BAC Information

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BAC

Clone NameB6Ng01-285A08
Chromosome4 (Build37)
Map Location 147,049,291 - 147,112,007
singlet/doubletdoublet
Overlap geneLOC100043100, LOC666640, LOC194189
Upstream geneMGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618
Downstream geneLOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572, LOC100041733
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285A08.bB6Ng01-285A08.g
ACCGA083577GA083578
length1,1611,071
definitionB6Ng01-285A08.b B6Ng01-285A08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,110,832 - 147,112,007)(147,049,291 - 147,050,015)
sequence
gaattcaagagatggataccaacacttaggtctgtttgcttgataggaga
tgaagagcaaagagctgtatttgtcagggatgttttattaccaggagagt
aggatgtatgtgtcacatcttatgaaatgcttattaaagagaaagtctgt
gttcaaaaaaattcagctggagatacttagttatagatgaagctcacagg
ataaaaaatgaaaaaatctaagttgtcagaaatagtgagagaattcaaga
ctacaaatcggctgttgctaacagggacgcctcttcagaacaacctgcat
gagctctggtcacttctaaactttttgttaccagatgtgtttaattcagc
tgatgactttgattcctggtttgatacaaataattgccttggggatcaaa
agctagttgagaggcttcatatggttttgtgtccattcctccttcgtcga
attaaagctgatgttgaaaagagtttgcctccaaaaaaagaagtaaaaat
ctatgtgagtcttagcaaaatgcaaagacaatggtatactcggatattaa
taaagatatagacatgttaaactcagcaggaaagatggacaaaatgaggc
tattgaacattttgatgcagttgaggaaatgctgcaatcatccgtaactc
ttcgatggagctgaacctggtccactgtacacaacagatacgcatctagt
taccaacagtggcaagatggtggtgttagacaagctactccctaaactga
aagaacaaggttcaagagtactaatctttagtcagatgacaagagtatta
gacattttggaagattattgcatgtggagaaattatgagtactgcaggtt
ggatgaacagacaccccatgagagacaagactccatcaatgcatacaatg
aaccaaatagcacaaagtttgtatttatgctaagcacacgtgctggtggt
ctgggcatcaatcttgcaactgctgatgtagtaattttatatgattcaga
ttggaatcctcagttgatctcagctatggactatgcccatagatgacaag
gagactgtcgagtgtttcgctttatacgatacactggtggagaaagaata
gtgcaccgtgcctgagaatggatcttagactggattcgataggtaatcaa
cagggaggctt
gaattctctgatgaattctcagactgcttttttcagtaaagcatttgcca
cattcagggcatttgtaaggtttctctcctgtatgaattctctgatgaat
agtaagattggattgttgggtaaagcatttgtcacattcactgcatttgt
aaggtttctctcctgtatgaattctctgatgaataccaagatggaatttt
cgggtaaagcatttgtcacattcactgcatttgtaagttttctctcctgt
atgaattctctgatgaattctcagactgcttttttcagtaaagcatttgc
cacattcactgcatttgtaaggtttctctcctgtatgaattctctgatga
atactaagacaggattgttgggtaaagcatttgtcacattcactgcattt
gtaaggtttctctcctgtatgaattctctgatgaatactaagattggatt
gtttggtaaagcatttgtcacattcactgcatttgtaaggtttctctcct
gtatgaattctctgatgaattctcagactgcttttttcagtaaagcattt
gccacattcactgcatttgtaaggtttctctcctgtatgaattctctgat
gcatagtaagattgaatttgtttttaaaacatttgtcacattcactacat
ttgtaaattatctcttctgtatgaattccctgatgaatactaagatggat
ctgatgggtaaagcatttgtcacttttactacttttgtaaggtttctttc
catgataaattctctgctgactttgtaggttttctctctgggtaagatat
ttgtgaaattcactacatttgtaagggttccctgcaatattgtctttttt
caccatgacttatgtttagaaacaaaaatattgttctaattctgcatttc
cggttgtgtttttttcttctgcatgttaattccttgattgagactaatgg
tagaaaaacaaactttaaactgtttacagagtcattgtatttgcaacttc
tttagtgttcctgggcttaagtcttttttggttcgagaatttgaggagca
tcagagctgtgatagttttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_147110832_147112007
seq2: B6Ng01-285A08.b_48_1208 (reverse)

seq1  AAGCCTCCCTTGTTGAATTACTATCGAATCCAGTCTAAGTTTCA-TCTCA  49
      ||||||||| |||||| |  ||||||||||||||||||| | || |||||
seq2  AAGCCTCCC-TGTTGATTACCTATCGAATCCAGTCTAAGATCCATTCTCA  49

seq1  -GCACGTTCCACTATTCTTTCTTCCACAGTGTTATCAGTTATAAAGCGAA  98
       ||||| | ||||||||||||| |  ||||| ||||   |||||||||||
seq2  GGCACGGTGCACTATTCTTTCTCCACCAGTG-TATC--GTATAAAGCGAA  96

seq1  ACACTCGGACAGTCTTCCTTTGTCCAATTCTATGGGCATGGTCCATAGGC  148
      |||||| ||||||||  | |||||    ||||||||||| ||||||| ||
seq2  ACACTC-GACAGTCT--CCTTGTC---ATCTATGGGCATAGTCCATA-GC  139

seq1  TGAAGATCAATTTGAGGATTCCAATCTGAATCATATAAAATTACTACATC  198
      || |||||||  ||||||||||||||||||||||||||||||||||||||
seq2  TG-AGATCAA-CTGAGGATTCCAATCTGAATCATATAAAATTACTACATC  187

seq1  AGCAGTTGCAAGATTGATGCCCAGACCACCAGCACGTGTGTTTAGCATAA  248
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGCAGTTGCAAGATTGATGCCCAGACCACCAGCACGTGTGCTTAGCATAA  237

seq1  ATACAAACTTTGTGCTATTTGGTTCATTGTATGCATTGATGGAGTCTTGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAACTTTGTGCTATTTGGTTCATTGTATGCATTGATGGAGTCTTGT  287

seq1  CTCTCATCATGGGGTGTCTGTTCATCCAACCTGCAGTACTCATAATTTCT  348
      |||   ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTC---TCATGGGGTGTCTGTTCATCCAACCTGCAGTACTCATAATTTCT  334

seq1  CCACATGCAATAATCTTCCAAAATGTCTAATACTCTTGTCATCTGACTAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGCAATAATCTTCCAAAATGTCTAATACTCTTGTCATCTGACTAA  384

seq1  AGATTAGTACTCTTGAACCTTGTTCTTTCAGTTTAGGGAGTAGCTTGTCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAGTACTCTTGAACCTTGTTCTTTCAGTTTAGGGAGTAGCTTGTCT  434

seq1  AACACCACCATCTTGCCACTGTTGGTAACAAGATGCGTATCTGTTGTGTA  498
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AACACCACCATCTTGCCACTGTTGGTAACTAGATGCGTATCTGTTGTGTA  484

seq1  CAGTGGACCAGGTTCAGCTCCATCGAAGAGATACGGATGATTGCAGCATT  548
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CAGTGGACCAGGTTCAGCTCCATCGAAGAGTTACGGATGATTGCAGCATT  534

seq1  TCCTCAACTGCATCAAAATGTTCAATAGCCTCATTTTGTCCATCTTCCCT  598
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCCTCAACTGCATCAAAATGTTCAATAGCCTCATTTTGTCCATCTTTCCT  584

seq1  GCTGAGTTTAATATGTCTATATCTTTTATTAATATCCGAGTATACCATTC  648
      ||||||||||| ||||||||||| ||||||||||||||||||||||||| 
seq2  GCTGAGTTTAACATGTCTATATC-TTTATTAATATCCGAGTATACCATTG  633

seq1  TCTTTGCATTTTGCTAAGACCCACATAGATTTTTACTTCTTTTTTTGGAG  698
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCTTTGCATTTTGCTAAGACTCACATAGATTTTTACTTCTTTTTTTGGAG  683

seq1  GCAAACTCTTTTCAACATCAGCTTTAATTCGACGAAAGAGGAATGGACAC  748
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GCAAACTCTTTTCAACATCAGCTTTAATTCGACGAAGGAGGAATGGACAC  733

seq1  AAAACCATATGAAGCCTCTCAACTAGCTTTTGATCCCCAAGGCAATTATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCATATGAAGCCTCTCAACTAGCTTTTGATCCCCAAGGCAATTATT  783

seq1  TGTATCAACCCAGGAATCAAAGTCATCAGCTGAATTAAACACATTTGGAA  848
      |||||||| ||||||||||||||||||||||||||||||||||| ||| |
seq2  TGTATCAAACCAGGAATCAAAGTCATCAGCTGAATTAAACACATCTGGTA  833

seq1  ACAAAAAGTTTAGAAGTGACCAGAGCTCATGCAGGTTGTTCTGAAGAGGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAGTTTAGAAGTGACCAGAGCTCATGCAGGTTGTTCTGAAGAGGC  883

seq1  GTCCCTGTTAGCAACAGCCGATTTGTAGTCTTGAATTCTCTCACTGTTTC  948
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTCCCTGTTAGCAACAGCCGATTTGTAGTCTTGAATTCTCTCACTATTTC  933

seq1  TGACAACTTAGATTTTTTCATTTTTTATCCTGTGAGCTTCATCTATAACT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACTTAGATTTTTTCATTTTTTATCCTGTGAGCTTCATCTATAACT  983

seq1  AAGTATCTCCAGTTGAATTTTTTTGAACACAGACTTTCTCTTTAATAAGC  1048
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAGTATCTCCAGCTGAATTTTTTTGAACACAGACTTTCTCTTTAATAAGC  1033

seq1  ATTTCATAAGATGTGACACACACATCCCACTCTCCTGGTAATAAAACATC  1098
      |||||||||||||||||||| |||||| ||||||||||||||||||||||
seq2  ATTTCATAAGATGTGACACATACATCCTACTCTCCTGGTAATAAAACATC  1083

seq1  CCTGACAAATACAGCTCTTTGCTCTTCATCTCCTATCAAGCAAACAGACC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACAAATACAGCTCTTTGCTCTTCATCTCCTATCAAGCAAACAGACC  1133

seq1  TAAGTGTTGGTATCCATCTCTTGAATTC  1176
      ||||||||||||||||||||||||||||
seq2  TAAGTGTTGGTATCCATCTCTTGAATTC  1161

seq1: chr4_147049291_147050015
seq2: B6Ng01-285A08.g_413_1140

seq1  CTGATGAATTCTCAGACTGCTTTTTTCAGTAAAGCATTTGCCACATTCAC  50
      ||||||||| || |||| |  || ||  |||||||||||| |||||||||
seq2  CTGATGAATACTAAGACAGGATTGTTGGGTAAAGCATTTGTCACATTCAC  50

seq1  TGCATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGAATTCTCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||| || |||
seq2  TGCATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGAATACTAAGA  100

seq1  CTGCTTTTTTCAGTAAAGCATTTGCCACATTCACTGCATTTGTAAGGTTT  150
       ||  || ||  |||||||||||| |||||||||||||||||||||||||
seq2  TTGGATTGTTTGGTAAAGCATTTGTCACATTCACTGCATTTGTAAGGTTT  150

seq1  CTCTCCTGTATGAATTCTCTGATGAATTCTCAGACTGGTTTTATCAGTAA  200
      ||||||||||||||||||||||||||||||||||||| |||| |||||||
seq2  CTCTCCTGTATGAATTCTCTGATGAATTCTCAGACTGCTTTTTTCAGTAA  200

seq1  AGCATTTGCCACATTCACTGCATTTGTAAGGTTTCTCTCCTTTATGAATT  250
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGCATTTGCCACATTCACTGCATTTGTAAGGTTTCTCTCCTGTATGAATT  250

seq1  CTCTGATGCATAGTAAGATTGAATTTGTTTTTAAAACATTTGTCACATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATGCATAGTAAGATTGAATTTGTTTTTAAAACATTTGTCACATTC  300

seq1  ACTACATTTGTAAATTTTCTCTTCTGTATGAATTCCCTGATGAATACTAA  350
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACTACATTTGTAAATTATCTCTTCTGTATGAATTCCCTGATGAATACTAA  350

seq1  GATGGATCTGATGGGTAAAGCATTTGTCACTTTTACTACTTTCGTAAGGT  400
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GATGGATCTGATGGGTAAAGCATTTGTCACTTTTACTACTTTTGTAAGGT  400

seq1  TTCTTTCCATGATAAATTCTCTGCTGACTTTGTAGTTTTTCTCTCTGGGT  450
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTCTTTCCATGATAAATTCTCTGCTGACTTTGTAGGTTTTCTCTCTGGGT  450

seq1  AAGATATTTGTGAAATTCACTACATTTGTAAGGGTTCCCTGCAATATTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTTGTGAAATTCACTACATTTGTAAGGGTTCCCTGCAATATTGT  500

seq1  CTTTTTTCACCATGACTTTATGTTTAGAAACAAAAATCTTG-TCTAATTC  549
      |||||||||||||||| |||||||||||||||||||| ||| ||||||||
seq2  CTTTTTTCACCATGAC-TTATGTTTAGAAACAAAAATATTGTTCTAATTC  549

seq1  TGCATTT-CGGTTGTG-TTTTTTCTTCTGCATGTTAATTCCTTGATTGAG  597
      ||||||| |||||||| |||||||||||||||||||||||||||||||||
seq2  TGCATTTCCGGTTGTGTTTTTTTCTTCTGCATGTTAATTCCTTGATTGAG  599

seq1  ACTAATGGTAG-AAAACAAAC-TTAAACTGTTTACAGAGTCATTGTATTT  645
      ||||||||||| ||||||||| ||||||||||||||||||||||||||||
seq2  ACTAATGGTAGAAAAACAAACTTTAAACTGTTTACAGAGTCATTGTATTT  649

seq1  GCAAACTTCTTTAGTGTTCCTGGGCTTAAGTCTTTTTTGGGTCGAGAA-T  694
      || ||||||||||||||||||||||||||||||||||||| ||||||| |
seq2  GC-AACTTCTTTAGTGTTCCTGGGCTTAAGTCTTTTTTGGTTCGAGAATT  698

seq1  TGAAGAGCATCAGAGCTGTGATTAGTTTTGT  725
      ||| ||||||||||||||||| |||||||||
seq2  TGAGGAGCATCAGAGCTGTGA-TAGTTTTGT  728