatggctcaaaggcagtaatcattt
catataatgtgaggatttttttcactcaattattctcacgctttgggctg
atgagaataataatcatgtgttgattactggtatcttgactgatgatagt
tacaaatgcaggtcactgctcattcctaactctttctttctgaaatactg
aaggtgatgatttcaaatctctttcaaacaacacttttccatcccaaagt
ttctgatgccaagaagacagtccaagataatttttcaggggtccccaact
cctgcagtctgcactgatttgttctaaagagacaaacatacataattcat
gtcttgtgcattgtggggtttgaccattgaaaatactatctcttttctgg
cagtgcttgcaggaactcgctacaataaacatttcatacctcagtggaca
ctctttttctcagctaatagaagcctgacttaaatgcagacttcatcatg
agaggagtgtatttatagtggattcagctagcaattttttccttccgaag
cataaatgagcttatatcagtatcaatagttggtttttcttcagaagagt
caagtgtgaagaggcatgaaaggaataaattgaacctctggtcttcatgt
tgagccatttcaactcaactctatatgcttgaactagccaaggaatggta
aggtcagtaaag

gaattctttatcattgtgtatatttgtattagcggtttttgtatgacaca
aacagttctgtttaaaaaaaaataccccatatattgccatcaaagagaat
cttgtttgagctacacatttttattcatagcttcgtttattcgtatgagt
cctctaaaattaaagggttcacattacctgttacaaaaaagaaaacacgc
aggattaaccacattggggaacacactggaggtcacacagctactatgag
gcagagctcacagttgctgactctgcatatatccaggactccatagaaag
atatatgggccttggtatctgaagggttgctacccactcatttgagcttt
tgaacactcttcttttttctttttccttttcatctttctctctcttttta
agtttaaattttacatttgtgcttaaggaaacatcagttgctgcatatca
ccatggaagccaaagacactttttatttcattttgagaatttgccattaa
aggtgatggcttccccataactgatgtgatagttacgtttgaaggaaacg
tgagtgtggaagaaactacagaaagcttagccagacctaagtttacctct
ccttccctctggggatatttggttttattggggagtattttcagttgtca
taaactgctggatctggtggcccaaagccaggaatgctgttaaatatccc
acaatgcacagatccatgaaagccctaatgtctgcagtgctgaagttgag
aagacctaccggatagccgtctactccactggacagggagagctaaacct
ggataacatggtgcattttatgttgtgccttgttgccatccgaccatact
gttcctttcccatttgagaagcccaaatgtctgggtctctcttctcagtc
ctatctcacccaagctagatgcacctatgctgagtacttttcttgatcaa
tgccacatttactagatttacatattctgaactaaatttcatcactagtt
atgtaatacatatttactaagtactgtctctatattgtcatgatctgcat
ctacttggatagatacggatagacctcacttaatgccatataactcgaag
ggataagatcataatggacggagaatattatcattgagtgctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_35743606_35744786
seq2: B6Ng01-279D20.b_47_1208

seq1  GAATTCCTCTATATTATTGAAACCTAACAGAAAAAAAGGCCCAGTAGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTATATTATTGAAACCTAACAGAAAAAAAGGCCCAGTAGAGT  50

seq1  GGCTTTTCAGATCCTGCATTTATCTCCATTCTATTCTCCCGGAAAGTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTCAGATCCTGCATTTATCTCCATTCTATTCTCCCGGAAAGTTAG  100

seq1  GACACCCTTTATTGCATCACCTTTATGGCTTCTGCCTTCCTAGCTGTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCCTTTATTGCATCACCTTTATGGCTTCTGCCTTCCTAGCTGTCTG  150

seq1  GCTTGACAACTTACATTTGAAACCAACAAGTGGGTCTTCATGTTCCATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGACAACTTACATTTGAAACCAACAAGTGGGTCTTCATGTTCCATAA  200

seq1  TTAATGTACCCTCACTGTTCTGGTAAGTGGCAAATGAGAATGTGAGCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTACCCTCACTGTTCTGGTAAGTGGCAAATGAGAATGTGAGCATG  250

seq1  AGTGCTGGAGAGTAGACTTGTATAAAGCAGCCAGCTTCTGAAACTTGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGGAGAGTAGACTTGTATAAAGCAGCCAGCTTCTGAAACTTGCAG  300

seq1  TCAAATTCTGCATCTAAGAGGGGAAATTCAGCAGTGTCTCCTTAGCTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTCTGCATCTAAGAGGGGAAATTCAGCAGTGTCTCCTTAGCTCTG  350

seq1  AAAAATGAGTCAGGTCTGGGGTGGGTTGGTGGCTATAGAATTTGGTAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGAGTCAGGTCTGGGGTGGGTTGGTGGCTATAGAATTTGGTAGTG  400

seq1  TTTCTGGCACTGCACCAGCTTCAGGCAGCTCCCATTTGTTTTACTGCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGCACTGCACCAGCTTCAGGCAGCTCCCATTTGTTTTACTGCCTA  450

seq1  GCACCAGACCAGAATCATTGTTTATTATGGCTCAAAGGCAGTAATCATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAGACCAGAATCATTGTTTATTATGGCTCAAAGGCAGTAATCATTT  500

seq1  CATATAATGTGAGGATTTTTTTCACTCAATTATTCTCACGCTTTGGGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAATGTGAGGATTTTTTTCACTCAATTATTCTCACGCTTTGGGCTG  550

seq1  ATGAGAATAATAATCATGTGTTGATTACTGGTATCTTGACTGATGATAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAATAATAATCATGTGTTGATTACTGGTATCTTGACTGATGATAGT  600

seq1  TACAAATGCAGGTCACTGCTCATTCCTAACTCTTTCTTTCTGAAATACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATGCAGGTCACTGCTCATTCCTAACTCTTTCTTTCTGAAATACTG  650

seq1  AAGGTGATGATTTCAAATCTCTTTCAAACAACACTTTTCCATCCCAAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGATGATTTCAAATCTCTTTCAAACAACACTTTTCCATCCCAAAGT  700

seq1  TTCTGATGCCAAGAAGACAGTCCAAGATAATTTTTCAGGGGTCCCCAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATGCCAAGAAGACAGTCCAAGATAATTTTTCAGGGGTCCCCAACT  750

seq1  CCTGCAGTCTGCACTGATTTGTTCTAAAGAGACAAACATACATAATTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGTCTGCACTGATTTGTTCTAAAGAGACAAACATACATAATTCAT  800

seq1  GTCTTGTGCATTGTGGGGTTTGACCATTGAAAATACTATCTCTTTTCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGTGCATTGTGGGGTTTGACCATTGAAAATACTATCTCTTTTCTGG  850

seq1  CAGTGCTTGCAGGAACTCGCTACAATAAACATTTCATACCTCAGTGGACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTTGCAGGAACTCGCTACAATAAACATTTCATACCTCAGTGGACA  900

seq1  CTC-TTTTCTCAGCTAATAGAAGCCTGACTTAAATGCAGACTTCATCATG  949
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTCTCAGCTAATAGAAGCCTGACTTAAATGCAGACTTCATCATG  950

seq1  AGAGGAGTGTATTTAATAGTGGATTCAGCTAAGCATTTTTTCCTTCCAAA  999
      |||||||||||||| ||||||||||||||||   ||||||||||||| ||
seq2  AGAGGAGTGTATTT-ATAGTGGATTCAGCTAGCAATTTTTTCCTTCCGAA  999

seq1  GCATAAAATGAGCTTATTATCAGTATCAATAGTTGGTTTTTC-TCAGAAG  1048
      |||| ||||||||||| ||||||||||||||||||||||||| |||||||
seq2  GCAT-AAATGAGCTTA-TATCAGTATCAATAGTTGGTTTTTCTTCAGAAG  1047

seq1  AGTCAAGGTGTGAAGAGGCATGAAAGGGAAATTAAATTGAAACTCTTGGT  1098
      |||||| ||||||||||||||||||||   | ||||||||| ||| ||||
seq2  AGTCAA-GTGTGAAGAGGCATGAAAGG---AATAAATTGAACCTC-TGGT  1092

seq1  GGTTTCATGGTTGGAGGCCATTTTCAAACTCAAACTCTAATAAATGCTTT  1148
         ||||| ||||   |||||||   ||||| |||||   || ||||  |
seq2  --CTTCAT-GTTG--AGCCATTT--CAACTC-AACTC---TATATGC--T  1129

seq1  TGAACTAGCCAGGGGAATGGTAAGGTCAG-AAAG  1181
      |||||||||||  |||||||||||||||| ||||
seq2  TGAACTAGCCA-AGGAATGGTAAGGTCAGTAAAG  1162


seq1: chr4_35806551_35807702
seq2: B6Ng01-279D20.g_64_1206 (reverse)

seq1  AAGCA-TCAATGATAATTATCTTTCTTGTTTCATTATTGATCTTTATCCC  49
      ||||| |||||||||||     ||||   | ||||| ||||| |||||||
seq2  AAGCACTCAATGATAAT----ATTCTCCGTCCATTA-TGATC-TTATCCC  44

seq1  TCGGAG-TATAT-GCATT-AGTGAGGTCCTATCTGTAATCTATCAAGTTA  96
      |  ||| ||||| ||||| |||||||| ||||| || ||||||| |  ||
seq2  TTCGAGTTATATGGCATTAAGTGAGGT-CTATCCGT-ATCTATCCAAGTA  92

seq1  GATGCAGATCATGAC-ATATAGGAGACAGTACTTAGTAAATTATGTATTA  145
      ||||||||||||||| ||||| |||||||||||||||||| |||||||||
seq2  GATGCAGATCATGACAATATA-GAGACAGTACTTAGTAAA-TATGTATTA  140

seq1  CATAAATTAGTGATGAAAATTTTAGTTCAG-ATATGTAAATTCTAGTAAA  194
      ||| || |||||||||||  |||||||||| ||||||||| |||||||||
seq2  CAT-AACTAGTGATGAAA--TTTAGTTCAGAATATGTAAA-TCTAGTAAA  186

seq1  TGTGGCATTGATCAAGAAAAGTTACTCAGCATAGGTGCATCTAGCTTGGG  244
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGTGGCATTGATCAAGAAAAG-TACTCAGCATAGGTGCATCTAGCTTGGG  235

seq1  TGAGATAGGACTGAGAAGAGAGACCCAGACCTTTGGGCTTCTCAAATGGG  294
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGAGATAGGACTGAGAAGAGAGACCCAGACATTTGGGCTTCTCAAATGGG  285

seq1  AAAGGAACAGTATGGTCGGATGGCAACAAGGCACAACATAAAATGCACCA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAACAGTATGGTCGGATGGCAACAAGGCACAACATAAAATGCACCA  335

seq1  TGTTATCCAGGTTTAGCTCTCCCTGTCCAGTGGAGTAGACGGCTATCCGG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCCAGGTTTAGCTCTCCCTGTCCAGTGGAGTAGACGGCTATCCGG  385

seq1  TAGGTCTTCTCAACTTCAGCACTGCAGACATTAGGGCTTTCATGGATCTG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCTTCTCAACTTCAGCACTGCAGACATTAGGGCTTTCATGGATCTG  435

seq1  TGCATTGTGGGATATTTAACAGCATTCCTGGCTTTGGGCCACCAGATCCA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGTGGGATATTTAACAGCATTCCTGGCTTTGGGCCACCAGATCCA  485

seq1  GCAGTTTATGACAACTGAAAATACTCCCCAATAAAACCAAATATCCCCAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTTATGACAACTGAAAATACTCCCCAATAAAACCAAATATCCCCAG  535

seq1  AGGGAAGGAGAGGTAAACTTAGGTCTGGCTAAGCTTTCTGTAGTTTCTTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGGAGAGGTAAACTTAGGTCTGGCTAAGCTTTCTGTAGTTTCTTC  585

seq1  CACACTCACGTTTCCTTCAAACGTAACTATCACATCAGTTATGGGGAAGC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCACGTTTCCTTCAAACGTAACTATCACATCAGTTATGGGGAAGC  635

seq1  CATCACCTTTAATGGCAAATTCTCAAAATGAAATAAAAAGTGTCTTTGGC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACCTTTAATGGCAAATTCTCAAAATGAAATAAAAAGTGTCTTTGGC  685

seq1  TTCCATGGTGATATGCAGCAACTGATGTTTCCTTAAGCACAAATGTAAAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGGTGATATGCAGCAACTGATGTTTCCTTAAGCACAAATGTAAAA  735

seq1  TTTAAACTTAAAAAGAGAGAGAAAGATGAAAAGGAAAAAGAAAAAAGAAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACTTAAAAAGAGAGAGAAAGATGAAAAGGAAAAAGAAAAAAGAAG  785

seq1  AGTGTTCAAAAGCTCAAATGAGTGGGTAGCAACCCTTCAGATACCAAGGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCAAAAGCTCAAATGAGTGGGTAGCAACCCTTCAGATACCAAGGC  835

seq1  CCATATATCTTTCTATGGAGTCCTGGATATATGCAGAGTCAGCAACTGTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATATCTTTCTATGGAGTCCTGGATATATGCAGAGTCAGCAACTGTG  885

seq1  AGCTCTGCCTCATAGTAGCTGTGTGACCTCCAGTGTGTTCCCCAATGTGG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGCCTCATAGTAGCTGTGTGACCTCCAGTGTGTTCCCCAATGTGG  935

seq1  TTAATCCTGCGTGTTTTCTTTTTTGTAACAGGTAATGTGAACCCTTTAAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCTGCGTGTTTTCTTTTTTGTAACAGGTAATGTGAACCCTTTAAT  985

seq1  TTTAGAGGACTCATACGAATAAACGAAGCTATGAATAAAAATGTGTAGCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGGACTCATACGAATAAACGAAGCTATGAATAAAAATGTGTAGCT  1035

seq1  CAAACAAGATTCTCTTTGATGGCAATATATGGGGTATTTTTTTTTAAACA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAGATTCTCTTTGATGGCAATATATGGGGTATTTTTTTTTAAACA  1085

seq1  GAACTGTTTGTGTCATACAAAAACCGCTAATACAAATATACACAATGATA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTTTGTGTCATACAAAAACCGCTAATACAAATATACACAATGATA  1135

seq1  AAGAATTC  1152
      ||||||||
seq2  AAGAATTC  1143


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