BAC Information

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BAC

Clone NameB6Ng01-279J12
Chromosome4 (Build37)
Map Location 146,553,756 - 146,652,786
singlet/doubletdoublet
Overlap geneOTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716
Upstream geneLOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570
Downstream geneLOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279J12.bB6Ng01-279J12.g
ACCGA079535GA079536
length1,1601,161
definitionB6Ng01-279J12.b B6Ng01-279J12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,651,633 - 146,652,786)(146,553,756 - 146,554,535)
sequence
gaattcttgcctctcccctttcaatctgagccataatcttctctatgtcc
tgaagctcattgcatctttcccagaacacagctgagtattcaatgacttc
ttctggagtttttccttctacttctctggctatattttcaatatcatcac
gaccccacttctcattagccttgataaactggttaaaatctctcttattc
caatttgtaaacccctgtgtcagaagcttctctttttcctctaactcctc
gtcattgagggtctctgcttcatcaatttttagctgttctttctatgcct
gtgctgcattaggtagatcaggactccaaggtaccttatacccaatagtt
ttcctgtaatacagaatttctttttccagtaattcacataaacctggagg
aaagaactggaaatcctgaacatttagttgttttggaggtcgaggtgcct
tgggtgctttaggctcactaacacggagagcttccctgaaatatgcatca
acagcatagttggcttttctttctctttttggtggttcaatccactctgt
gaatgcactcttttgtttttctctatagtcttctccttcaaagttataaa
cactggactctgtatccatcgtaaagtttctaagtgaactttcacccatc
ttggacagcttttcattcatttctgcagtcttctttgcacctctttctaa
aataccatcaatatcctcatcagtgatttcactttcttttgaagcaaaca
catgtgtggcaccacgtcgaatcatttgaagcatttcatctttcccaatt
ttgttcaggttctgatctacaagcctcccttgttgaattactatcgaatc
cagtctaagtttcatctcagcacgttccactattctttcttccacagtgt
tatcggttataaagcgaaacactcggacagtcttccttttgtccaattct
atgggcatagtccatagccctgagatcaacttgagggattcccaatctga
atcatataaaaattactacatcagcagttgcagattgatgcccagaccac
cagcacgtgtgctagcataaataacaaactttgtgctattgcttcaatgt
atgcaattgaatggagtcttgtcctcttcatggggtctctgttcatccaa
ctgccagtac
gaattcatcagagaaatcatacaggtgagaaaccttacaaatgtagtcga
tgtgacaaatcctttactgaaaatggccatctgagaattcatcagagaat
tcatacaggagagaaaccttacaaatgcagtgaatgtgacaaatgcttta
ctaaaaaattcagtttgaggattcatcagagaattcatacaggagagaaa
ccttacaaatgcagtgaatgtgacaaatgctttactttcaaaggcagtct
gaggattcatcagagaattcatacaggagagaaaccctacaaatgtagtg
aatgtgacaaatcctttactgaaaatggctgtttgagaattcatcagaga
attcatacaggagagaaaccttacaaatgcactgaatgtgacaaatgctt
tactttcaaaggcagtctgaggattcatcagagaattcatacaggagaga
aaccttacaaatgcactgaatgtgacaaatcctttactgaaaagggcaaa
ctgagaattcatcagagaattcataaaggagagaaaccttacaaatgtag
tgaatgtgacaaatgctttactgaaaaaggccatcagagaattcatacag
gagagatagcttacaaatagtttgtatgtgacaaatacaatacaatgtca
gtctgagaaatcatcagtttttaatacagtagagaatatttataaatgaa
gtgaatgagacaatcctttaccaagatatatcatcttaaaaatcattaga
gaatacttacagaagagaaacttttcaattatatcgaaggtatgaatcct
ttactcttggcctatttcctagaatgttaacagtgaatacttacaggata
caaacttaactcatgcattgtatgaagaaatatctttgacttcatttcag
gtcaaagagaatatctaataactttttaggcaaagtatttctgttgggga
aaagtgtggcctgtgttttattcacgttctattcttgaacaacaattgag
gctccaccactagagaatttagtatgattatgaaaatcatgtgaaaacct
tcaatgccaatgtcaatctaaataaatgtcaactattttttggcttggag
aaactctggaaatgtaaaactgtaaaagcttccatgaactcctttttact
tgtccaccctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146651633_146652786
seq2: B6Ng01-279J12.b_46_1205 (reverse)

seq1  GTACTGCAGGTTGGATGAACAGACACCCCATG-AGA-GACAAGACTCCA-  47
      ||||||   |||||||||||||| |||||||| ||| |||||||||||| 
seq2  GTACTGGCAGTTGGATGAACAGAGACCCCATGAAGAGGACAAGACTCCAT  50

seq1  TCAA-TGCATACAATGAACCAAATAGCACAAAGTTTG-TATTTATGCTAA  95
      |||| |||||||| |||| | |||||||||||||||| |||||||||| |
seq2  TCAATTGCATACATTGAAGC-AATAGCACAAAGTTTGTTATTTATGCT-A  98

seq1  GCACACGTGCTGGTGGTCTGGGCATCAATCTTGCAACTGCTGATGTAGTA  145
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GCACACGTGCTGGTGGTCTGGGCATCAATC-TGCAACTGCTGATGTAGTA  147

seq1  A-TTTTATATGATTCAGATT-GGAAT-CCTCAAGTTGATCTTCAGGCTAT  192
      | |||||||||||||||||| ||||| ||||||||||||||   ||||||
seq2  ATTTTTATATGATTCAGATTGGGAATCCCTCAAGTTGATCTCAGGGCTAT  197

seq1  GGACTATGCCCATAGAATTGGAC-AAAGGAAGACTGTCCGAGTGTTTCGC  241
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GGACTATGCCCATAGAATTGGACAAAAGGAAGACTGTCCGAGTGTTTCGC  247

seq1  TTTATAACCGATAACACTGTGGAAGAAAGAATAGTGGAACGTGCTGAGAT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAACCGATAACACTGTGGAAGAAAGAATAGTGGAACGTGCTGAGAT  297

seq1  GAAACTTAGACTGGATTCGATAGTAATTCAACAAGGGAGGCTTGTAGATC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTAGACTGGATTCGATAGTAATTCAACAAGGGAGGCTTGTAGATC  347

seq1  AGAACCTGAACAAAATTGGGAAAGATGAAATGCTTCAAATGATTCGACGT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCTGAACAAAATTGGGAAAGATGAAATGCTTCAAATGATTCGACGT  397

seq1  GGTGCCACACATGTGTTTGCTTCAAAAGAAAGTGAAATCACTGATGAGGA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCACACATGTGTTTGCTTCAAAAGAAAGTGAAATCACTGATGAGGA  447

seq1  TATTGATGGTATTTTAGAAAGAGGTGCAAAGAAGACTGCAGAAATGAATG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATGGTATTTTAGAAAGAGGTGCAAAGAAGACTGCAGAAATGAATG  497

seq1  AAAAGCTGTCCAAGATGGGTGAAAGTTCACTTAGAAACTTTACGATGGAT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTGTCCAAGATGGGTGAAAGTTCACTTAGAAACTTTACGATGGAT  547

seq1  ACAGAGTCCAGTGTTTATAACTTTGAAGGAGAAGACTATAGAGAAAAACA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTCCAGTGTTTATAACTTTGAAGGAGAAGACTATAGAGAAAAACA  597

seq1  AAAGAGTGCATTCACAGAGTGGATTGAACCACCAAAAAGAGAAAGAAAAG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTGCATTCACAGAGTGGATTGAACCACCAAAAAGAGAAAGAAAAG  647

seq1  CCAACTATGCTGTTGATGCATATTTCAGGGAAGCTCTCCGTGTTAGTGAG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTATGCTGTTGATGCATATTTCAGGGAAGCTCTCCGTGTTAGTGAG  697

seq1  CCTAAAGCACCCAAGGCACCTCGACCTCCAAAACAACTAAATGTTCAGGA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGCACCCAAGGCACCTCGACCTCCAAAACAACTAAATGTTCAGGA  747

seq1  TTTCCAGTTCTTTCCTCCAGGTTTATGTGAATTACTGGAAAAAGAAATTC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGTTCTTTCCTCCAGGTTTATGTGAATTACTGGAAAAAGAAATTC  797

seq1  TGTATTACAGGAAAACTATTGGGTATAAGGTACCTTGGAGTCCTGATCTA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTACAGGAAAACTATTGGGTATAAGGTACCTTGGAGTCCTGATCTA  847

seq1  CCTAATGCAGCACAGGCATAGAAAGAACAGCTAAAAATTGATGAAGCAGA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATGCAGCACAGGCATAGAAAGAACAGCTAAAAATTGATGAAGCAGA  897

seq1  GACCCTCAATGACGAGGAGTTAGAGGAAAAAGAGAAGCTTCTGACACAGG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTCAATGACGAGGAGTTAGAGGAAAAAGAGAAGCTTCTGACACAGG  947

seq1  GGTTTACAAATTGGAATAAGAGAGATTTTAACCAGTTTATCAAGGCTAAT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTACAAATTGGAATAAGAGAGATTTTAACCAGTTTATCAAGGCTAAT  997

seq1  GAGAAGTGGGGTCGTGATGATATTGAAAATATAGCCAGAGAAGTAGAAGG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTGGGGTCGTGATGATATTGAAAATATAGCCAGAGAAGTAGAAGG  1047

seq1  AAAAACTCCAGAAGAAGTCATTGAATACTCAGCTGTGTTCTGGGAAAGAT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTCCAGAAGAAGTCATTGAATACTCAGCTGTGTTCTGGGAAAGAT  1097

seq1  GCAATGAGCTTCAGGACATAGAGAAGATTATGGCTCAGATTGAAAGGGGA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGAGCTTCAGGACATAGAGAAGATTATGGCTCAGATTGAAAGGGGA  1147

seq1  GAGGCAAGAATTC  1154
      |||||||||||||
seq2  GAGGCAAGAATTC  1160

seq1: chr4_146553756_146554535
seq2: B6Ng01-279J12.g_441_1224

seq1  TGCACTGAATGTGACAAATGCTTTACTTTCAAAGGCAGTCTGAGGATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGAATGTGACAAATGCTTTACTTTCAAAGGCAGTCTGAGGATTCA  50

seq1  TCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCACTGAATGTGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCACTGAATGTGACA  100

seq1  AATCCTTTACTGAAAAGGGCAAACTGAGAATTCATCAGAGAATTCATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTTACTGAAAAGGGCAAACTGAGAATTCATCAGAGAATTCATAAA  150

seq1  GGAGAGAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTACTGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTACTGAAAA  200

seq1  AGGCCATCAGAGAATTCATACAGGAGAGATAGCTTACAAATAGTTTGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATCAGAGAATTCATACAGGAGAGATAGCTTACAAATAGTTTGTAT  250

seq1  GTGACAAATACAATACAATGTCAGTCTGAGAAATCATCAGTTTTTAATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAAATACAATACAATGTCAGTCTGAGAAATCATCAGTTTTTAATAC  300

seq1  AGTAGAGAATATTTATAAATGAAGTGAATGAGACAATCCTTTACCAAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAGAATATTTATAAATGAAGTGAATGAGACAATCCTTTACCAAGAT  350

seq1  ATATCATCTTAAAAATCATTAGAGAATACTTACAGAAGAGAAACTTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATCTTAAAAATCATTAGAGAATACTTACAGAAGAGAAACTTTTCA  400

seq1  ATTATATCGAAGGTATGAATCCTTTACTCTTGGCCTATTTCCTAGAATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATCGAAGGTATGAATCCTTTACTCTTGGCCTATTTCCTAGAATGT  450

seq1  TAACAGTGAATACTTACAGGATACAAACTTAACTCATGCATTGTATGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTGAATACTTACAGGATACAAACTTAACTCATGCATTGTATGAAG  500

seq1  AAATATCTTTGACTTCATTTCAGGTCAAAGAGAATATCTAATAACTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCTTTGACTTCATTTCAGGTCAAAGAGAATATCTAATAACTTTTT  550

seq1  AGGCAAAGTATTTCTGTTGGGG-AAAGTGTGGCCTGTGTTTTATTCACGT  599
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGGCAAAGTATTTCTGTTGGGGAAAAGTGTGGCCTGTGTTTTATTCACGT  600

seq1  TCTATTCTTG-ACAACAATTGAGGCTCCA-CACTAGAGAA-TTAGTATGA  646
      |||||||||| |||||||||||||||||| |||||||||| |||||||||
seq2  TCTATTCTTGAACAACAATTGAGGCTCCACCACTAGAGAATTTAGTATGA  650

seq1  TTATGAAAATCATGTGAAAACTTTC-ATG-CAATGTTCAAATCTTAAATA  694
      ||||||||||||||||||||| ||| ||| ||||||   ||||| ||  |
seq2  TTATGAAAATCATGTGAAAACCTTCAATGCCAATGT--CAATCTAAATAA  698

seq1  ATGTCAACTATTTTTT-GCTTGAAGAAACTCTGAAAATGTAAAAATGTAG  743
      |||||||||||||||| ||||| |||||||||| |||||||||| |||| 
seq2  ATGTCAACTATTTTTTGGCTTGGAGAAACTCTGGAAATGTAAAACTGTA-  747

seq1  AAAGCTTTTCATG-ACACCTTTTTACTTGTTCACCCTT  780
      ||||| || |||| || ||||||||||||| |||||||
seq2  AAAGC-TTCCATGAACTCCTTTTTACTTGTCCACCCTT  784