BAC Information

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BAC

Clone NameB6Ng01-286P11
Chromosome4 (Build37)
Map Location 29,741,827 - 29,852,884
singlet/doubletdoublet
Overlap genenone
Upstream geneEpha7, LOC100040907, LOC100040811
Downstream geneLOC665185, LOC619906, LOC100040864
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286P11.bB6Ng01-286P11.g
ACCGA085021GA085022
length1,1831,083
definitionB6Ng01-286P11.b B6Ng01-286P11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,741,827 - 29,742,475)(29,851,801 - 29,852,884)
sequence
gaattccaagcttactgttggattcaaggattttctaggaaccattggaa
cactggtagaggcttagctatatgtcaaaaatcaatcattaaaggcactt
ataataaaacaatactgaaagagagcacacggatccaaacaccagactag
tgcggggacaggttttgagtatatgggctatgagaatgccaaggttccaa
gatgctgtttccatgaaactctttgcctcatgactgctttcaggctttag
gcctaccaagtagactgcactggagtggttgtagcagagaagggccttct
agaggtagattgactccagcagttgagtcaataaggtaggttgaaattga
acaactgtgtatgtgtgtgtgtctgtgtttttcatccacagatccaatat
tctctgggcggggcttgttagcatgaccattcctgaagcagatgtggggt
agcataagctatgtttaacaatcagtgatatcaaatagcttgttctatta
ggtatgtactaatgtcttatttccgacttatacatttctgtacagatttt
ttttgtttttattatctaggtttaggtttaatttcctgtacttttgtact
atcatgaatagtgaaaatagattttaaattttagaatatctttttcattt
tctaaatgtgtatattttaactgtaaatttttagcactgttgatgagtct
cataatttttacatgctatgttttcgtcattatgtatttacaattcttct
atttttatttacttttctgaaaattgtgtctattttatgcatatttataa
attttccaaatttactactgttatttctttcttattctcttttagctaaa
ggagatattttgtatgatacttatcattttaattaattaaaacttaattc
ttgataaaatacctgggctcctagagaacagacattatatgaactttaac
aacaatagatgctatctgagcatgagtttgtaagcatttgattagctatt
tcatttattgtattacgtcctgtatttctacagttttatagacattttag
tttacttagagttggaatattaacatttatagaatgtttacccctaagaa
aattttttcagttatatgtattggttttcggggtttaagtggaaggaact
taagtgatatggtaacattcttatccatatttc

gaattccatgttcaatacccagtattagacaaagaaaagattgagatgag
tacacagggagtcataatgaggcagacagacacagctgaagagttttgag
catgcagtttaaaacattcccatcataagcaaatggttagcaaacacata
gacaaaataaatctacaagctagaatctactgttgtgccatatgtttatt
tgttcctgggctttgtgtgatgggcagttcttgattgtgaagggtattct
tatccattctctcttctgtaagctctccctctaacctaccttggtcactt
tcacttgattggcgttcactgggacatttctttcaccacattcatctctt
tatgggtcttatgtacaagtgctttataatggagacttattatcattgaa
tccaataaatcaatttcgtttagaagctttctatcattacattaactctg
ctttaaacttctacatacatgcacaaaatgggttctattttcagttctta
tacaaaagaaatatggtgtcacatcaaaatccccctcaagcacacatttt
tctgctggtcctcactaatggcatgattgttatcagtcattagaaccaac
aatctccacttccatcctggcttattcccttctggtgtccatttgtcatt
caatttgttttgtgtctgatcccataatttcttgtctttagtccgtttcc
tctttccattcaactttctttattatttctgttctgtttcttgaatattc
cccttcaatttgattaccacctactttttatttttcatatattagttgtt
atctgttctacatttctatcttaaagtcgtttgttcaaaaaatcacaaat
acagacttccttgtctatcaattttcagttttagatgatgctctattttc
tttttttttcattttaaaattttaattaaacattttttataaaatatatt
ctaataactatttccacttccaagtattagatcttactaccccatccaac
tcatgcccctttctttcactcctcctctttaaacagcaaataataggcaa
aaaaagaatgattcataacttttaaataagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_29741827_29742475
seq2: B6Ng01-286P11.b_576_1228

seq1  TACATTTCTGTACAGATTTTTTTTGTTTTTATTATCTAGGTTTAGGTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTCTGTACAGATTTTTTTTGTTTTTATTATCTAGGTTTAGGTTTA  50

seq1  ATTTCCTGTACTTTTGTACTATCATGAATAGTGAAAATAGATTTTAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTGTACTTTTGTACTATCATGAATAGTGAAAATAGATTTTAAATT  100

seq1  TTAGAATATCTTTTTCATTTTCTAAATGTGTATATTTTAACTGTAAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATATCTTTTTCATTTTCTAAATGTGTATATTTTAACTGTAAATTT  150

seq1  TTAGCACTGTTGATGAGTCTCATAATTTTTACATGCTATGTTTTCGTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCACTGTTGATGAGTCTCATAATTTTTACATGCTATGTTTTCGTCAT  200

seq1  TATGTATTTACAATTCTTCTATTTTTATTTACTTTTCTGAAAATTGTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATTTACAATTCTTCTATTTTTATTTACTTTTCTGAAAATTGTGTC  250

seq1  TATTTTATGCATATTTATAAATTTTCCAAATTTACTACTGTTATTTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATGCATATTTATAAATTTTCCAAATTTACTACTGTTATTTCTTT  300

seq1  CTTATTCTCTTTTAGCTAAAGGAGATATTTTGTATGATACTTATCATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCTCTTTTAGCTAAAGGAGATATTTTGTATGATACTTATCATTTT  350

seq1  AATTAATTAAAACTTAATTCTTGATAAAATACCTGGGCTCCTAGAGAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATTAAAACTTAATTCTTGATAAAATACCTGGGCTCCTAGAGAACA  400

seq1  GACATTATATGAACTTT-ACAACAATAGATGCTATCTGAGCATGAGTTTG  449
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GACATTATATGAACTTTAACAACAATAGATGCTATCTGAGCATGAGTTTG  450

seq1  TAAGCATTTGATTAGCTATTTCATTTATTGTATTACGTCCTGTATTTCTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATTTGATTAGCTATTTCATTTATTGTATTACGTCCTGTATTTCTA  500

seq1  CAGTTTTATAGACATTTTAG-TTACTTAGAGTTGG-ATATTAACATTTAT  547
      |||||||||||||||||||| |||||||||||||| ||||||||||||||
seq2  CAGTTTTATAGACATTTTAGTTTACTTAGAGTTGGAATATTAACATTTAT  550

seq1  AGGATGTT--ACCCTA--GATATTTTTTCAGTTATATGTATTTGTTTTCT  593
      || |||||   |||||   | ||||||||||||||||||||| |||||| 
seq2  AGAATGTTTACCCCTAAGAAAATTTTTTCAGTTATATGTATTGGTTTTCG  600

seq1  GTGTTTTAGTGGAATG-ACTTAAGTGAATAATTGTTAACAATTCTTATTC  642
      | |||| ||||||| | ||||||||| |||  || |||| |||||||| |
seq2  GGGTTTAAGTGGAAGGAACTTAAGTG-ATA--TGGTAAC-ATTCTTATCC  646

seq1  ATATTTC  649
      |||||||
seq2  ATATTTC  653


seq1: chr4_29851801_29852884
seq2: B6Ng01-286P11.g_71_1153 (reverse)

seq1  TTTCTTATTTAAAA-TTATGATCCAT--CTTTTTTGCCTATTTATTTGCT  47
      |||||||||||||| ||||||  |||   ||||||||||| |||||||||
seq2  TTTCTTATTTAAAAGTTATGAATCATTCTTTTTTTGCCTA-TTATTTGCT  49

seq1  GTTTAAAGAG--AGAGTG-AAGGAAGGGGCATGGAGTTGGATGGGGGTAG  94
      ||||||||||   ||||| ||| ||||||||| ||||||||| |||||||
seq2  GTTTAAAGAGGAGGAGTGAAAGAAAGGGGCAT-GAGTTGGAT-GGGGTAG  97

seq1  TAAGGATCTAATACTTGGGAAAGTGGAAATAGTTATTAGAATATATTTTA  144
      ||| ||||||||||||||  ||||||||||||||||||||||||||||||
seq2  TAA-GATCTAATACTTGG--AAGTGGAAATAGTTATTAGAATATATTTTA  144

seq1  TAAAAATGTTTTAATTAAAATTTTAAAATGAAAAAAAAAGAAAAATAGAG  194
      ||||||   ||||||||||||||||||||||||||||||| |||||||||
seq2  TAAAAAATGTTTAATTAAAATTTTAAAATGAAAAAAAAAG-AAAATAGAG  193

seq1  CATCATCTAAAACTGAAAATTGATAGACAAGGAAGTCTGTATTTGTGATT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCTAAAACTGAAAATTGATAGACAAGGAAGTCTGTATTTGTGATT  243

seq1  TTTTGAACAAACGACTTTAAGATAGAAATGTAGAACAGATAACAACTAAT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAACAAACGACTTTAAGATAGAAATGTAGAACAGATAACAACTAAT  293

seq1  ATATGAAAAATAAAAAGTAGGTGGTAATCAAATTGAAGGGGAATATTCAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAAAATAAAAAGTAGGTGGTAATCAAATTGAAGGGGAATATTCAA  343

seq1  GAAACAGAACAGAAATAATAAAGAAAGTTGAATGGAAAGAGGAAACGGAC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGAACAGAAATAATAAAGAAAGTTGAATGGAAAGAGGAAACGGAC  393

seq1  TAAAGACAAGAAATTATGGGATCAGACACAAAACAAATTGAATGACAAAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACAAGAAATTATGGGATCAGACACAAAACAAATTGAATGACAAAT  443

seq1  GGACACCAGAAGGGAATAAGCCAGGATGGAAGTGGAGATTGTTGGTTCTA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACCAGAAGGGAATAAGCCAGGATGGAAGTGGAGATTGTTGGTTCTA  493

seq1  ATGACTGATAACAATCATGCCATTAGTGAGGACCAGCAGAAAAATGTGTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGATAACAATCATGCCATTAGTGAGGACCAGCAGAAAAATGTGTG  543

seq1  CTTGAGGGGGATTTTGATGTGACACCATATTTCTTTTGTATAAGAACTGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGGGGGATTTTGATGTGACACCATATTTCTTTTGTATAAGAACTGA  593

seq1  AAATAGAACCCATTTTGTGCATGTATGTAGAAGTTTAAAGCAGAGTTAAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAACCCATTTTGTGCATGTATGTAGAAGTTTAAAGCAGAGTTAAT  643

seq1  GTAATGATAGAAAGCTTCTAAACGAAATTGATTTATTGGATTCAATGATA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGATAGAAAGCTTCTAAACGAAATTGATTTATTGGATTCAATGATA  693

seq1  ATAAGTCTCCATTATAAAGCACTTGTACATAAGACCCATAAAGAGATGAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTCTCCATTATAAAGCACTTGTACATAAGACCCATAAAGAGATGAA  743

seq1  TGTGGTGAAAGAAATGTCCCAGTGAACGCCAATCAAGTGAAAGTGACCAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGAAAGAAATGTCCCAGTGAACGCCAATCAAGTGAAAGTGACCAA  793

seq1  GGTAGGTTAGAGGGAGAGCTTACAGAAGAGAGAATGGATAAGAATACCCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGTTAGAGGGAGAGCTTACAGAAGAGAGAATGGATAAGAATACCCT  843

seq1  TCACAATCAAGAACTGCCCATCACACAAAGCCCAGGAACAAATAAACATA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATCAAGAACTGCCCATCACACAAAGCCCAGGAACAAATAAACATA  893

seq1  TGGCACAACAGTAGATTCTAGCTTGTAGATTTATTTTGTCTATGTGTTTG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACAACAGTAGATTCTAGCTTGTAGATTTATTTTGTCTATGTGTTTG  943

seq1  CTAACCATTTGCTTATGATGGGAATGTTTTAAACTGCATGCTCAAAACTC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCATTTGCTTATGATGGGAATGTTTTAAACTGCATGCTCAAAACTC  993

seq1  TTCAGCTGTGTCTGTCTGCCTCATTATGACTCCCTGTGTACTCATCTCAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTGTGTCTGTCTGCCTCATTATGACTCCCTGTGTACTCATCTCAA  1043

seq1  TCTTTTCTTTGTCTAATACTGGGTATTGAACATGGAATTC  1084
      ||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTTTGTCTAATACTGGGTATTGAACATGGAATTC  1083


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