BAC Information

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BAC

Clone NameB6Ng01-281H06
Chromosome4 (Build37)
Map Location 18,815,790 - 18,914,941
singlet/doubletdoublet
Overlap geneLOC435772
Upstream geneMmp16, LOC667251
Downstream geneCngb3, LOC623122, Cpne3, LOC100040306, 2410005O16Rik, Wwp1, Slc7a13, Atp6v0d2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281H06.bB6Ng01-281H06.g
ACCGA080926GA080927
length1,1501,173
definitionB6Ng01-281H06.b B6Ng01-281H06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,815,790 - 18,816,932)(18,913,781 - 18,914,941)
sequence
gaattctgataaacattggacgtgtaaaatgcagacaagaaaagctatat
ccactaatccattaaatacacagaaactttccttttatctgtgagtcctg
gcagaattttcagaaaataaaatatctagccctgcaactcaacttggata
tatgcagagtttttatattgtacaagactcgcagtggactggttaataaa
aatcctcgtaacaactaaggaatgtacaatatttaagcttgtgtataaat
ttaggaggaaaagaatttccagcagaagcaagtagccttaaagtaactaa
ataacatgataatacatatatgtgaataaacacaaaagaaggaaaatcat
cattatttttaaaagaagttattcatattgaattatttaaacaaaaatca
aaacattaaataaaaatagcaaaagtattttaaaggaaaaataaaataaa
gatctttaaataaaatttactgaatgtatgcattatttgtagtaaaagta
atttaaattgaacttatatgcaatatgcagttagcacttaaaatgtataa
atgtggaaggaatagaaataagggtgttgaacagattagaaaatggatag
gcaataccaagtatggaaactccaggagcagttaaaaaggacatgagaac
atagtcagagaatgacagcgattgcaaagttaagcctttcaaatagagga
acacatgaagaacaagctgggtctgtgttcagtactcatgtgctgaagta
aggaaagatcctgttcttcctggtgcccctttaccaataattttaagcag
acatgttatgccttatgttccttggcatttctagttgtcatcagtcaatt
agtccaaattacttcacaatccattatacaagaaggtatccatgactcct
caaaaatcatgaaggcctttttcttgattaatgaacaaatgacattgaaa
ccctttgctattaatttgtgaaattgtaaagcttttgggtaccttttgca
tttgtaatagtttcatcaaattgatttactttttcatttttatagtattt
atatttgttctgtaaatatggcttattcattaaaaagcttatgtgagctg
gcgggtggttggcgccacgcttatcccagcactgggagctgccaggcaga


gaattcttagaaaaaaaaatcttctctatgtagttcgataaaagaggtgt
tccacaagctgtgttgtgtaatcaaagggaaagtctttttgtatttttgt
tctttcctcactgagcctgtgatatgctgaggtcatgctgctttcttagg
tgtcctatatcattaacttgcaactttaaacagacttattttctggccaa
actatattcttttaaatctctggtttgcttcctctctgaagtcttaaggt
aaacctgtctaaaagcagacagtaatacctatgcaaccatctaaaagctg
agctgacacttggccttttcttcaatgtgagtgcaaggttatggaattta
tctacatatttatctacataaatgtatatttctaatgatcaggatacacc
tcttactaggggtagggagctttatcttcttgcctttgtgttcagtggca
atggcttttcatctgcctcctatcccctgtcttttggaaactacagtatt
tcttgcctttccttgagtggcttgatttttttgctcatagtagagattgg
taaggcaactccaggcaaagcttcttgcatttcttcgagttattgttctt
tctcttttctaggcatatcaatgagggggacatttttcattcttctgtcc
acccttcattgcctctctgacagccttggtaaaatcagaagggaagagtt
gagaatgactctgagtgatttttcagtagaccttcctatgctgtgccaag
cttttttcagctgcccctgtaacctgagggttctcgtacatttgagctct
gctagactttctgaagactgtttagatctttccggtttattaaacagtga
taatttttccagcttttttgcttgtttagcagattgtgaatagtttgtaa
atagaataaaataaagtatgtgcaaaaattagctgagctcaaagtattag
ttataaattatagtgaaataaaatgtgatatactgaagccaggtttacag
ttattcttaattgctgatcttctgaaattactattctgtgagccatgtga
tatttataaacctggcttgtattaaatacccacacactgacatttaaatg
aatgctgttattgaattgtgaaagatcattcaagttatggactttatttt
actaaaactgcccaaaattattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_18815790_18816932
seq2: B6Ng01-281H06.b_44_1193

seq1  GAATTCTGATAAACATTGGACGTGTAAAATGCAGACAAGAAAAGCTATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATAAACATTGGACGTGTAAAATGCAGACAAGAAAAGCTATAT  50

seq1  CCACTAATCCATTAAATACACAGAAACTTTCCTTTTATCTGTGAGTCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAATCCATTAAATACACAGAAACTTTCCTTTTATCTGTGAGTCCTG  100

seq1  GCAGAATTTTCAGAAAATAAAATATCTAGCCCTGCAACTCAACTTGGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATTTTCAGAAAATAAAATATCTAGCCCTGCAACTCAACTTGGATA  150

seq1  TATGCAGAGTTTTTATATTGTACAAGACTCGCAGTGGACTGGTTAATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGAGTTTTTATATTGTACAAGACTCGCAGTGGACTGGTTAATAAA  200

seq1  AATCCTCGTAACAACTAAGGAATGTACAATATTTAAGCTTGTGTATAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCGTAACAACTAAGGAATGTACAATATTTAAGCTTGTGTATAAAT  250

seq1  TTAGGAGGAAAAGAATTTCCAGCAGAAGCAAGTAGCCTTAAAGTAACTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGGAAAAGAATTTCCAGCAGAAGCAAGTAGCCTTAAAGTAACTAA  300

seq1  ATAACATGATAATACATATATGTGAATAAACACAAAAGAAGGAAAATCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATGATAATACATATATGTGAATAAACACAAAAGAAGGAAAATCAT  350

seq1  CATTATTTTTAAAAGAAGTTATTCATATTGAATTATTTAAACAAAAATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTTTTAAAAGAAGTTATTCATATTGAATTATTTAAACAAAAATCA  400

seq1  AAACATTAAATAAAAATAGCAAAAGTATTTTAAAGGAAAAATAAAATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTAAATAAAAATAGCAAAAGTATTTTAAAGGAAAAATAAAATAAA  450

seq1  GATCTTTAAATAAAATTTACTGAATGTATGCATTATTTGTAGTAAAAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTAAATAAAATTTACTGAATGTATGCATTATTTGTAGTAAAAGTA  500

seq1  ATTTAAATTGAACTTATATGCAATATGCAGTTAGCACTTAAAATGTATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATTGAACTTATATGCAATATGCAGTTAGCACTTAAAATGTATAA  550

seq1  ATGTGGAAGGAATAGAAATAAGGGTGTTGAACAGATTAGAAAATGGATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGAAGGAATAGAAATAAGGGTGTTGAACAGATTAGAAAATGGATAG  600

seq1  GCAATACCAAGTATGGAAACTCCAGGAGCAGTTAAAAAGGACATGAGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATACCAAGTATGGAAACTCCAGGAGCAGTTAAAAAGGACATGAGAAC  650

seq1  ATAGTCAGAGAATGACAGCGATTGCAAAGTTAAGCCTTTCAAATAGAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCAGAGAATGACAGCGATTGCAAAGTTAAGCCTTTCAAATAGAGGA  700

seq1  ACACATGAAGAACAAGCTGGGTCTGTGTTCAGTACTCATGTGCTGAAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGAAGAACAAGCTGGGTCTGTGTTCAGTACTCATGTGCTGAAGTA  750

seq1  AGGAAAGATCCTGTTCTTCCTGGTGCCCCTTTACCAATAATTTTAAGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGATCCTGTTCTTCCTGGTGCCCCTTTACCAATAATTTTAAGCAG  800

seq1  ACATGTTATGCCTTATGTTCCTTGGCATTTCTAGTTGTCATCAGTCAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTATGCCTTATGTTCCTTGGCATTTCTAGTTGTCATCAGTCAATT  850

seq1  AGTCCAAATTACTTCACAATCCATTATACAAGAAGGTATCCATGACTCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAAATTACTTCACAATCCATTATACAAGAAGGTATCCATGACTCCT  900

seq1  CAAAAATCATGAAGGCCTTTTTCTTGATTAATGAACAAATGACATTGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATCATGAAGGCCTTTTTCTTGATTAATGAACAAATGACATTGAAA  950

seq1  CCC-TTGCTATTAA-TTGTGAAATTGTAAGGCTTTT-GGTACCTTTTGCA  997
      ||| |||||||||| |||||||||||||| |||||| |||||||||||||
seq2  CCCTTTGCTATTAATTTGTGAAATTGTAAAGCTTTTGGGTACCTTTTGCA  1000

seq1  TTTGTAATAGTTTCATCAAATTGATTTTACTTTTTCATTTTTATAGTATT  1047
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTTGTAATAGTTTCATCAAATTGA-TTTACTTTTTCATTTTTATAGTATT  1049

seq1  TATAATTTGTTCTGTAAATATGGCT--ATCATTAAAAAGCTAAGGTGGAG  1095
      ||| |||||||||||||||||||||   ||||||||||||| | || |||
seq2  TAT-ATTTGTTCTGTAAATATGGCTTATTCATTAAAAAGCTTATGT-GAG  1097

seq1  CTGGGCGGTGG-TGGCG-CACGCCTTTAATCCCAGCACTGGG------GA  1137
      ||||  ||||| ||||| |||||   | ||||||||||||||       |
seq2  CTGGCGGGTGGTTGGCGCCACGC---TTATCCCAGCACTGGGAGCTGCCA  1144

seq1  GGCAGA  1143
      ||||||
seq2  GGCAGA  1150


seq1: chr4_18913781_18914941
seq2: B6Ng01-281H06.g_64_1236 (reverse)

seq1  CAATAATTT---GCATTTTTAGT-AAATATAGTCCCATAA-TTTAATGAA  45
      |||||||||   ||| ||||||| ||||| ||| |||||| || ||||| 
seq2  CAATAATTTTGGGCAGTTTTAGTAAAATAAAGT-CCATAACTTGAATGA-  48

seq1  TTCTTTCACATTTC-ATAACAGCATCATTTTAAATGTTCAGTGTTGTGGT  94
       ||||||||| ||| ||||||||||   |||||||| |||||||   |||
seq2  -TCTTTCACAATTCAATAACAGCATTCATTTAAATG-TCAGTGTGTGGGT  96

seq1  ATTTAATACAAACCA-GTTTATAATATTCACATTGCTCAACAG-ATAGT-  141
      ||||||||||| ||| ||||||||   |||||| |||| |||| ||||| 
seq2  ATTTAATACAAGCCAGGTTTATAAATATCACATGGCTC-ACAGAATAGTA  145

seq1  ATTTCAGAAGATCAGCATTTA--GATAACTGT-AACCTGGCTTCAGTATT  188
      ||||||||||||||||| |||   |||||||| ||||||||||||||| |
seq2  ATTTCAGAAGATCAGCAATTAAGAATAACTGTAAACCTGGCTTCAGTA-T  194

seq1  ATCACATTTTATTTCACTATAATTTAT-ACT-ATACTTTGAGCTCAGCT-  235
      ||||||||||||||||||||||||||| ||| ||||||||||||||||| 
seq2  ATCACATTTTATTTCACTATAATTTATAACTAATACTTTGAGCTCAGCTA  244

seq1  ATTTTTGCACATACTTTATTTTATTCTATTTACAACCTATTCACAATCTG  285
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATTTTTGCACATACTTTATTTTATTCTATTTACAAACTATTCACAATCTG  294

seq1  CTAAACAAGC-AAAAAGCTGGAAAAATTATCACTGTTTAAT-AACCGGAA  333
      |||||||||| |||||||||||||||||||||||||||||| ||||||||
seq2  CTAAACAAGCAAAAAAGCTGGAAAAATTATCACTGTTTAATAAACCGGAA  344

seq1  AGATCTAAACAGTCTTCAG-AAGTCTAGCAGAGCTCAAATGTACGAGAAC  382
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGATCTAAACAGTCTTCAGAAAGTCTAGCAGAGCTCAAATGTACGAGAAC  394

seq1  CCTCAGGTTACAGGGGCAGCTGAAAAAAGCTTGGCACAGCATAGGAAGGT  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGTTACAGGGGCAGCTGAAAAAAGCTTGGCACAGCATAGGAAGGT  444

seq1  CTACTGAAAAATCACTCAGAGTCATTCTCAACTCTTCCCTTCTGATTTTA  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGAAAAATCACTCAGAGTCATTCTCAACTCTTCCCTTCTGATTTTA  494

seq1  CCAAGGCTGTCAGAGAGGCAATGAAGGGTGGACAGAAGAATGAAAAATGT  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCTGTCAGAGAGGCAATGAAGGGTGGACAGAAGAATGAAAAATGT  544

seq1  CCCCCTCATTGATATGCCTAGAAAAGAGAAAGAACAATAACTCGAAGAAA  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCATTGATATGCCTAGAAAAGAGAAAGAACAATAACTCGAAGAAA  594

seq1  TGCAAGAAGCTTTGCCTGGAGTTGCCTTACCAATCTCTACTATGAGCAAA  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGAAGCTTTGCCTGGAGTTGCCTTACCAATCTCTACTATGAGCAAA  644

seq1  AAAATCAAGCCACTCAAGGAAAGGCAAGAAATACTGTAGTTTCCAAAAGA  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAAGCCACTCAAGGAAAGGCAAGAAATACTGTAGTTTCCAAAAGA  694

seq1  CAGGGGATAGGAGGCAGATGAAAAGCCATTGCCACTGAACACAAAGGCAA  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGATAGGAGGCAGATGAAAAGCCATTGCCACTGAACACAAAGGCAA  744

seq1  GAAGATAAAGCTCCCTACCCCTAGTAAGAGGTGTATCCTGATCATTAGAA  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATAAAGCTCCCTACCCCTAGTAAGAGGTGTATCCTGATCATTAGAA  794

seq1  ATATACATTTATGTAGATAAATATGTAGATAAATTCCATAACCTTGCACT  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACATTTATGTAGATAAATATGTAGATAAATTCCATAACCTTGCACT  844

seq1  CACATTGAAGAAAAGGCCAAGTGTCAGCTCAGCTTTTAGATGGTTGCATA  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGAAGAAAAGGCCAAGTGTCAGCTCAGCTTTTAGATGGTTGCATA  894

seq1  GGTATTACTGTCTGCTTTTAGACAGGTTTACCTTAAGACTTCAGAGAGGA  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTACTGTCTGCTTTTAGACAGGTTTACCTTAAGACTTCAGAGAGGA  944

seq1  AGCAAACCAGAGATTTAAAAGAATATAGTTTGGCCAGAAAATAAGTCTGT  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACCAGAGATTTAAAAGAATATAGTTTGGCCAGAAAATAAGTCTGT  994

seq1  TTAAAGTTGCAAGTTAATGATATAGGACACCTAAGAAAGCAGCATGACCT  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTTGCAAGTTAATGATATAGGACACCTAAGAAAGCAGCATGACCT  1044

seq1  CAGCATATCACAGGCTCAGTGAGGAAAGAACAAAAATACAAAAAGACTTT  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATATCACAGGCTCAGTGAGGAAAGAACAAAAATACAAAAAGACTTT  1094

seq1  CCCTTTGATTACACAACACAGCTTGTGGAACACCTCTTTTATCGAACTAC  1132
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGATTACACAACACAGCTTGTGGAACACCTCTTTTATCGAACTAC  1144

seq1  ATAGAGAAGATTTTTTTTTCTAAGAATTC  1161
      |||||||||||||||||||||||||||||
seq2  ATAGAGAAGATTTTTTTTTCTAAGAATTC  1173


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