BAC Information

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BAC

Clone NameB6Ng01-285O18
Chromosome4 (Build37)
Map Location 107,403,553 - 107,546,635
singlet/doubletdoublet
Overlap geneLOC433743, 4933424M12Rik, 4930430J20Rik
Upstream geneBC026682, Acot11, Ssbp3, Mrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48, Glis1, Dmrtb1, LOC100039889
Downstream geneMagoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2, Echdc2, Zyg11a, Zyg11b, LOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728, Zcchc11, LOC100040110, Prpf38a, Orc1l, Cc2d1b, Zfyve9, LOC100040326, 3110021N24Rik, Btf3l4, Txndc12, Kti12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285O18.bB6Ng01-285O18.g
ACCGA084247GA084248
length1,1921,133
definitionB6Ng01-285O18.b B6Ng01-285O18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,545,449 - 107,546,635)(107,403,553 - 107,404,688)
sequence
gaattccttctgggactatggaattatgtttccaacagtggacttcacag
acagcaagtggcattctcccaccccacccccaaggctcaggaaatggaaa
gatgttacatatgaagaaaattctatacaaatacccagagttgttccttt
tatttataaagcagtgaaaccaatccgtgtgtggacacatgcccagtatg
ctataattatctcatggtatttccccgaaatataaatttggatgtagtca
cctttttggacttagtcttatccatatgaacatacggtggtaagaaacat
gtttattatttttaaatggtggaaaataaggggatgagaaatagatgtaa
ccaaacctattccaaattcttcgtcctcattcacgtgactcagagggtca
gtgcctgagccggtccttactgtaaacatgggaaccctagacatgcactc
acttggctctagagcagtggctttcaaccttcctgatgcttcagaagcat
taacactgtccctcttgttggactaacccccaaccataaaatccctttcc
tttctacctcataactgtgattgtcactgttatgaatcataatgtaaata
tctggtttgcgatgctcttaggcgacccacaaaggttgacaatggttgct
ctaaaggctcggccttcagttgcttcagaggaagcttactgaagttgacc
caagtcctcactaagctgggctttgaaagaaggactctgctatcttgagc
tcctgagggcttgtagcactgttcagtacactggccagaaagcctaggtg
ggcatcgtgagagccaaagaggaactggaaagcattttgctggctcagca
gggcctcaggagtagccagaggtgatctacctttcctaccgcatgcctgc
acaaactgtagcatctgttttctgagcaaagtttctgaagtgtctctgaa
aactagacacccctcttgtggactgtttaaaataactgttttatgtattt
gaacatagtcataagcgtgcctcttcttctacagatttttcttcttctca
cacagacacaccacacataacacagagttctgttgcagtgagccagcata
cccaaaaataaaatacttctccacccttcctctggttattttatagaggc
taacctacttcgaaatatgttataaaatatctaaatggggaa
gaattcataacgtcctgggctccaggaacctcagagtctgaattcaattt
gacatctatacagctgtgtgacttggggctgatcccttgatctctctgat
atttaatttccccattttttttaaagcaaaaaaagaaagagaggaagaaa
gttaaatgtttctgctctcccaggcagctcctctcagcagcaggcagccc
tgaaagaccagctctcctcacaggagacagcaaaggcttagcaaccgaat
tgaagcacagaaacctcacaaccgggaaagggagcctccgttcatgacca
ctgctactctctgtgcagctgcgcagtgccagccgataccacacatcata
tgggtggccaggcacggccaactgagcctggggagccacagatggaccag
gatggaagtgtctggaactgaggcattgaagggaaggatgcctggcagag
ggtagcctgcggaaggggtacaggcagaggttccccccagacaacgtcac
ttggatccaggctaaggattctgctccgaattctggccttccaaggggtg
gagaaaccctaagctcagtgtgcagagaaatgcccgagccagactgtctc
aatgcaacattgaggtcacccaaagaggcagttcagaggctcagggtgac
ctccccctgcagccttggggacaccggagcatgggtggctatagcaaatg
caacttcccaggaggcttgagcagcaaagatgtgtttcctcacagcgtct
ggggaggggcccgtttcccgccacccccaccccccaggcctctcctctgg
acttgtgggtggccatcttgcctgtgtttttgtacttccttctgtgtccc
aggctccttctcttataagaaaccagtctccctggacttaggcaacaaca
gtgcttacccacagtgacagaaagcttctgatggtgaagaccagcctgct
ttcatcttagactaagcatcttaccggaaagacaaactaagtttgttcct
attatgattaatcttgtttccaaggactgctatgcctacctatatcttac
ttacattggttctgttctggagtgtccagggatggaccatcagaaccctt
tgttaaaagctgtttataggctcattcttgtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_107545449_107546635
seq2: B6Ng01-285O18.b_46_1237 (reverse)

seq1  TTCCCCATTTAGATTATTTATTAACATATTTCGAAAGTAAGGTTAG-CTC  49
      ||||||||||||| |||||  |||||||||||| |||| ||||||| |||
seq2  TTCCCCATTTAGA-TATTTTATAACATATTTCG-AAGT-AGGTTAGCCTC  47

seq1  TATAAATAATTTAGAG--AGG--TGAG-AGTA-TTTATTTTT-GGTATGG  92
      ||||||  |   ||||  |||   ||| |||| ||||||||| ||||| |
seq2  TATAAAATAACCAGAGGAAGGGTGGAGAAGTATTTTATTTTTGGGTAT-G  96

seq1  CTGGCTCACTGC-ACAG-ACTCTGTGTTTATGTGT-GTGTGTCTGTGTGA  139
      |||||||||||| |||| |||||||| |||||||| ||||||||||||||
seq2  CTGGCTCACTGCAACAGAACTCTGTG-TTATGTGTGGTGTGTCTGTGTGA  145

seq1  G-AGAAGAAAAATCTGTAG-AGAAGAGGCACGCTTATGACTATTGTTCAA  187
      | ||||||||||||||||| |||||||||||||||||||||| |||||||
seq2  GAAGAAGAAAAATCTGTAGAAGAAGAGGCACGCTTATGACTA-TGTTCAA  194

seq1  ATACATAAAAACAGTTATTTTAAAACAGTCCACAAGAGGGGTGTCTAGTT  237
      |||||| |||||||||||||| ||||||||||||||||||||||||||||
seq2  ATACAT-AAAACAGTTATTTT-AAACAGTCCACAAGAGGGGTGTCTAGTT  242

seq1  TTCAGAGACACTTCAGAAACTTTGCTCAGAAAACAGATGCTACAGTTTGT  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGACACTTCAGAAACTTTGCTCAGAAAACAGATGCTACAGTTTGT  292

seq1  GCAGGCATGCGGTAGGAAAGGTAGATCACCTCTGGCTACTCCTGAGGCCC  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCATGCGGTAGGAAAGGTAGATCACCTCTGGCTACTCCTGAGGCCC  342

seq1  TGCTGAGCCAGCAAAATGCTTTCCAGTTCCTCTTTGGCTCTCACGATGCC  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGCCAGCAAAATGCTTTCCAGTTCCTCTTTGGCTCTCACGATGCC  392

seq1  CACCTAGGCTTTCTGGCCAGTGTACTGAACAGTGCTACAAGCCCTCAGGA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAGGCTTTCTGGCCAGTGTACTGAACAGTGCTACAAGCCCTCAGGA  442

seq1  GCTCAAGATAGCAGAGTCCTTCTTTCAAAGCCCAGCTTAGTGAGGACTTG  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAGATAGCAGAGTCCTTCTTTCAAAGCCCAGCTTAGTGAGGACTTG  492

seq1  GGTCAACTTCAGTAAGCTTCCTCTGAAGCAACTGAAGGCCGAGCCTTTAG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAACTTCAGTAAGCTTCCTCTGAAGCAACTGAAGGCCGAGCCTTTAG  542

seq1  AGCAACCATTGTCAACCTTTGTGGGTCGCCTAAGAGCATCGCAAACCAGA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCATTGTCAACCTTTGTGGGTCGCCTAAGAGCATCGCAAACCAGA  592

seq1  TATTTACATTATGATTCATAACAGTGACAATCACAGTTATGAGGTAGAAA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACATTATGATTCATAACAGTGACAATCACAGTTATGAGGTAGAAA  642

seq1  GGAAAGGGATTTTATGGTTGGGGGTTAGTCCAACAAGAGGGACAGTGTTA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGGATTTTATGGTTGGGGGTTAGTCCAACAAGAGGGACAGTGTTA  692

seq1  ATGCTTCTGAAGCATCAGGAAGGTTGAAAGCCACTGCTCTAGAGCCAAGT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCTGAAGCATCAGGAAGGTTGAAAGCCACTGCTCTAGAGCCAAGT  742

seq1  GAGTGCATGTCTAGGGTTCCCATGTTTACAGTAAGGACCGGCTCAGGCAC  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCATGTCTAGGGTTCCCATGTTTACAGTAAGGACCGGCTCAGGCAC  792

seq1  TGACCCTCTGAGTCACGTGAATGAGGACGAAGAATTTGGAATAGGTTTGG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTCTGAGTCACGTGAATGAGGACGAAGAATTTGGAATAGGTTTGG  842

seq1  TTACATCTATTTCTCATCCCCTTATTTTCCACCATTTAAAAATAATAAAC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCTATTTCTCATCCCCTTATTTTCCACCATTTAAAAATAATAAAC  892

seq1  ATGTTTCTTACCACCGTATGTTCATATGGATAAGACTAAGTCCAAAAAGG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCTTACCACCGTATGTTCATATGGATAAGACTAAGTCCAAAAAGG  942

seq1  TGACTACATCCAAATTTATATTTCGGGGAAATACCATGAGATAATTATAG  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTACATCCAAATTTATATTTCGGGGAAATACCATGAGATAATTATAG  992

seq1  CATACTGGGCATGTGTCCACACACGGATTGGTTTCACTGCTTTATAAATA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGGGCATGTGTCCACACACGGATTGGTTTCACTGCTTTATAAATA  1042

seq1  AAAGGAACAACTCTGGGTATTTGTATAGAATTTTCTTCATATGTAACATC  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAACAACTCTGGGTATTTGTATAGAATTTTCTTCATATGTAACATC  1092

seq1  TTTCCATTTCCTGAGCCTTGGGGGTGGGGTGGGAGAATGCCACTTGCTGT  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATTTCCTGAGCCTTGGGGGTGGGGTGGGAGAATGCCACTTGCTGT  1142

seq1  CTGTGAAGTCCACTGTTGGAAACATAATTCCATAGTCCCAGAAGGAATTC  1187
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAGTCCACTGTTGGAAACATAATTCCATAGTCCCAGAAGGAATTC  1192

seq1: chr4_107403553_107404688
seq2: B6Ng01-285O18.g_69_1201

seq1  GAATTCATAACGTCCTGGGCTCCAGGAACCTCAGAGTCTGAATTCAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAACGTCCTGGGCTCCAGGAACCTCAGAGTCTGAATTCAATTT  50

seq1  GACATCTATACAGCTGTGTGACTTGGGGCTGATCCCTTGATCTCTCTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCTATACAGCTGTGTGACTTGGGGCTGATCCCTTGATCTCTCTGAT  100

seq1  ATTTAATTTCCCCATTTTTTTTAAAGCAAAAAAAGAAAGAGAGGAAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTTCCCCATTTTTTTTAAAGCAAAAAAAGAAAGAGAGGAAGAAA  150

seq1  GTTAAATGTTTCTGCTCTCCCAGGCAGCTCCTCTCAGCAGCAGGCAGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATGTTTCTGCTCTCCCAGGCAGCTCCTCTCAGCAGCAGGCAGCCC  200

seq1  TGAAAGACCAGCTCTCCTCACAGGAGACAGCAAAGGCTTAGCAACCGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGACCAGCTCTCCTCACAGGAGACAGCAAAGGCTTAGCAACCGAAT  250

seq1  TGAAGCACAGAAACCTCACAACCGGGAAAGGGAGCCTCCGTTCATGACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCACAGAAACCTCACAACCGGGAAAGGGAGCCTCCGTTCATGACCA  300

seq1  CTGCTACTCTCTGTGCAGCTGCGCAGTGCCAGCCGATACCACACATCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTACTCTCTGTGCAGCTGCGCAGTGCCAGCCGATACCACACATCATA  350

seq1  TGGGTGGCCAGGCACGGCCAACTGAGCCTGGGGAGCCACAGATGGACCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGCCAGGCACGGCCAACTGAGCCTGGGGAGCCACAGATGGACCAG  400

seq1  GATGGAAGTGTCTGGAACTGAGGCATTGAAGGGAAGGATGCCTGGCAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAAGTGTCTGGAACTGAGGCATTGAAGGGAAGGATGCCTGGCAGAG  450

seq1  GGTAGCCTGCGGAAGGGGTACAGGCAGAGGTTCCCCCCAGACAACGTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCCTGCGGAAGGGGTACAGGCAGAGGTTCCCCCCAGACAACGTCAC  500

seq1  TTGGATCCAGGCTAAGGATTCTGCTCCGAATTCTGGCCTTCCAAGGGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATCCAGGCTAAGGATTCTGCTCCGAATTCTGGCCTTCCAAGGGGTG  550

seq1  GAGAAACCCTAAGCTCAGTGTGCAGAGAAATGCCCGAGCCAGACTGTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACCCTAAGCTCAGTGTGCAGAGAAATGCCCGAGCCAGACTGTCTC  600

seq1  AATGCAACATTGAGGTCACCCAAAGAGGCAGTTCAGAGGCTCAGGGTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAACATTGAGGTCACCCAAAGAGGCAGTTCAGAGGCTCAGGGTGAC  650

seq1  CTCCCCCTGCAGCCTTGGGGACACCGGAGCATGGGTGGCTATAGCAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCTGCAGCCTTGGGGACACCGGAGCATGGGTGGCTATAGCAAATG  700

seq1  CAACTTCCCAGGAGGCTTGAGCAGCAAAGATGTGTTTCCTCACAGCGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCCCAGGAGGCTTGAGCAGCAAAGATGTGTTTCCTCACAGCGTCT  750

seq1  GGGGAGGGGCCCGTTTCCCGCCACCCCCACCCCCCAGGCCTCTCCTCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGGGCCCGTTTCCCGCCACCCCCACCCCCCAGGCCTCTCCTCTGG  800

seq1  ACTTGTGGGTGGCCATCTTGCCTGTGTTTTTGTACTTCCTTCTGTGTCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGGGTGGCCATCTTGCCTGTGTTTTTGTACTTCCTTCTGTGTCCC  850

seq1  AGGCTCCTTCTCTTATAAGAAACCAGTCTCCCTGGACTTAGGCAACAACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCCTTCTCTTATAAGAAACCAGTCTCCCTGGACTTAGGCAACAACA  900

seq1  GTGCTTACCCACAGTGACAGAAAGC-TCTGATGGTGAAGAACCAGCCTGC  949
      ||||||||||||||||||||||||| ||||||||||||| ||||||||||
seq2  GTGCTTACCCACAGTGACAGAAAGCTTCTGATGGTGAAG-ACCAGCCTGC  949

seq1  TTTCATCTTAGACTTAAAGCCATCTTACCGGAAAGACAAACTAGGTTTGT  999
      ||||||||||||||  ||| ||||||||||||||||||||||| ||||||
seq2  TTTCATCTTAGACT--AAG-CATCTTACCGGAAAGACAAACTAAGTTTGT  996

seq1  TCCTAATTATGATTAAATCTGTTTCCAAGGACTGCTATGCCCTACCTATA  1049
      |||| |||||||||||   |||||||||||||||||||| ||||||||| 
seq2  TCCT-ATTATGATTAATCTTGTTTCCAAGGACTGCTATG-CCTACCTAT-  1043

seq1  ATCTTACTTACAAATGGTCCTGTACT-GAGTGTTCCAGGAAT-GACAATC  1097
      ||||||||||| | |||| |||| || ||||| |||||| || ||| |||
seq2  ATCTTACTTAC-ATTGGTTCTGTTCTGGAGTG-TCCAGGGATGGACCATC  1091

seq1  AGA--CCTTTGTTTAAAAAGCTGTTTATAG--TCA-TCTTGTAA  1136
      |||  ||||||||  |||||||||||||||  ||| ||||||||
seq2  AGAACCCTTTGTT--AAAAGCTGTTTATAGGCTCATTCTTGTAA  1133