BAC Information

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BAC

Clone NameB6Ng01-288I14
Chromosome4 (Build37)
Map Location 132,970,056 - 133,085,517
singlet/doubletdoublet
Overlap geneSlc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik
Upstream genePhactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1
Downstream geneNudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288I14.bB6Ng01-288I14.g
ACCGA086173GA086174
length716329
definitionB6Ng01-288I14.b B6Ng01-288I14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,084,805 - 133,085,517)(132,970,056 - 132,970,382)
sequence
gaattccaggacagccaaggatacacagagaaaccctgtctcgaaagcca
aaaaaaaaaaaaaaaaaaaaaagactgggtgtatatgtataggcaggtgc
atgcctgtttgactaggtcagatcagtggtacaaattcttatatgtggct
agtgtgtgtttttctttccttttttttttttctgttgtgtagccctggct
atcttggaattcactctgtagaccagggtggcctcaaactcagaaatctg
cctgcctctgcctcccaagtgctgggattaaaggcatgtgccaccactgc
ccagcagtgtgtatttttcttaaagacaaggtctctaccccatcctgtcc
tggaactcttgagagacctttttcccagcctctggaattctgaggaaccc
ttgtgactagccaaatccttgtgctttgggcccttattaaggccataccc
gggagctgctctgccagttagtcatagggtagaggcgtttacagacccga
ttgtttaagagaagtgccagctggctaaggggaagccccacaaagcccaa
tccttctcctgtagctagaacttccctactcaggcccacctaccgtcctg
gctgaggccagagcccagcatggtctcatggccactgtcgggggcagcag
cagggggcagtagagcgggctgagcgcccctctgaggtctgtgggcgggg
agcgggcttttgcggg
actctgtagaccaggctgccctcacagagatctgcttgcctctgcctcct
gagtgctgggattaaaggcatgcaccaccactgcccggcctttccttctt
tctttctgtttttatttttgtttgtttggttttctgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtagccctgactctcctggaactag
ctctgtaggccaagccagcttcaaactcagagatttgcctacctcttgct
aggattataggtgttgtgctacgattgcctggctaattgggccttttcta
gagctttagttcaggtgtgaatgccccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_133084805_133085517
seq2: B6Ng01-288I14.b_47_762 (reverse)

seq1  CCCGCAAAAG-CCGCT-CCCGCCCACAGACCTCCGAGGGGCGCTCAGCCC  48
      |||||||||| ||||| |||||||||||||||| ||||||||||||||||
seq2  CCCGCAAAAGCCCGCTCCCCGCCCACAGACCTCAGAGGGGCGCTCAGCCC  50

seq1  GCTCTACTG-CCCCTGCTGCTGCCCCCGACAGTGGCCATGAGACCATGCT  97
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTACTGCCCCCTGCTGCTGCCCCCGACAGTGGCCATGAGACCATGCT  100

seq1  GGGCTCTGGCCTCAGCCAGGACGGTAGGTGGGCCTGAGTAGGGAAGTTCT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCTGGCCTCAGCCAGGACGGTAGGTGGGCCTGAGTAGGGAAGTTCT  150

seq1  AGCTACAGGAGAAGGATTGGGCTTTGTGGGGCTTCCCCTTAGCCAGCTGG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACAGGAGAAGGATTGGGCTTTGTGGGGCTTCCCCTTAGCCAGCTGG  200

seq1  CACTTCTCTTAAACAATCGGGTCTGTAAACGCCTCTACCCTATGACTAAC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTCTTAAACAATCGGGTCTGTAAACGCCTCTACCCTATGACTAAC  250

seq1  TGGCAGAGCAGCTCCCGGGTCTGGCCTTAATAAGGGCCCAAAGCACAAGG  297
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGGCAGAGCAGCTCCCGGGTATGGCCTTAATAAGGGCCCAAAGCACAAGG  300

seq1  ATTTGGCTAGTCACAAGGGTTCCTCAGAATTCCAGAGGCTGGGAAAAAGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGCTAGTCACAAGGGTTCCTCAGAATTCCAGAGGCTGGGAAAAAGG  350

seq1  TCTCTCAAGAGTTCCAGGACAGGATGGGGTAGAGACCTTGTCTTTAAGAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCAAGAGTTCCAGGACAGGATGGGGTAGAGACCTTGTCTTTAAGAA  400

seq1  AAATACACACTGCTGGGCAGTGGTGGCACATGCCTTTAATCCCAGCACTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACACACTGCTGGGCAGTGGTGGCACATGCCTTTAATCCCAGCACTT  450

seq1  GGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGGCCACCCTGGTCTACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGAGGCCACCCTGGTCTACA  500

seq1  GAGTGAATTCCAAGATAGCCAGGGCTACACAACAGAAAAAAAAAAAAGGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAATTCCAAGATAGCCAGGGCTACACAACAGAAAAAAAAAAAAGGA  550

seq1  AAGAAAAACACACACTAGCCACATATAAGAATTTGTACCACTGATCTGAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAACACACACTAGCCACATATAAGAATTTGTACCACTGATCTGAC  600

seq1  CTAGTCAAACAGGCATGCACCTGCCTATACATATACACCCAGTCTTTTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCAAACAGGCATGCACCTGCCTATACATATACACCCAGTCTTTTTT  650

seq1  TTTTTTTTTTTTTTTTTGGCTTTCGAGACAGGGTTTCTCTGTGTATCCTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTGGCTTTCGAGACAGGGTTTCTCTGTGTATCCTT  700

seq1  GGCTGTCCTGGAATTC  713
      ||||||||||||||||
seq2  GGCTGTCCTGGAATTC  716

seq1: chr4_132970056_132970382
seq2: B6Ng01-288I14.g_74_402

seq1  ACTCTGTAGACCAGGCTGCCCTCACAGAGATCTGCTTGCCTCTGCCTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTAGACCAGGCTGCCCTCACAGAGATCTGCTTGCCTCTGCCTCCT  50

seq1  GAGTGCTGGGATTAAAGGCATGCACCACCACTGCCCGGCCTTTCCTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTGGGATTAAAGGCATGCACCACCACTGCCCGGCCTTTCCTTCTT  100

seq1  TCTTTCTGTTTTTATTTTTGTTTGTTTGGTTTTCTGTGTGTGTGTGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGTTTTTATTTTTGTTTGTTTGGTTTTCTGTGTGTGTGTGTGTG  150

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTAGCCCTGACTCTCCTGGAACTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTAGCCCTGACTCTCCTGGAACTAG  200

seq1  CTCTGTAGGCCAAGCCAGCTTCAAACTCAGAGATTTGCCTACCTCTTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAGGCCAAGCCAGCTTCAAACTCAGAGATTTGCCTACCTCTTGCT  250

seq1  AGGATTAAAGGTG-TGTGCTACGATTGCCTGGCAAATTGGGCCTTTTCTA  299
      ||||||| ||||| ||||||||||||||||||| ||||||||||||||||
seq2  AGGATTATAGGTGTTGTGCTACGATTGCCTGGCTAATTGGGCCTTTTCTA  300

seq1  GAGC-TTAGTTCAGGTGTGAATGCCCCAG  327
      |||| ||||||||||||||||||||||||
seq2  GAGCTTTAGTTCAGGTGTGAATGCCCCAG  329