BAC Information

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BAC

Clone NameB6Ng01-279O04
Chromosome4 (Build37)
Map Location 83,770,706 - 83,923,007
singlet/doubletdoublet
Overlap geneBnc2
Upstream geneLOC667985, 1810054D07Rik, Snapc3, Psip1, LOC100040611, 4930473A06Rik, LOC668010
Downstream geneLOC100040660, LOC624465, LOC100040284, D530005L17Rik, LOC622811, LOC100040303, Sh3gl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279O04.bB6Ng01-279O04.g
ACCGA079751GA079752
length1,1461,184
definitionB6Ng01-279O04.b B6Ng01-279O04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,921,873 - 83,923,007)(83,770,706 - 83,771,884)
sequence
gaattccagataggttcaagaaaggatctcttaactatttgaagtcacta
atttgctaagacttttttttttaactataaacatgaaatacaggagagtg
aggaggaaaatttttttttaaagttaaacctaaattacgtacaccattta
cgttttgaaaatgctcatctttttacacagtatttgctgcaccaggaaca
gtttatttgctgttcttttccgattttaagtacatttagactgttccatt
gagacgaggagagaatttccattcttttaccctgtttcatgtttattctc
ctgctcttatttaatgtataagctgtctgctgcgaggtcctctgtggctg
acacactaacaggaacagccattgagaaaagagtgccggggtttgccttc
atcctgcgctctctctcgaagaacttattcataaaaattactacgttaat
ggaaagtccccctttcgctcctcccacctgcactcactcccagatcctga
ggatggaggggaatgcttgcttttctgatggtgtaattaggaatgaatgt
gcttatttggtgcttaatgaaagttgaatcaattttaaaatgccctcctt
tttctcccccctccccactccctgtgcgcctcccccctcccctcttgttt
tcctagacacagtgccaatataaacctgcatcgtaaactgttgaccaaag
aaactggatgacatgagtcctggactcatcgcagccctcccttagcaagg
acctccgggatgaatttttgatgaagatctatggtgcccagcaccctctg
gggctcgatggcagggaagatgcctcctctcccgcagggactgaagactc
ccacctgaaatgggtacgggagaggcatggcagaaggactacatgggtcc
ttgacctgagtaccaccttccagccttccagttccagcagcagtgttcca
tttcctccagagagtccgatgcaggcagcgatgaggggattctttctcga
cgaacatcgaatggcgcgagtgacagtgtgaatcacttcacaaaggccga
agtcccccacctcccgcagcctaggctgaagttcaggatctcttatgttt
cagcagtattgtctgggaagcattgcgtggaatctgtgcaacattt

gaattcaaagtatgttggggaatgaaagagaggttagcctttgcttttac
tctgagttcactgtgtgccagtaagcatttctgatgttgttgttgttgca
tgattccaaatattgggtttggaaacagaaagaagcaggtttcaggcggg
gctggtgctagtacagaatctgtcccgagcttcatcagctccgacctcac
ctgctgcacagagtctgtgaagccagaggcaggcaaactgcccatagcca
gttctgcttggtacttcacgctcaccaacagcactgccctcaaccgaaga
atccctgggaggagagggcccctacgttcataaagcaatggaacaccctt
ccaggcttctctcagagcagctctgctctcctgtgatattgcatgttctg
ttttttctcttgccaggcttgtttggcagtttctgacagtctagtcaagc
ggggggacaggagagaaaaccacattctcggctttggcaagtacttttga
ggagctggggagatggctcaggggttaaatgcacttggtgctcttacaga
ggacctgagctagcatcccagagcctgatcaagctgctcacaacagccta
gtactccagctccaggggatctgactccctgaactggcctctgcgtgaac
ctgcacccatgtgtgcataacactcaggcgtgcacacacacacacacaca
cacacacacacacacacacacacacacagagagagagagagagagagaga
gagagagacagacagacagacagacagacagagagagagacagagagaca
gacagagagacagacagacagacagacagacagagacagagagggacaga
gagaaagggagacagagacatgtttaatatatttgagaaataaacaatag
tatcttttaaaaaagaaaaatgctcttgataaaaccatccagaggcagaa
gtttgacaacaacagtatagtttacatatgtttttttaggacttcctttg
tgtcagaagcttgctccctctttctgtacaacactctctcagatctcccc
tctgctcagaactcaatcaatgtcatcttctctggaaacatggtgcgaga
gcctgtgccatgcttcggaatcaatatctgagtccaagaacgtctggatc
gcgtttaaactgaaacccgagagaacccttctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_83921873_83923007
seq2: B6Ng01-279O04.b_43_1188 (reverse)

seq1  AAATGTTGCACATGATCCCAC-CATTGC-TCCCAGACAA-ACTGCTG-AA  46
      |||||||||||| ||| |||| || ||| |||||||||| ||||||| ||
seq2  AAATGTTGCACA-GATTCCACGCAATGCTTCCCAGACAATACTGCTGAAA  49

seq1  CATAAGAGATCCTGAAACTTCAGCCCCGAGGCTGCCGGGGAGGGTGGGGG  96
      |||||||||||||| ||||||||  || |||||||  ||||||  |||| 
seq2  CATAAGAGATCCTG-AACTTCAG--CCTAGGCTGC--GGGAGGTGGGGGA  94

seq1  CCTCGGCC-TTGTGAGTGGATTCCCCACTGTCACTCGCGCCA-TCGATG-  143
      | |||||| ||||||   |||| | ||||||||||||||||| |||||| 
seq2  CTTCGGCCTTTGTGAAGTGATT-CACACTGTCACTCGCGCCATTCGATGT  143

seq1  TCGTCGAG-AAGAATCCCCTCATCGCTGCCTGCATCGGACTCTCTGGAGG  192
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCGAGAAAGAATCCCCTCATCGCTGCCTGCATCGGACTCTCTGGAGG  193

seq1  -AATGG-ACACTGCTGCTGG-ACTGG-AGGCTGG-AGGTGGTACTCAGGT  237
       ||||| ||||||||||||| ||||| ||||||| |||||||||||||||
seq2  AAATGGAACACTGCTGCTGGAACTGGAAGGCTGGAAGGTGGTACTCAGGT  243

seq1  CAAGGA-CCATGTAGTCC-TCTGCCATGCCTCTCCCGTACCCA-TTCAGG  284
      |||||| ||||||||||| |||||||||||||||||||||||| ||||||
seq2  CAAGGACCCATGTAGTCCTTCTGCCATGCCTCTCCCGTACCCATTTCAGG  293

seq1  TGGGAGTCTTCAGTCCCTGCGGGAGAGGAGGCATCTTCCCTGCCATCGAG  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTCTTCAGTCCCTGCGGGAGAGGAGGCATCTTCCCTGCCATCGAG  343

seq1  CCCCAGAGGGTGCTGGGCACCATAGATCTTCATCAAAAATTCATCCCGGA  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGAGGGTGCTGGGCACCATAGATCTTCATCAAAAATTCATCCCGGA  393

seq1  GGTCCTTGCTAAGGGAGGGCTGCGATGAGTCCAGG-CTCATGTCATCCAG  433
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGTCCTTGCTAAGGGAGGGCTGCGATGAGTCCAGGACTCATGTCATCCAG  443

seq1  -TTCTTTGGTCAACAGTTTACGATGCAGGTTTATATTGGCACTGTGTCTA  482
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGGTCAACAGTTTACGATGCAGGTTTATATTGGCACTGTGTCTA  493

seq1  GGAAAACAAGAGGGGAGGGGGGAGGCGCACAGGGAGTGGGGAGGGGGGAG  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACAAGAGGGGAGGGGGGAGGCGCACAGGGAGTGGGGAGGGGGGAG  543

seq1  AAAAAGGAGGGCATTTTAAAATTGATTCAACTTTCATTAAGCACCAAATA  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGAGGGCATTTTAAAATTGATTCAACTTTCATTAAGCACCAAATA  593

seq1  AGCACATTCATTCCTAATTACACCATCAGAAAAGCAAGCATTCCCCTCCA  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATTCATTCCTAATTACACCATCAGAAAAGCAAGCATTCCCCTCCA  643

seq1  TCCTCAGGATCTGGGAGTGAGTGCAGGTGGGAGGAGCGAAAGGGGGACTT  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGGATCTGGGAGTGAGTGCAGGTGGGAGGAGCGAAAGGGGGACTT  693

seq1  TCCATTAACGTAGTAATTTTTATGAATAAGTTCTTCGAGAGAGAGCGCAG  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTAACGTAGTAATTTTTATGAATAAGTTCTTCGAGAGAGAGCGCAG  743

seq1  GATGAAGGCAAACCCCGGCACTCTTTTCTCAATGGCTGTTCCTGTTAGTG  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGGCAAACCCCGGCACTCTTTTCTCAATGGCTGTTCCTGTTAGTG  793

seq1  TGTCAGCCACAGAGGACCTCGCAGCAGACAGCTTATACATTAAATAAGAG  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCCACAGAGGACCTCGCAGCAGACAGCTTATACATTAAATAAGAG  843

seq1  CAGGAGAATAAACATGAAACAGGGTAAAAGAATGGAAATTCTCTCCTCGT  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAATAAACATGAAACAGGGTAAAAGAATGGAAATTCTCTCCTCGT  893

seq1  CTCAATGGAACAGTCTAAATGTACTTAAAATCGGAAAAGAACAGCAAATA  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATGGAACAGTCTAAATGTACTTAAAATCGGAAAAGAACAGCAAATA  943

seq1  AACTGTTCCTGGTGCAGCAAATACTGTGTAAAAAGATGAGCATTTTCAAA  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTCCTGGTGCAGCAAATACTGTGTAAAAAGATGAGCATTTTCAAA  993

seq1  ACGTAAATGGTGTACGTAATTTAGGTTTAACTTTAAAAAAAAATTTTCCT  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAAATGGTGTACGTAATTTAGGTTTAACTTTAAAAAAAAATTTTCCT  1043

seq1  CCTCACTCTCCTGTATTTCATGTTTATAGTTAAAAAAAAAAGTCTTAGCA  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTCTCCTGTATTTCATGTTTATAGTTAAAAAAAAAAGTCTTAGCA  1093

seq1  AATTAGTGACTTCAAATAGTTAAGAGATCCTTTCTTGAACCTATCTGGAA  1132
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTGACTTCAAATAGTTAAGAGATCCTTTCTTGAACCTATCTGGAA  1143

seq1  TTC  1135
      |||
seq2  TTC  1146


seq1: chr4_83770706_83771884
seq2: B6Ng01-279O04.g_65_1247

seq1  GAATTCAAAGTATGTTGGGGAATGAAAGAGAGGTTAGCCTTTGCTTTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGTATGTTGGGGAATGAAAGAGAGGTTAGCCTTTGCTTTTAC  50

seq1  TCTGAGTTCACTGTGTGCCAGTAAGCATTTCTGATGTTGTTGTTGTTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTCACTGTGTGCCAGTAAGCATTTCTGATGTTGTTGTTGTTGCA  100

seq1  TGATTCCAAATATTGGGTTTGGAAACAGAAAGAAGCAGGTTTCAGGCGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCCAAATATTGGGTTTGGAAACAGAAAGAAGCAGGTTTCAGGCGGG  150

seq1  GCTGGTGCTAGTACAGAATCTGTCCCGAGCTTCATCAGCTCCGACCTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGCTAGTACAGAATCTGTCCCGAGCTTCATCAGCTCCGACCTCAC  200

seq1  CTGCTGCACAGAGTCTGTGAAGCCAGAGGCAGGCAAACTGCCCATAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCACAGAGTCTGTGAAGCCAGAGGCAGGCAAACTGCCCATAGCCA  250

seq1  GTTCTGCTTGGTACTTCACGCTCACCAACAGCACTGCCCTCAACCGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGCTTGGTACTTCACGCTCACCAACAGCACTGCCCTCAACCGAAGA  300

seq1  ATCCCTGGGAGGAGAGGGCCCCTACGTTCATAAAGCAATGGAACACCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGGGAGGAGAGGGCCCCTACGTTCATAAAGCAATGGAACACCCTT  350

seq1  CCAGGCTTCTCTCAGAGCAGCTCTGCTCTCCTGTGATATTGCATGTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTTCTCTCAGAGCAGCTCTGCTCTCCTGTGATATTGCATGTTCTG  400

seq1  TTTTTTCTCTTGCCAGGCTTGTTTGGCAGTTTCTGACAGTCTAGTCAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTCTTGCCAGGCTTGTTTGGCAGTTTCTGACAGTCTAGTCAAGC  450

seq1  GGGGGGACAGGAGAGAAAACCACATTCTCGGCTTTGGCAAGTACTTTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGACAGGAGAGAAAACCACATTCTCGGCTTTGGCAAGTACTTTTGA  500

seq1  GGAGCTGGGGAGATGGCTCAGGGGTTAAATGCACTTGGTGCTCTTACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGGGGAGATGGCTCAGGGGTTAAATGCACTTGGTGCTCTTACAGA  550

seq1  GGACCTGAGCTAGCATCCCAGAGCCTGATCAAGCTGCTCACAACAGCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTGAGCTAGCATCCCAGAGCCTGATCAAGCTGCTCACAACAGCCTA  600

seq1  GTACTCCAGCTCCAGGGGATCTGACTCCCTGAACTGGCCTCTGCGTGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCCAGCTCCAGGGGATCTGACTCCCTGAACTGGCCTCTGCGTGAAC  650

seq1  CTGCACCCATGTGTGCATAACACTCAGGCGTGCACACACACACACACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACCCATGTGTGCATAACACTCAGGCGTGCACACACACACACACACA  700

seq1  CACACACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGA  750

seq1  GAGAGAGACAGACAGACAGACAGACAGACAGAGAGAGAGACAGAGAGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGACAGACAGACAGACAGACAGACAGAGAGAGAGACAGAGAGACA  800

seq1  GACAGAGAGACAGACAGACAGACAGACAGACAGAGACAGAGAGGGACAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGAGACAGACAGACAGACAGACAGACAGAGACAGAGAGGGACAGA  850

seq1  GAGAAAGGGAGACAGAGACATGTTT-ATATATTTGAGAAATAAACAATAG  899
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GAGAAAGGGAGACAGAGACATGTTTAATATATTTGAGAAATAAACAATAG  900

seq1  TATCTTTTAAAAA--GAAAATGCTCTTGATAAAACCATCCAGAGGCAGAA  947
      |||||||||||||   ||||||||||||||||||||||||||||||||||
seq2  TATCTTTTAAAAAAGAAAAATGCTCTTGATAAAACCATCCAGAGGCAGAA  950

seq1  GTTTGACAAC-ACAGTATAGTTTACATATTGTTTTTTTA-GACTTCCTTT  995
      |||||||||| ||||||||||||||||| |||||||||| ||||||||||
seq2  GTTTGACAACAACAGTATAGTTTACATA-TGTTTTTTTAGGACTTCCTTT  999

seq1  GTGTCAGAAGCTTGCTTCCCTCTTTCTGTTACACACTCTCTCAGATCTCC  1045
      ||||||||||||||| |||||||||||||   ||||||||||||||||||
seq2  GTGTCAGAAGCTTGC-TCCCTCTTTCTGTACAACACTCTCTCAGATCTCC  1048

seq1  CCTCTTGCCTCAGACTTCAATTCCATGTCATCTTCTCTG--AACAT-GTG  1092
      |||||   ||||||  |||| || |||||||||||||||  ||||| |||
seq2  CCTCT--GCTCAGAACTCAA-TCAATGTCATCTTCTCTGGAAACATGGTG  1095

seq1  C-AGAG-CTGTG-CATGGTTTTCAGATCAATATCCTGAAGTCACAGACAG  1139
      | |||| ||||| |||| ||   | |||||||| ||| ||||  |||   
seq2  CGAGAGCCTGTGCCATGCTTCGGA-ATCAATAT-CTG-AGTCCAAGA---  1139

seq1  GCTCCTGAGTCGCTGTTATAACTGAAACCCGAGA-----CTTCTG  1179
       |  |||  |||| |||  |||||||||||||||     ||||||
seq2  ACGTCTGGATCGC-GTTTAAACTGAAACCCGAGAGAACCCTTCTG  1183


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