BAC Information

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BAC

Clone NameB6Ng01-288K01
Chromosome4 (Build37)
Map Location 145,414,525 - 145,415,662
singlet/doubletsinglet
Overlap gene1700029I01Rik
Upstream geneLOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704
Downstream geneLOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288K01.bB6Ng01-288K01.g
ACCGA086243GA086244
length1,1231,180
definitionB6Ng01-288K01.b B6Ng01-288K01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgattggatgaggtggggtggagctagatgagatccaaagatgc
aaggataggagttttgttttttagcccgtgccctaagtagaagctagttg
tagtaagagaagctgttgtaaggggagttttataagaaaagctgcaagaa
ggagaacaagtaaagaagctgttgtgtgaacccaacttggtatccgtgtc
catgtcgttcgtgtctccgtgggcgcaaaggacagcagcacttttctact
ttataaaaagaagtaattaagataccttttttgatgcagatgaggttgaa
ggataattgttttctaaaagtgttatggagatgtgtctgaagatacgaat
tgctgctcttacactgaccaaaaagaatgtagatcatagaaaataagccc
tttagataacattctacatatagagattaaaacttttggatgacttgaat
aaaaagagatttttaaaaaaagaaatgtggaaaggacactgacctgtggt
gtatttaccagacacacactcattcttgttgttgtccttctcccagggtc
tctgtgaagaacaaagattgaattcttcatgaaatttcacatcaaggtct
gaataattcaaagatgaaataaatacaacaccattacagaaaatgctaaa
ccacattatatacataaaaaaaaaattaaagcaaaatgataccaggaatc
ttgacaatgtgcactcatgaaagtaagtaatgatatatttagactgtaac
tgtaacctagttcctgcccaccacccttgattctcaaagttaattcacaa
cacctgatatggaaatccctgccacctgacctaaatgacacacagcaaaa
gaaaattaagacgctggagctaaagcaatttgacaatgttaataaaatta
ccataccacaaatcactaactcataccaattctcatgacaaataatcatg
aacaaacacaagagcaaaagtcaaaatataatctgaacaccattcatgtt
gacaattgacataaagaggggaacagcaccagaatccaagaagcagaaca
aactgatgaaattcccgaagaactctacagttgtaagaagaatatataca
tatgcaggtcttaggctcagtcc
gaattcatactggagagaaaccttacaaatgcagtgaatgtgacaaatgc
tttacccaacaatcccatcttagtattcatcagagaattcatacaggaga
gaaaccttacaaatgtagtgaatgcgacaaatgctttactgacaaattca
ttctgggaaagcatcagagaattcatacaggaaagaaaccttacaaatgc
agtgagtgtgacaaatgctttactgacaaattcactctgagaaagcatca
gagaattcatacaggagagaaaccttacaaatgtaatgaatgtgacaaat
gctttactgacaaaggctatctgagagttcatcagagaattcatactgga
gagaaaccttacaaatgcagtgagtgtgacaaatgctttacccaaccatc
ccatcttagtattcattgtagaattcattcaggagagaaaccttacaaat
gcagtgagtgtgacaaatgctttaaccaaccatcccatcttagtattcat
cgtagaattcattcaggagagaaaccttacaaatgtagtgaatgcgacaa
atgctttactgacaaattcactctgagaaagcatcagataattcatacag
gagagaaaccttacaaatgcagtgagtgtgacaaatgctttactgacaaa
ggctatctgagagttcatcatagaattcatgcaggagagaaaccttacaa
atgtagtgaatgcgacaaatgctttactgacaaaggctatctgagagttc
atcatagaattcatgcaagagagaaaccttacaaatgtagtgaatgtgac
aaatgctttactgacaggctatctgagagttcattatagaattcatgcag
gagagaaaccttataaatgcagtgaatgtgacaaatgctttacccgaaaa
tcacatcttagtattcatcagagaagtcatacaggagagaaaccgtacaa
atgcagtgaatgtgacaaatgctttaccaacaatgccatcttagtattca
tcagagattcataacaggagagaaacctttacaaatgcagtgaatgttga
caaatgctttaccaaccatgcatcttagttatcatccagaattcatttca
gggaagagaaaccttatatgttattggaatgtgaacaaaatgccttacct
ggaaaattcccaactccttagatagatact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145414525_145415662
seq2: B6Ng01-288K01.b_48_1170 (reverse)

seq1  GGACTGAAGCCCTAAGGCCCTGCATATGTATAATTATTC-TCTTACCCAC  49
      |||||||   ||||| | ||||||||||||||  ||||| |||||  || 
seq2  GGACTGA--GCCTAA-GACCTGCATATGTATA--TATTCTTCTTA--CAA  43

seq1  TTGTAGGAGTTC-TCTGGAATTTCATTAAGTTTGTTTCTGCCTTCTTTGA  98
       |||| |||||| || ||||||||| | |||||| ||||| |||||| ||
seq2  CTGTA-GAGTTCTTCGGGAATTTCA-TCAGTTTG-TTCTG-CTTCTTGGA  89

seq1  ATTTCT-GTGCTTGTTCCCTCTTTATGTCATTTGTCCACATTGAATGGTG  147
        |||| |||||  | |||||||||||||| ||||| ||| |||||||||
seq2  --TTCTGGTGCTGTTCCCCTCTTTATGTCAATTGTCAACA-TGAATGGTG  136

seq1  TTCAGATTATATTTTGACTTTTGCCTCTTGTGTTTGTTTCATAATTTATT  197
      ||||||||||||||||||||||| |||||||||||| ||||| | |||||
seq2  TTCAGATTATATTTTGACTTTTG-CTCTTGTGTTTG-TTCATGA-TTATT  183

seq1  TGTCATGAGAATTGGTATTGAGTTAGTGATTTGTGGTATGGTAATTTTAT  247
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGTCATGAGAATTGGTA-TGAGTTAGTGATTTGTGGTATGGTAATTTTAT  232

seq1  TAACATTGTCAAATTGCTTTAGCTCCAGCGTCTTAATTTTCTTTTGCTGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTGTCAAATTGCTTTAGCTCCAGCGTCTTAATTTTCTTTTGCTGT  282

seq1  GTGTCATTTAGGTCAGGTGGCAGGGATTTCCATATCAGGTGTTGTGAATT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCATTTAGGTCAGGTGGCAGGGATTTCCATATCAGGTGTTGTGAATT  332

seq1  AACTTTGAGAATCAAGGGTGGTGGGCAGGAACTAGGTTACAGTTACAGTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGAGAATCAAGGGTGGTGGGCAGGAACTAGGTTACAGTTACAGTC  382

seq1  TAAATATATCATTACTTACTTTCATGAGTGCACATTGTCAAGATTCCTGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATATCATTACTTACTTTCATGAGTGCACATTGTCAAGATTCCTGG  432

seq1  TATCATTTTGCTTTAATTTTTTTTTTAAGTATATAATGTGGTTTAGCATT  497
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TATCATTTTGCTTTAATTTTTTTTTTATGTATATAATGTGGTTTAGCATT  482

seq1  TTCTGTAATGGTGTTGTATTTATTTCATCTTTGAATTATTCAGACCTTGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAATGGTGTTGTATTTATTTCATCTTTGAATTATTCAGACCTTGA  532

seq1  TCTGAAATTTCAAGAAGAATTCAATCTTTGTTCTTCACAGAGACCCTGGG  597
      | |||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGTGAAATTTCATGAAGAATTCAATCTTTGTTCTTCACAGAGACCCTGGG  582

seq1  AGAAGGACAGCAACAAGAATGAGTGTGTGTCTGGTAAATACACCACAGGT  647
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGACAACAACAAGAATGAGTGTGTGTCTGGTAAATACACCACAGGT  632

seq1  CAGTGTCCTTTCCACATTTCTTTTTTTAAAAATCTCTTTTTATTCAAGTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCCTTTCCACATTTCTTTTTTTAAAAATCTCTTTTTATTCAAGTC  682

seq1  ATCCAAAAGTTTTAATCTCTATATGTAGAATGTTATCTAAAGGGCTTATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAAAGTTTTAATCTCTATATGTAGAATGTTATCTAAAGGGCTTATT  732

seq1  TTCTATGATCTACATTCTTTTTGGTCAGTGTAAGAGCAGCAATTTGTATT  797
      |||||||||||||||||||||||||||||||||||||||||||| |||| 
seq2  TTCTATGATCTACATTCTTTTTGGTCAGTGTAAGAGCAGCAATTCGTATC  782

seq1  TTCAGACACATCTCCATAACACTTTTAGAAAACAATTATCCTTCAACCTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACACATCTCCATAACACTTTTAGAAAACAATTATCCTTCAACCTC  832

seq1  ATCTGCATCAAAAAAGGTATCTTAATTACTTCTTTTTATAAAGTAGAAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCATCAAAAAAGGTATCTTAATTACTTCTTTTTATAAAGTAGAAAA  882

seq1  GTGCTGCTGTCCTCTGCGCCCACGGAGACAGGAACGACATGGACACGGAT  947
      ||||||||||||| |||||||||||||||| |||||||||||||||||||
seq2  GTGCTGCTGTCCTTTGCGCCCACGGAGACACGAACGACATGGACACGGAT  932

seq1  ACCAAGTTGGGTTCACACAACAGCTTCTTTACTTGTTCTCCTTCTTGCAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTTGGGTTCACACAACAGCTTCTTTACTTGTTCTCCTTCTTGCAG  982

seq1  CTTTTCTTATAAAACTCCCCTTACAACAGCTTCTCTTACTACAACTAGCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTATAAAACTCCCCTTACAACAGCTTCTCTTACTACAACTAGCT  1032

seq1  TCTACTTAGGGCAAGGGCTAAAAAACAAAACTCCTATCCTTGCATCTTTG  1097
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCTACTTAGGGCACGGGCTAAAAAACAAAACTCCTATCCTTGCATCTTTG  1082

seq1  GATCTCATCTAGCTCCACCCCACCTCATCCAATCAGAATTC  1138
      |||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCATCTAGCTCCACCCCACCTCATCCAATCAGAATTC  1123